Fold library entry viewer: d1jqka_

Added to library: Tue Mar 16 13:45:09 2010
Links to external resources

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	T	A	W	H	R	Y	E	K	Q	Q	P	Q	C	G	F	G	S	A	G	L	C	C	R	I	C	L	K	G	P	C	R	I	D	P	F	G	E	G	P	K	Y	G	V	C	G	A	D	R	D	T	I	V	A	R	H	L	V	R	M	I	A	A	G	T	A	A	H	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S								T					S	S	T	T							S	S	S	S	S			B		T	T			B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	G	R	H	I	A	L	A	M	Q	H	I	S	Q	G	E	L	H	D	Y	S	I	R	D	E	A	K	L	Y	A	I	A	K	T	L	G	V	A	T	E	G	R	G	L	L	A	I	V	G	D	L	A	A	I	T	L	G	D	F	Q	N	Q	D	Y	D	K	P	C	A	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T			T	T				T	T											T	T				T	T	T																T	T	T				T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	A	A	S	L	T	P	R	R	V	K	R	L	G	D	L	G	L	L	P	H	N	I	D	A	S	V	A	Q	T	M	S	R	T	H	V	G	C	D	A	D	P	T	N	L	I	L	G	G	L	R	V	A	M	A	D	L	D	G	S	M	L	A	T	E	L	S	D	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S												T		S		S													T	S	T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	G	T	P	Q	P	V	V	S	A	A	N	L	G	V	M	K	R	G	A	V	N	I	A	V	N	G	H	N	P	M	L	S	D	I	I	C	D	V	A	A	D	L	R	D	E	A	I	A	A	G	A	A	E	G	I	N	I	I	G	I	C	C	T	G	H	E	V	M	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S					T	T								S	S															T	T	T					T	T		T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	H	G	V	P	L	A	T	N	Y	L	S	Q	E	L	P	I	L	T	G	A	L	E	A	M	V	V	D	V	Q	C	I	M	P	S	L	P	R	I	A	E	C	F	H	T	Q	I	I	T	T	D	K	H	N	K	I	S	G	A	T	H	V	P	F	D	E	H	K	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S								S	T	T	T	T					T	T									S	S	S			T	T							T	S	S								T	T				T	T	S							G	G	G
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	E	T	A	K	T	I	I	R	M	A	I	A	A	F	G	R	R	D	P	N	R	V	A	I	P	A	F	K	Q	K	S	I	V	G	F	S	A	E	A	V	V	A	A	L	A	K	V	N	A	D	D	P	L	K	P	L	V	D	N	V	V	N	G	N	I	Q	G	I	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S		T	T	S																									T	T		S	S		T											T	S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	F	V	G	C	N	T	T	K	V	Q	Q	D	S	A	Y	V	D	L	A	K	S	L	A	K	R	N	V	L	V	L	A	T	G	C	A	A	G	A	F	A	K	A	G	L	M	T	S	E	A	T	T	Q	Y	A	G	E	G	L	K	G	V	L	S	A	I	G	T	A	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S		T	T													T	T																	T		S	S								S															T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	L	G	G	P	L	P	L	V	M	H	M	G	S	C	V	D	N	S	R	A	V	A	L	A	T	A	L	A	N	K	L	G	V	D	L	S	D	L	P	L	V	A	S	A	P	E	C	M	S	E	K	A	L	A	I	G	S	W	A	V	T	I	G	L	P	T	H	V	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S				S						S	S	T	T															T	T			T	T	T	S	S						T	T			S														T						S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Sequence	V	P	P	V	I	G	S	Q	I	V	T	K	L	V	T	E	T	A	K	D	L	V	G	G	Y	F	I	V	D	T	D	P	K	S	A	G	D	K	L	Y	A	A	I	Q	E	R	R	A	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	T										T						T	S							S																			T

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PDB structure

FASTA sequence

Hidden Markov model

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