PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1p3da3

Fold library id	Fold	Superfamily	Family
d1p3da3	Ribokinase-like	MurD-like peptide ligases, catalytic domain	MurCDEF

Links to external resources
Added to library: Tue Mar 16 13:20:18 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R A Q X L A E I X R F R H G I A V A G T H G K T T T T A X I S X I Y T Q A K L D P T F V N G G L V K S A G K N A H L G A S R Y L I A E A D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S S S S
T T
T T T T
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S D A S F L H L Q P X V S V V T N X E P D H X D T Y E G D F E K X K A T Y V K F L H N L P F Y G L A V X C A D D P V L X E L V P K V G R Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S G G G G
S
S G G G G T T
T T S
T T
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I T Y G F S E Q A D Y R I E D Y E Q T G F Q G H Y T V I C P N N E R I N V L L N V P G K H N A L N A T A A L A V A K E E G I A N E A I L E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T
S T T
T T
S S
S T T

. . . . .

Sequence L A D F Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	A	Q	X	L	A	E	I	X	R	F	R	H	G	I	A	V	A	G	T	H	G	K	T	T	T	T	A	X	I	S	X	I	Y	T	Q	A	K	L	D	P	T	F	V	N	G	G	L	V	K	S	A	G	K	N	A	H	L	G	A	S	R	Y	L	I	A	E	A	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	S							S	S	S																T	T												T	T	T	T							S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	D	A	S	F	L	H	L	Q	P	X	V	S	V	V	T	N	X	E	P	D	H	X	D	T	Y	E	G	D	F	E	K	X	K	A	T	Y	V	K	F	L	H	N	L	P	F	Y	G	L	A	V	X	C	A	D	D	P	V	L	X	E	L	V	P	K	V	G	R	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	G	G	G	G				S											S	G	G	G	G	T	T														T	T	S		T	T							T	T													S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	T	Y	G	F	S	E	Q	A	D	Y	R	I	E	D	Y	E	Q	T	G	F	Q	G	H	Y	T	V	I	C	P	N	N	E	R	I	N	V	L	L	N	V	P	G	K	H	N	A	L	N	A	T	A	A	L	A	V	A	K	E	E	G	I	A	N	E	A	I	L	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	T	T		S										T	T									T	T									S	S		S																	T	T
	.	.	.	.	.
Sequence	L	A	D	F	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T