PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2gefA_

Fold library id	PDB Header	Molecule	Title
c2gefA_	PDB header: hydrolase	Chain: A: PDB Molecule: protease vp4;	PDBTitle: crystal structure of a novel viral protease with a2 serine/lysine catalytic dyad mechanism

Links to external resources
Added to library: Tue Mar 16 12:26:08 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D L P I S L L Q T L A Y K Q P L G R N S R I V H F T D G A L F P V V A F G D N H S T S E L Y I A V R G D H R D L X S P D V R D S Y A L T G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S
G G G S
T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D H K V W G A T H K F N V K T R T D L T I L P V A D V F W R A D G S A D V D V V W N D X P A V A G Q S S S I A L A L A S S L P F V P K A A Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
S
S S
T T S
S S T T
S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . .

Sequence T G C L S G T N V Q P V Q F G N L K A R A A H K I G L P L V G X T Q D G G E D T R I C T L D D A A D H A F D S X E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B S
T T T
B T T
S S
B T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	L	P	I	S	L	L	Q	T	L	A	Y	K	Q	P	L	G	R	N	S	R	I	V	H	F	T	D	G	A	L	F	P	V	V	A	F	G	D	N	H	S	T	S	E	L	Y	I	A	V	R	G	D	H	R	D	L	X	S	P	D	V	R	D	S	Y	A	L	T	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										S	S											S	S												S			G	G	G	S						T						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	H	K	V	W	G	A	T	H	K	F	N	V	K	T	R	T	D	L	T	I	L	P	V	A	D	V	F	W	R	A	D	G	S	A	D	V	D	V	V	W	N	D	X	P	A	V	A	G	Q	S	S	S	I	A	L	A	L	A	S	S	L	P	F	V	P	K	A	A	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S					T						S				S	S														T	T	S																S	S	T	T											S	S			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Sequence	T	G	C	L	S	G	T	N	V	Q	P	V	Q	F	G	N	L	K	A	R	A	A	H	K	I	G	L	P	L	V	G	X	T	Q	D	G	G	E	D	T	R	I	C	T	L	D	D	A	A	D	H	A	F	D	S	X	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T					B	S											T	T	T							B	T	T			S	S					B											T	T