PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1zakB_

Fold library id	PDB Header	Molecule	Title
c1zakB_	PDB header: transferase	Chain: B: PDB Molecule: adenylate kinase;	PDBTitle: adenylate kinase from maize in complex with the inhibitor2 p1,p5-bis(adenosine-5'-)pentaphosphate (ap5a)

Links to external resources
Added to library: Tue Mar 16 11:58:10 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A D P L K V M I S G A P A S G K G T Q C E L I K T K Y Q L A H I S A G D L L R A E I A A G S E N G K R A K E F M E K G Q L V P D E I V V N M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T S S
T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V K E R L R Q P D A Q E N G W L L D G Y P R S Y S Q A M A L E T L E I R P D T F I L L D V P D E L L V E R V V G R R L D P V T G K I Y H L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T
S
S T T T
S
T T
T T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y S P P E N E E I A S R L T Q R F D D T E E K V K L R L E T Y Y Q N I E S L L S T Y E N I I V K V Q G D A T V D A V F A K I D E L L G S I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S G G G G G
B
T T
T T T T
S S

. . . . . . . . . 220

Sequence E K K N E M V S S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	D	P	L	K	V	M	I	S	G	A	P	A	S	G	K	G	T	Q	C	E	L	I	K	T	K	Y	Q	L	A	H	I	S	A	G	D	L	L	R	A	E	I	A	A	G	S	E	N	G	K	R	A	K	E	F	M	E	K	G	Q	L	V	P	D	E	I	V	V	N	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S								S	T	T	S	S																														T													T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	K	E	R	L	R	Q	P	D	A	Q	E	N	G	W	L	L	D	G	Y	P	R	S	Y	S	Q	A	M	A	L	E	T	L	E	I	R	P	D	T	F	I	L	L	D	V	P	D	E	L	L	V	E	R	V	V	G	R	R	L	D	P	V	T	G	K	I	Y	H	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S						T						S				S									T	T	T				S																	T	T					T	T	T						S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	S	P	P	E	N	E	E	I	A	S	R	L	T	Q	R	F	D	D	T	E	E	K	V	K	L	R	L	E	T	Y	Y	Q	N	I	E	S	L	L	S	T	Y	E	N	I	I	V	K	V	Q	G	D	A	T	V	D	A	V	F	A	K	I	D	E	L	L	G	S	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S				S	S	G	G	G	G	G		B			T	T			T	T																			T	T										S	S
	.	.	.	.	.	.	.	.	.	220
Sequence	E	K	K	N	E	M	V	S	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T