PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1ldbA_

Fold library id	PDB Header	Molecule	Title
c1ldbA_	PDB header: oxidoreductase(choh(d)-nad(a))	Chain: A: PDB Molecule: apo-l-lactate dehydrogenase;	PDBTitle: structure determination and refinement of bacillus2 stearothermophilus lactate dehydrogenase

Links to external resources
Added to library: Tue Mar 16 12:13:59 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K N N G G A R V V V I G A G F V G A S Y V F A L M N Q G I A D E I V L I D A N E S K A I G D A M D F N H G K V F A P K P V D I W D Y D D C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S T T T
S
S S G G G T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R D A D L V V I C A G A N D L V D K N I A I F R S I V E S V M A S G F Q G L F L V A T N P V D I L T Y A T W K F S G L P H E R V I G S G T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
T T
S
S S
T T S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L D T A R F R F L L G E Y F S V A P Q N V H A Y I I G E H G D T E L P V W S Q A Y I G V M P I D L E R I F V N V R D A A Y Q I I E K K G A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
G G G
B
T T T T
T T
T T
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y Y G I A M G L A R V T R A I L H N E N A I L T V S A Y L D G L Y G E R D V Y I G V P A V I N R N G I R E V I E I E L N D D E K N R F H H S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S S S
S S
T T
S
T T T T

. . . . . . . . . 290 . . . .

Sequence A A T L K S V L A R A F T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	N	N	G	G	A	R	V	V	V	I	G	A	G	F	V	G	A	S	Y	V	F	A	L	M	N	Q	G	I	A	D	E	I	V	L	I	D	A	N	E	S	K	A	I	G	D	A	M	D	F	N	H	G	K	V	F	A	P	K	P	V	D	I	W	D	Y	D	D	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S			S	S								S												T	T	T			S							S	S															G	G	G	T	T								G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	D	A	D	L	V	V	I	C	A	G	A	N	D	L	V	D	K	N	I	A	I	F	R	S	I	V	E	S	V	M	A	S	G	F	Q	G	L	F	L	V	A	T	N	P	V	D	I	L	T	Y	A	T	W	K	F	S	G	L	P	H	E	R	V	I	G	S	G	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		S																													T	T			S							S	S																T	T	S					G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	D	T	A	R	F	R	F	L	L	G	E	Y	F	S	V	A	P	Q	N	V	H	A	Y	I	I	G	E	H	G	D	T	E	L	P	V	W	S	Q	A	Y	I	G	V	M	P	I	D	L	E	R	I	F	V	N	V	R	D	A	A	Y	Q	I	I	E	K	K	G	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T													T	T	S		G	G	G							B		T	T	T	T						T	T				T	T														S	S									S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	Y	G	I	A	M	G	L	A	R	V	T	R	A	I	L	H	N	E	N	A	I	L	T	V	S	A	Y	L	D	G	L	Y	G	E	R	D	V	Y	I	G	V	P	A	V	I	N	R	N	G	I	R	E	V	I	E	I	E	L	N	D	D	E	K	N	R	F	H	H	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T												S	S	S	S	S		S	S											T	T												S		T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Sequence	A	A	T	L	K	S	V	L	A	R	A	F	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T					S