Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AE76
DateThu Jan 5 11:22:43 GMT 2012
Unique Job IDd8fba9a41138998c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1c9ka_
Top template information
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
Confidence and coverage
Confidence:100.0% Coverage: 94%
170 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MMILVTGGARSGKSRHAEALIGDSSQVLYIATSQILDDEMAARIEHHRQGRPEHWRTVER
Secondary structure 






















SS confidence 



























































Disorder  ?

















































?







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   .........70.........80.........90.........100.........110.........120
Sequence  WQHLDELIHADINPNEVVLLECVTTMVTNLLFDYGGDKDPDEWDYQAMEQAINAEIQSLI
Secondary structure 





















SS confidence 



























































Disorder 



































??


?

















Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  AACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAGRVNQQLAAAANEVWLVVSGIGVKI
Secondary structure 



















SS confidence 



























































Disorder 


























































?
Disorder confidence 



























































 
   .
Sequence  K
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1c9k chain A

3D model

Region: 2 - 181
Aligned: 170
Modelled: 180
Confidence: 100.0%
Identity: 82%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1mo6 chain A domain 1

3D model

Region: 2 - 134
Aligned: 117
Modelled: 133
Confidence: 97.8%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1xp8 chain A

3D model

Region: 1 - 134
Aligned: 117
Modelled: 122
Confidence: 97.7%
Identity: 15%
PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"

Phyre2

PDB 2dfl chain A

3D model

Region: 1 - 137
Aligned: 128
Modelled: 137
Confidence: 97.6%
Identity: 16%
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: crystal structure of left-handed rada filament

Phyre2

PDB 1t4g chain A

3D model

Region: 1 - 137
Aligned: 128
Modelled: 137
Confidence: 97.5%
Identity: 20%
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: atpase in complex with amp-pnp

Phyre2

PDB 2rec chain B

3D model

Region: 2 - 133
Aligned: 115
Modelled: 132
Confidence: 97.5%
Identity: 12%
PDB header:helicase
PDB COMPND:

Phyre2

PDB 2zro chain A

3D model

Region: 1 - 134
Aligned: 125
Modelled: 134
Confidence: 97.5%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv

Phyre2

PDB 1xp8 chain A domain 1

3D model

Region: 2 - 138
Aligned: 119
Modelled: 124
Confidence: 97.5%
Identity: 17%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1u94 chain A domain 1

3D model

Region: 2 - 138
Aligned: 122
Modelled: 127
Confidence: 97.4%
Identity: 13%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 3lda chain A

3D model

Region: 2 - 137
Aligned: 118
Modelled: 121
Confidence: 97.4%
Identity: 22%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: yeast rad51 h352y filament interface mutant

Phyre2

PDB 3hr8 chain A

3D model

Region: 2 - 134
Aligned: 128
Modelled: 129
Confidence: 97.3%
Identity: 12%
PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca

Phyre2

PDB 1ube chain A domain 1

3D model

Region: 1 - 134
Aligned: 117
Modelled: 134
Confidence: 97.3%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 2i1q chain A domain 2

3D model

Region: 2 - 134
Aligned: 125
Modelled: 133
Confidence: 97.3%
Identity: 17%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1szp chain A domain 2

3D model

Region: 2 - 134
Aligned: 120
Modelled: 120
Confidence: 97.2%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1v5w chain A

3D model

Region: 2 - 134
Aligned: 125
Modelled: 125
Confidence: 97.0%
Identity: 13%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1szp chain C

3D model

Region: 2 - 138
Aligned: 118
Modelled: 118
Confidence: 97.0%
Identity: 24%
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein rad51;
PDBTitle: a crystal structure of the rad51 filament

Phyre2

PDB 2zjb chain B

3D model

Region: 2 - 134
Aligned: 125
Modelled: 125
Confidence: 97.0%
Identity: 11%
PDB header:recombination
Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog;
PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant

Phyre2

PDB 1pzn chain A domain 2

3D model

Region: 2 - 142
Aligned: 132
Modelled: 141
Confidence: 96.9%
Identity: 21%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1tf7 chain A domain 2

3D model

Region: 2 - 135
Aligned: 116
Modelled: 117
Confidence: 96.9%
Identity: 13%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1n0w chain A

3D model

Region: 2 - 136
Aligned: 119
Modelled: 119
Confidence: 96.8%
Identity: 15%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2
1

d1c9ka_
2

d1mo6a1
3

c1xp8A_
4

c2dflA_
5

c1t4gA_
6

c2recB_
7

c2zroA_
8

d1xp8a1
9

d1u94a1
10

c3ldaA_
11

c3hr8A_
12

d1ubea1
13

d2i1qa2
14

d1szpa2
15

d1v5wa_
16

c1szpC_
17

c2zjbB_
18

d1pzna2
19

d1tf7a2
20

d1n0wa_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1c9ka_



100.0 82 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
2d1mo6a1



97.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
3c1xp8A_



97.7 15 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
4c2dflA_



97.6 16 PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: crystal structure of left-handed rada filament
5c1t4gA_



97.5 20 PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: atpase in complex with amp-pnp
6c2recB_



97.5 12 PDB header:helicase
PDB COMPND:
7c2zroA_



97.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
8d1xp8a1



97.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
9d1u94a1



97.4 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
10c3ldaA_



97.4 22 PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: yeast rad51 h352y filament interface mutant
11c3hr8A_



97.3 12 PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
12d1ubea1



97.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
13d2i1qa2



97.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
14d1szpa2



97.2 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
15d1v5wa_



97.0 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
16c1szpC_



97.0 24 PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein rad51;
PDBTitle: a crystal structure of the rad51 filament
17c2zjbB_



97.0 11 PDB header:recombination
Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog;
PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant
18d1pzna2



96.9 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
19d1tf7a2



96.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
20d1n0wa_



96.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
21c2ztsB_



not modelled 96.6 13 PDB header:atp-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein ph0186;
PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
22c1u9iA_



not modelled 96.6 15 PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
23c3exaD_



not modelled 96.4 22 PDB header:transferase
Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate
PDBTitle: crystal structure of the full-length trna2 isopentenylpyrophosphate transferase (bh2366) from3 bacillus halodurans, northeast structural genomics4 consortium target bhr41.
24c1xx6B_



not modelled 96.3 21 PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26.
25d1tmka_



not modelled 96.1 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
26c2rh5B_



not modelled 96.1 24 PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: structure of apo adenylate kinase from aquifex aeolicus
27c3cmvG_



not modelled 96.1 13 PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
28d1nlfa_



not modelled 96.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
29c3bh0A_



not modelled 96.0 16 PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
30c2z0hA_



not modelled 95.8 20 PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase in complex with dtdp2 and adp from thermotoga maritima
31c2w0mA_



not modelled 95.8 14 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
32d1p3ja1



not modelled 95.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
33c1pznG_



not modelled 95.7 19 PDB header:recombination
Chain: G: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
34c2q6tB_



not modelled 95.6 12 PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
35c2cvhB_



not modelled 95.6 17 PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair and recombination protein radb;
PDBTitle: crystal structure of the radb recombinase
36c3bgwD_



not modelled 95.6 19 PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
37c3fozB_



not modelled 95.6 21 PDB header:transferase/rna
Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase;
PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe)
38c3dmdA_



not modelled 95.5 20 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
39c2jatA_



not modelled 95.5 21 PDB header:transferase
Chain: A: PDB Molecule:deoxyguanosine kinase;
PDBTitle: structure of deoxyadenosine kinase from m.mycoides with2 products dcmp and a flexible dcdp bound
40c2j7pA_



not modelled 95.5 11 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
41d2bdta1



not modelled 95.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Atu3015-like
42c2pbrB_



not modelled 95.5 38 PDB header:transferase
Chain: B: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5
43d1zina1



not modelled 95.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
44c2qy9A_



not modelled 95.4 17 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
45c3io5B_



not modelled 95.4 8 PDB header:dna binding protein
Chain: B: PDB Molecule:recombination and repair protein;
PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4
46d1akya1



not modelled 95.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
47d2cdna1



not modelled 95.3 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
48c2cnwF_



not modelled 95.3 11 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
49d1e4va1



not modelled 95.3 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
50c3r8cB_



not modelled 95.3 28 PDB header:transferase
Chain: B: PDB Molecule:cytidylate kinase;
PDBTitle: crystal structure of cytidylate kinase (cmk) from mycobacterium2 abscessus
51c3a8tA_



not modelled 95.3 20 PDB header:transferase
Chain: A: PDB Molecule:adenylate isopentenyltransferase;
PDBTitle: plant adenylate isopentenyltransferase in complex with atp
52c2eu8B_



not modelled 95.3 21 PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of a thermostable mutant of bacillus2 subtilis adenylate kinase (q199r)
53d1s3ga1



not modelled 95.2 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
54d2ak3a1



not modelled 95.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
55d1y63a_



not modelled 95.1 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
56d1zaka1



not modelled 95.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
57c2yhsA_



not modelled 95.0 17 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
58c1ly1A_



not modelled 95.0 32 PDB header:transferase
Chain: A: PDB Molecule:polynucleotide kinase;
PDBTitle: structure and mechanism of t4 polynucleotide kinase
59d1ly1a_



not modelled 95.0 32 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
60c2ccjA_



not modelled 95.0 15 PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of s. aureus thymidylate kinase complexed2 with thymidine monophosphate
61c2kjqA_



not modelled 95.0 21 PDB header:replication
Chain: A: PDB Molecule:dnaa-related protein;
PDBTitle: solution structure of protein nmb1076 from neisseria meningitidis.2 northeast structural genomics consortium target mr101b.
62c3ch4B_



not modelled 94.9 24 PDB header:transferase
Chain: B: PDB Molecule:phosphomevalonate kinase;
PDBTitle: the crystal structure of human phosphomavelonate kinase at2 1.8 a resolution
63d1teva_



not modelled 94.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
64c1ankA_



not modelled 94.9 24 PDB header:transferase(phosphotransferase)
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: the closed conformation of a highly flexible protein: the2 structure of e. coli adenylate kinase with bound amp and3 amppnp
65c1q57G_



not modelled 94.9 13 PDB header:transferase
Chain: G: PDB Molecule:dna primase/helicase;
PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7
66c2ak2A_



not modelled 94.8 17 PDB header:phosphotransferase
Chain: A: PDB Molecule:adenylate kinase isoenzyme-2;
PDBTitle: adenylate kinase isoenzyme-2
67c3ld9D_



not modelled 94.8 13 PDB header:transferase
Chain: D: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase from ehrlichia chaffeensis at2 2.15a resolution
68c1vmaA_



not modelled 94.7 13 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
69c2ak3B_



not modelled 94.6 14 PDB header:transferase (phosphotransferase)
Chain: B: PDB Molecule:adenylate kinase isoenzyme-3;
PDBTitle: the three-dimensional structure of the complex between2 mitochondrial matrix adenylate kinase and its substrate3 amp at 1.85 angstroms resolution
70c2ar7A_



not modelled 94.6 16 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase 4;
PDBTitle: crystal structure of human adenylate kinase 4, ak4
71c1s3gA_



not modelled 94.6 24 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from bacillus2 globisporus
72c2w0sB_



not modelled 94.6 11 PDB header:transferase
Chain: B: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate
73c2ja1A_



not modelled 94.6 18 PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor.
74c2ze5A_



not modelled 94.6 20 PDB header:transferase
Chain: A: PDB Molecule:isopentenyl transferase;
PDBTitle: crystal structure of adenosine phosphate-isopentenyltransferase
75c3c8uA_



not modelled 94.5 30 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
76d1vhta_



not modelled 94.5 43 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
77c3crqA_



not modelled 94.4 18 PDB header:transferase
Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate
PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel
78c2h92C_



not modelled 94.4 28 PDB header:transferase
Chain: C: PDB Molecule:cytidylate kinase;
PDBTitle: crystal structure of staphylococcus aureus cytidine2 monophosphate kinase in complex with cytidine-5'-3 monophosphate
79d1uf9a_



not modelled 94.4 43 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
80c2w58B_



not modelled 94.4 15 PDB header:hydrolase
Chain: B: PDB Molecule:primosome component (helicase loader);
PDBTitle: crystal structure of the dnai
81c2ql6H_



not modelled 94.3 16 PDB header:signaling protein,transferase
Chain: H: PDB Molecule:nicotinamide riboside kinase 1;
PDBTitle: human nicotinamide riboside kinase (nrk1)
82c2ia5C_



not modelled 94.3 34 PDB header:transferase
Chain: C: PDB Molecule:polynucleotide kinase;
PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium.
83c3hdtB_



not modelled 94.3 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940
84c2xb4A_



not modelled 94.2 25 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structures of zinc containing adenylate kinase from2 desulfovibrio gigas
85c2vyeA_



not modelled 94.2 11 PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
86d1uj2a_



not modelled 94.2 38 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
87c3asyB_



not modelled 94.1 27 PDB header:transferase
Chain: B: PDB Molecule:uridine kinase;
PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8
88d1q3ta_



not modelled 94.1 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
89c2vp4D_



not modelled 94.0 17 PDB header:transferase
Chain: D: PDB Molecule:deoxynucleoside kinase;
PDBTitle: structural studies of nucleoside analog and feedback2 inhibitor binding to drosophila melanogaster3 multisubstrate deoxyribonucleoside kinase
90c3akyA_



not modelled 94.0 23 PDB header:adenylate kinase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: stability, activity and structure of adenylate kinase2 mutants
91c1zakB_



not modelled 94.0 24 PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: adenylate kinase from maize in complex with the inhibitor2 p1,p5-bis(adenosine-5'-)pentaphosphate (ap5a)
92d1zp6a1



not modelled 93.9 34 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Atu3015-like
93c3gmtB_



not modelled 93.8 13 PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from burkholderia pseudomallei
94c3dm5A_



not modelled 93.8 10 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
95c2grjH_



not modelled 93.8 32 PDB header:transferase
Chain: H: PDB Molecule:dephospho-coa kinase;
PDBTitle: crystal structure of dephospho-coa kinase (ec 2.7.1.24)2 (dephosphocoenzyme a kinase) (tm1387) from thermotoga maritima at3 2.60 a resolution
96d1xbta1



not modelled 93.6 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Type II thymidine kinase
97d1m7gb_



not modelled 93.5 43 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Adenosine-5'phosphosulfate kinase (APS kinase)
98d1ak2a1



not modelled 93.5 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
99d1yj5a2



not modelled 93.4 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
100c3tr0A_



not modelled 93.3 13 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: structure of guanylate kinase (gmk) from coxiella burnetii
101d1deka_



not modelled 93.3 36 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
102c2gesA_



not modelled 93.2 40 PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase;
PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)
103d1znwa1



not modelled 93.2 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
104c3tqcB_



not modelled 93.2 30 PDB header:transferase
Chain: B: PDB Molecule:pantothenate kinase;
PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii
105c2yvuA_



not modelled 93.2 33 PDB header:transferase
Chain: A: PDB Molecule:probable adenylyl-sulfate kinase;
PDBTitle: crystal structure of ape1195
106c3ec2A_



not modelled 93.1 14 PDB header:replication
Chain: A: PDB Molecule:dna replication protein dnac;
PDBTitle: crystal structure of the dnac helicase loader
107c3b9qA_



not modelled 93.1 16 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
108c2f6rA_



not modelled 93.1 40 PDB header:transferase
Chain: A: PDB Molecule:bifunctional coenzyme a synthase;
PDBTitle: crystal structure of bifunctional coenzyme a synthase (coa synthase):2 (18044849) from mus musculus at 1.70 a resolution
109c1znyA_



not modelled 93.1 18 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of mycobacterium tuberculosis guanylate kinase in2 complex with gdp
110c2plrB_



not modelled 92.9 38 PDB header:transferase
Chain: B: PDB Molecule:probable thymidylate kinase;
PDBTitle: crystal structure of dtmp kinase (st1543) from sulfolobus tokodaii2 strain7
111d1kaga_



not modelled 92.9 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
112c3cm0A_



not modelled 92.9 18 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from thermus2 thermophilus hb8
113d1jjva_



not modelled 92.8 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
114d1ukza_



not modelled 92.7 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
115c3a4mB_



not modelled 92.7 38 PDB header:transferase
Chain: B: PDB Molecule:l-seryl-trna(sec) kinase;
PDBTitle: crystal structure of archaeal o-phosphoseryl-trna(sec)2 kinase
116d1sq5a_



not modelled 92.7 35 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
117c2iy3A_



not modelled 92.7 15 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
118d1gsia_



not modelled 92.5 33 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
119c3h0kA_



not modelled 92.5 39 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0200 protein sso1041;
PDBTitle: crystal structure of an adenylated kinase related protein from2 sulfolobus solfataricus to 3.25a
120c1ueiB_



not modelled 92.5 38 PDB header:transferase
Chain: B: PDB Molecule:uridine-cytidine kinase 2;
PDBTitle: crystal structure of human uridine-cytidine kinase 22 complexed with a feedback-inhibitor, utp

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0