PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3r8cB_

Fold library id	PDB Header	Molecule	Title
c3r8cB_	PDB header: transferase	Chain: B: PDB Molecule: cytidylate kinase;	PDBTitle: crystal structure of cytidylate kinase (cmk) from mycobacterium2 abscessus

Links to external resources
Added to library: Sat Apr 2 08:50:36 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S M V V A V D G P S G T G K S S V A K E L A R Q L G A S Y L D T G A M Y R I V T L W V L R A G V D L T D P A A I A A A T D Q V P M S V S S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S T T
T
T T
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P D A Q T A L L A G E D V S V P I R G N E V T G A V S A V S A V P A V R E R L V R Q Q R E L A E S S G A V V V E G R D I G T V V L P D A D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T G G G S T S T T S S S S S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . .

Sequence K I Y L T A S A Q A R A Q R R N L A D V Q R R D H L D S T R A V S P L R P A E D A L E V D T S D M T Q E Q V V A H L L D L V R T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	M	V	V	A	V	D	G	P	S	G	T	G	K	S	S	V	A	K	E	L	A	R	Q	L	G	A	S	Y	L	D	T	G	A	M	Y	R	I	V	T	L	W	V	L	R	A	G	V	D	L	T	D	P	A	A	I	A	A	A	T	D	Q	V	P	M	S	V	S	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S	S	S												T	T																					T			T	T								T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	D	A	Q	T	A	L	L	A	G	E	D	V	S	V	P	I	R	G	N	E	V	T	G	A	V	S	A	V	S	A	V	P	A	V	R	E	R	L	V	R	Q	Q	R	E	L	A	E	S	S	G	A	V	V	V	E	G	R	D	I	G	T	V	V	L	P	D	A	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T							T	T				T	T	G	G	G	S												T	S																	T	T	S	S					S	S	S							T	T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence	K	I	Y	L	T	A	S	A	Q	A	R	A	Q	R	R	N	L	A	D	V	Q	R	R	D	H	L	D	S	T	R	A	V	S	P	L	R	P	A	E	D	A	L	E	V	D	T	S	D	M	T	Q	E	Q	V	V	A	H	L	L	D	L	V	R	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															S	S	S						T	T							T	T