Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	C	V	Q	C	E	Q	T	I	R	T	P	A	G	N	G	C	S	Y	A	Q	G	M	C	G	K	T	A	E	T	S	D	L	Q	D	L	L	I	A	A	L	Q	G	L	S	A	W	A	V	K	A	R	E	Y	G	I	I	N	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?							?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	V	D	S	F	A	P	R	A	F	F	S	T	L	T	N	V	N	F	D	S	P	R	I	V	G	Y	A	R	E	A	I	A	L	R	E	A	L	K	A	Q	C	L	A	V	D	A	N	A	R	V	D	N	P	M	A	D	L	Q	L
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	S	D	D	L	G	E	L	Q	R	Q	A	A	E	F	T	P	N	K	D	K	A	A	I	G	E	N	I	L	G	L	R	L	L	C	L	Y	G	L	K	G	A	A	A	Y	M	E	H	A	H	V	L	G	Q	Y	D	N	D	I	Y
Secondary structure
SS confidence
Disorder												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	Q	Y	H	K	I	M	A	W	L	G	T	W	P	A	D	M	N	A	L	L	E	C	S	M	E	I	G	Q	M	N	F	K	V	M	S	I	L	D	A	G	E	T	G	K	Y	G	H	P	T	P	T	Q	V	N	V	K	A	T	A
Secondary structure
SS confidence
Disorder																																														?		?			?	?		?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	K	C	I	L	I	S	G	H	D	L	K	D	L	Y	N	L	L	E	Q	T	E	G	T	G	V	N	V	Y	T	H	G	E	M	L	P	A	H	G	Y	P	E	L	R	K	F	K	H	L	V	G	N	Y	G	S	G	W	Q	N	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Q	V	E	F	A	R	F	P	G	P	I	V	M	T	S	N	C	I	I	D	P	T	V	G	A	Y	D	D	R	I	W	T	R	S	I	V	G	W	P	G	V	R	H	L	D	G	D	D	F	S	A	V	I	T	Q	A	Q	Q	M	A
Secondary structure
SS confidence
Disorder																							?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	F	P	Y	S	E	I	P	H	L	I	T	V	G	F	G	R	Q	T	L	L	G	A	A	D	T	L	I	D	L	V	S	R	E	K	L	R	H	I	F	L	L	G	G	C	D	G	A	R	G	E	R	H	Y	F	T	D	F	A	T
Secondary structure
SS confidence
Disorder			?	?	?																																														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		S	V	P	D	D	C	L	I	L	T	L	A	C	G	K	Y	R	F	N	K	L	E	F	G	D	I	E	G	L	P	R	L	V	D	A	G	Q	C	N	D	A	Y	S	A	I	I	L	A	V	T	L	A	E	K	L	G	C	G	V	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		D	L	P	L	S	L	V	L	S	W	F	E	Q	K	A	I	V	I	L	L	T	L	L	S	L	G	V	K	N	I	V	T	G	P	T	A	P	G	F	L	T	P	D	L	L	A	V	L	N	E	K	F	G	L	R	S	I	T	T	V
Secondary structure
SS confidence
Disorder																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550
Sequence		E	E	D	M	K	Q	L	L	S	A
Secondary structure
SS confidence
Disorder										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gnt chain A Region: 1 - 550 Aligned: 544 Modelled: 547 Confidence: 100.0% Identity: 41% Fold: Prismane protein-like Superfamily: Prismane protein-like Family: Hybrid cluster protein (prismane protein) Phyre2 PDB 1gnl chain A Region: 1 - 548 Aligned: 533 Modelled: 545 Confidence: 100.0% Identity: 42% Fold: Prismane protein-like Superfamily: Prismane protein-like Family: Hybrid cluster protein (prismane protein) Phyre2 PDB 1oao chain A Region: 3 - 547 Aligned: 494 Modelled: 505 Confidence: 100.0% Identity: 20% Fold: Prismane protein-like Superfamily: Prismane protein-like Family: Carbon monoxide dehydrogenase Phyre2 PDB 1su7 chain A Region: 3 - 547 Aligned: 493 Modelled: 521 Confidence: 100.0% Identity: 20% Fold: Prismane protein-like Superfamily: Prismane protein-like Family: Carbon monoxide dehydrogenase Phyre2 PDB 1jqk chain A Region: 3 - 547 Aligned: 495 Modelled: 507 Confidence: 100.0% Identity: 21% Fold: Prismane protein-like Superfamily: Prismane protein-like Family: Carbon monoxide dehydrogenase Phyre2 PDB 1jqk chain E Region: 3 - 547 Aligned: 494 Modelled: 504 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase; PDBTitle: crystal structure of carbon monoxide dehydrogenase from2 rhodospirillum rubrum Phyre2 PDB 3cf4 chain A Region: 2 - 519 Aligned: 430 Modelled: 445 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex Phyre2 PDB 1ru3 chain A Region: 351 - 516 Aligned: 158 Modelled: 164 Confidence: 97.6% Identity: 15% Fold: Prismane protein-like Superfamily: Prismane protein-like Family: Acetyl-CoA synthase Phyre2 PDB 1h3d chain A domain 2 Region: 218 - 275 Aligned: 54 Modelled: 58 Confidence: 56.9% Identity: 17% Fold: Ferredoxin-like Superfamily: GlnB-like Family: ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain Phyre2 PDB 3hrd chain F Region: 455 - 494 Aligned: 40 Modelled: 40 Confidence: 52.9% Identity: 10% PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase Phyre2 PDB 3h7u chain A Region: 380 - 547 Aligned: 140 Modelled: 145 Confidence: 51.3% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 Phyre2 PDB 2gp4 chain A domain 2 Region: 376 - 435 Aligned: 60 Modelled: 60 Confidence: 50.1% Identity: 18% Fold: IlvD/EDD N-terminal domain-like Superfamily: IlvD/EDD N-terminal domain-like Family: lvD/EDD N-terminal domain-like Phyre2 PDB 1n62 chain B domain 2 Region: 455 - 496 Aligned: 42 Modelled: 42 Confidence: 47.9% Identity: 14% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1rm6 chain A domain 2 Region: 455 - 494 Aligned: 40 Modelled: 40 Confidence: 43.8% Identity: 23% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1n62 chain E Region: 455 - 496 Aligned: 42 Modelled: 42 Confidence: 41.5% Identity: 14% PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state Phyre2 PDB 1ws6 chain A domain 1 Region: 391 - 438 Aligned: 47 Modelled: 48 Confidence: 41.1% Identity: 19% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: YhhF-like Phyre2 PDB 1pam chain A domain 4 Region: 494 - 537 Aligned: 44 Modelled: 44 Confidence: 39.8% Identity: 23% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Amylase, catalytic domain Phyre2 PDB 1oao chain C Region: 351 - 539 Aligned: 179 Modelled: 189 Confidence: 37.5% Identity: 11% Fold: Prismane protein-like Superfamily: Prismane protein-like Family: Acetyl-CoA synthase Phyre2 PDB 1nh8 chain A domain 2 Region: 218 - 269 Aligned: 52 Modelled: 52 Confidence: 36.9% Identity: 13% Fold: Ferredoxin-like Superfamily: GlnB-like Family: ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain Phyre2 PDB 3ijd chain B Region: 373 - 546 Aligned: 118 Modelled: 124 Confidence: 35.4% Identity: 14% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: uncharacterized protein cthe_2304 from clostridium2 thermocellum binds two copies of 5-methyl-5,6,7,8-3 tetrahydrofolic acid Phyre2 1 d1gnta_ 2 d1gnla_ 3 d1oaoa_ 4 d1su7a_ 5 d1jqka_ 6 c1jqkE_ 7 c3cf4A_ 8 d1ru3a_ 9 d1h3da2 10 c3hrdF_ 11 c3h7uA_ 12 d2gp4a2 13 d1n62b2 14 d1rm6a2 15 c1n62E_ 16 d1ws6a1 17 d1pama4 18 d1oaoc_ 19 d1nh8a2 20 c3ijdB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1gnta_ 100.0 41 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Hybrid cluster protein (prismane protein) 2 d1gnla_ 100.0 42 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Hybrid cluster protein (prismane protein) 3 d1oaoa_ 100.0 20 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 4 d1su7a_ 100.0 20 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 5 d1jqka_ 100.0 21 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 6 c1jqkE_ 100.0 21 PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase; PDBTitle: crystal structure of carbon monoxide dehydrogenase from2 rhodospirillum rubrum 7 c3cf4A_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 8 d1ru3a_ 97.6 15 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Acetyl-CoA synthase 9 d1h3da2 56.9 17 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 10 c3hrdF_ 52.9 10 PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase 11 c3h7uA_ 51.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 12 d2gp4a2 50.1 18 Fold:IlvD/EDD N-terminal domain-like Superfamily:IlvD/EDD N-terminal domain-like Family:lvD/EDD N-terminal domain-like 13 d1n62b2 47.9 14 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 14 d1rm6a2 43.8 23 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 15 c1n62E_ 41.5 14 PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state 16 d1ws6a1 41.1 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:YhhF-like 17 d1pama4 39.8 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 18 d1oaoc_ 37.5 11 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Acetyl-CoA synthase 19 d1nh8a2 36.9 13 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 20 c3ijdB_ 35.4 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: uncharacterized protein cthe_2304 from clostridium2 thermocellum binds two copies of 5-methyl-5,6,7,8-3 tetrahydrofolic acid 21 c3enoB_ not modelled 35.2 12 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 22 c3rxyA_ not modelled 34.1 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nif3 protein; PDBTitle: crystal structure of nif3 superfamily protein from sphaerobacter2 thermophilus 23 d2h5fa1 not modelled 32.9 41 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 24 c2dy0A_ not modelled 32.9 15 PDB header:transferase Chain: A: PDB Molecule:adenine phosphoribosyltransferase; PDBTitle: crystal structure of project jw0458 from escherichia coli 25 d2ex2a1 not modelled 31.8 19 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 26 d1dx5i2 not modelled 31.3 47 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module 27 d2c4ka2 not modelled 30.0 21 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 28 c3lpnB_ not modelled 29.1 24 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase2 from thermoplasma volcanium in complex with an atp analog (ampcpp). 29 c2ivoC_ not modelled 27.8 14 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 30 d1hw6a_ not modelled 27.6 14 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 31 c1sb3D_ not modelled 26.6 23 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 32 c2vd3B_ not modelled 24.8 20 PDB header:transferase Chain: B: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the structure of histidine inhibited hisg from2 methanobacterium thermoautotrophicum 33 d1mmca_ not modelled 24.6 32 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Plant lectins/antimicrobial peptides Family:Antimicrobial peptide 2, AC-AMP2 34 c3cixA_ not modelled 24.3 14 PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate 35 c3it4C_ not modelled 23.9 18 PDB header:transferase Chain: C: PDB Molecule:arginine biosynthesis bifunctional protein argj PDBTitle: the crystal structure of ornithine acetyltransferase from2 mycobacterium tuberculosis (rv1653) at 1.7 a 36 d1p94a_ not modelled 23.8 25 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 37 d1vlba4 not modelled 23.7 13 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 38 d1ffvb2 not modelled 23.6 13 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 39 d1s0ya_ not modelled 23.3 53 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 40 d2h7za1 not modelled 23.2 35 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 41 d1dkua2 not modelled 22.0 21 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 42 c3e5aB_ not modelled 21.5 86 PDB header:transferase Chain: B: PDB Molecule:targeting protein for xklp2; PDBTitle: crystal structure of aurora a in complex with vx-680 and tpx2 43 d1pyfa_ not modelled 20.5 18 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 44 c2wtoB_ not modelled 20.5 26 PDB header:metal binding protein Chain: B: PDB Molecule:orf131 protein; PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34 45 d1t3qb2 not modelled 20.3 8 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 46 c3ktbD_ not modelled 19.9 20 PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 47 d2h7zb1 not modelled 19.9 24 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 48 c1q1kA_ not modelled 19.7 17 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: structure of atp-phosphoribosyltransferase from e. coli complexed with2 pr-atp 49 d1cjba_ not modelled 19.3 27 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 50 d3bmva4 not modelled 19.0 26 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 51 d1cxla4 not modelled 18.4 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 52 d1pj3a2 not modelled 18.2 30 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 53 d1o98a1 not modelled 18.1 20 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 54 c1zwuA_ not modelled 17.3 32 PDB header:antimicrobial protein Chain: A: PDB Molecule:amaranthus caudatus antimicrobial peptide 2 (acmp2); PDBTitle: 30 nmr structures of acamp2-like peptide with non natural beta-(2-2 naphthyl)-alanine residue. 55 c3dahB_ not modelled 16.7 17 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei 56 d1whqa_ not modelled 16.2 18 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 57 c1ldbA_ not modelled 16.0 15 PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-l-lactate dehydrogenase; PDBTitle: structure determination and refinement of bacillus2 stearothermophilus lactate dehydrogenase 58 c1dkrB_ not modelled 15.9 21 PDB header:transferase Chain: B: PDB Molecule:phosphoribosyl pyrophosphate synthetase; PDBTitle: crystal structures of bacillus subtilis phosphoribosylpyrophosphate2 synthetase: molecular basis of allosteric inhibition and activation. 59 d1z7ga1 not modelled 15.9 26 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 60 d2fpoa1 not modelled 15.3 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:YhhF-like 61 c3outC_ not modelled 14.9 18 PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. 62 d1dgja4 not modelled 14.9 16 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 63 c1hygA_ not modelled 14.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate/malate dehydrogenase; PDBTitle: crystal structure of mj0490 gene product, the family of2 lactate/malate dehydrogenase 64 c2v4iA_ not modelled 14.6 14 PDB header:transferase Chain: A: PDB Molecule:glutamate n-acetyltransferase 2 alpha chain; PDBTitle: structure of a novel n-acyl-enzyme intermediate of an n-2 terminal nucleophile (ntn) hydrolase, oat2 65 c2jq4A_ not modelled 14.6 21 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein atu2571; PDBTitle: complete resonance assignments and solution structure2 calculation of atc2521 (nesg id: att6) from agrobacterium3 tumefaciens 66 d2jq4a1 not modelled 14.6 21 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 67 d1u9ya2 not modelled 14.5 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 68 d2f2ab2 not modelled 14.4 16 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:GatB/GatE catalytic domain-like 69 c3dm5A_ not modelled 14.3 13 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 70 c1o98A_ not modelled 14.2 17 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 71 d1ugpa_ not modelled 14.1 23 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 72 d1o6za2 not modelled 13.8 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 73 c2eoyA_ not modelled 13.6 57 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 557-2 589) of human zinc finger protein 473 74 c3omtA_ not modelled 13.6 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. 75 d1utxa_ not modelled 13.2 28 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 76 c1u9yD_ not modelled 13.0 17 PDB header:transferase Chain: D: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of phosphoribosyl diphosphate synthase2 from methanocaldococcus jannaschii 77 c2j37W_ not modelled 12.9 10 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 78 c2l9fA_ not modelled 12.8 14 PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp 79 c3p9xB_ not modelled 12.6 15 PDB header:transferase Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans 80 c1ex1A_ not modelled 12.5 13 PDB header:hydrolase Chain: A: PDB Molecule:protein (beta-d-glucan exohydrolase isoenzyme exo1); PDBTitle: beta-d-glucan exohydrolase from barley 81 d1cyga4 not modelled 12.5 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 82 d1lgya_ not modelled 12.4 29 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 83 d2d6fc3 not modelled 12.3 30 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:GatB/GatE catalytic domain-like 84 d1lmb3_ not modelled 12.1 28 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 85 d2nlya1 not modelled 12.0 12 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase 86 c3jruB_ not modelled 12.0 15 PDB header:hydrolase Chain: B: PDB Molecule:probable cytosol aminopeptidase; PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331 87 c1qr6A_ not modelled 12.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:malic enzyme 2; PDBTitle: human mitochondrial nad(p)-dependent malic enzyme 88 c3bs3A_ not modelled 11.9 28 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 89 c3t76A_ not modelled 11.8 22 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii 90 c3igzB_ not modelled 11.7 10 PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration 91 d1fsga_ not modelled 11.5 23 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 92 c3fybA_ not modelled 11.3 60 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function (duf1244); PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis 93 d1jsda_ not modelled 11.1 5 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 94 d1iuka_ not modelled 11.1 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 95 c3al0B_ not modelled 11.1 26 PDB header:ligase/rna Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b; PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state. 96 c1vraA_ not modelled 10.9 16 PDB header:transferase Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj; PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution 97 d1p17b_ not modelled 10.9 18 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 98 d1f7ua3 not modelled 10.8 14 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Family:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 99 c2c4kD_ not modelled 10.8 21 PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0