Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	K	I	K	I	G	L	A	L	G	S	G	A	A	R	G	W	S	H	I	G	V	I	N	A	L	K	K	V	G	I	E	I	D	I	V	A	G	C	S	I	G	S	L	V	G	A	A	Y	A	C	D	R	L	S	A	L	E	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	V	T	S	F	S	Y	W	D	V	L	R	L	M	D	L	S	W	Q	R	G	G	L	L	R	G	E	R	V	F	N	Q	Y	R	E	I	M	P	E	T	E	I	E	N	C	S	R	R	F	A	A	V	A	T	N	L	S	T	G	R
Secondary structure
SS confidence
Disorder										?	?		?			?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	L	W	F	T	E	G	D	L	H	L	A	I	R	A	S	C	S	I	P	G	L	M	A	P	V	A	H	N	G	Y	W	L	V	D	G	A	V	V	N	P	I	P	I	S	L	T	R	A	L	G	A	D	I	V	I	A	V	D	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	H	D	A	H	L	M	Q	Q	D	L	L	S	F	N	V	S	E	E	N	S	E	N	G	D	S	L	P	W	H	A	R	L	K	E	R	L	G	S	I	T	T	R	R	A	V	T	A	P	T	A	T	E	I	M	T	T	S	I	Q
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?						?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	L	E	N	R	L	K	R	N	R	M	A	G	D	P	P	D	I	L	I	Q	P	V	C	P	Q	I	S	T	L	D	F	H	R	A	H	A	A	I	A	A	G	Q	L	A	V	E	R	K	M	D	E	L	L	P	L	V	R	T	N
Secondary structure
SS confidence
Disorder																																																											?	?	?
Disorder confidence
		.
Sequence		I
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1oxw chain A Region: 1 - 300 Aligned: 278 Modelled: 278 Confidence: 100.0% Identity: 19% Fold: FabD/lysophospholipase-like Superfamily: FabD/lysophospholipase-like Family: Patatin Phyre2 PDB 1cjy chain A domain 2 Region: 4 - 191 Aligned: 181 Modelled: 188 Confidence: 99.3% Identity: 23% Fold: FabD/lysophospholipase-like Superfamily: FabD/lysophospholipase-like Family: Lysophospholipase Phyre2 PDB 1cjy chain B Region: 4 - 53 Aligned: 50 Modelled: 50 Confidence: 98.2% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:protein (cytosolic phospholipase a2); PDBTitle: human cytosolic phospholipase a2 Phyre2 PDB 1mla chain A domain 1 Region: 18 - 62 Aligned: 45 Modelled: 45 Confidence: 84.6% Identity: 16% Fold: FabD/lysophospholipase-like Superfamily: FabD/lysophospholipase-like Family: FabD-like Phyre2 PDB 3l4e chain A Region: 7 - 47 Aligned: 38 Modelled: 38 Confidence: 81.8% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e Phyre2 PDB 3im8 chain A Region: 15 - 57 Aligned: 43 Modelled: 43 Confidence: 79.5% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase; PDBTitle: crystal structure of mcat from streptococcus pneumoniae Phyre2 PDB 3rgi chain A Region: 15 - 64 Aligned: 50 Modelled: 50 Confidence: 78.8% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:disd protein; PDBTitle: trans-acting transferase from disorazole synthase Phyre2 PDB 2jfk chain D Region: 15 - 64 Aligned: 50 Modelled: 50 Confidence: 78.2% Identity: 18% PDB header:transferase Chain: D: PDB Molecule:fatty acid synthase; PDBTitle: structure of the mat domain of human fas with malonyl-coa Phyre2 PDB 2drh chain D Region: 7 - 35 Aligned: 29 Modelled: 29 Confidence: 76.9% Identity: 14% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:361aa long hypothetical d-aminopeptidase; PDBTitle: crystal structure of the ph0078 protein from pyrococcus horikoshii ot3 Phyre2 PDB 3ptw chain A Region: 15 - 64 Aligned: 50 Modelled: 50 Confidence: 74.7% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124 Phyre2 PDB 1fye chain A Region: 7 - 47 Aligned: 41 Modelled: 41 Confidence: 71.9% Identity: 15% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Aspartyl dipeptidase PepE Phyre2 PDB 3n5i chain C Region: 7 - 35 Aligned: 29 Modelled: 29 Confidence: 71.5% Identity: 17% PDB header:hydrolase Chain: C: PDB Molecule:beta-peptidyl aminopeptidase; PDBTitle: crystal structure of the precursor (s250a mutant) of the n-terminal2 beta-aminopeptidase bapa Phyre2 PDB 2cuy chain A Region: 18 - 64 Aligned: 47 Modelled: 47 Confidence: 70.5% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:malonyl coa-[acyl carrier protein] transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from thermus thermophilus hb8 Phyre2 PDB 3en0 chain A Region: 7 - 46 Aligned: 40 Modelled: 40 Confidence: 70.2% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase Phyre2 PDB 3tqe chain A Region: 15 - 64 Aligned: 50 Modelled: 50 Confidence: 69.3% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:malonyl-coa-[acyl-carrier-protein] transacylase; PDBTitle: structure of the malonyl coa-acyl carrier protein transacylase (fabd)2 from coxiella burnetii Phyre2 PDB 3een chain A Region: 15 - 64 Aligned: 50 Modelled: 50 Confidence: 68.9% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acp transacylase; PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (fabd), xoo0880, from xanthomonas oryzae pv. oryzae kacc10331 Phyre2 PDB 2hun chain B Region: 1 - 38 Aligned: 34 Modelled: 38 Confidence: 68.4% Identity: 21% PDB header:lyase Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3 Phyre2 PDB 1nm2 chain A domain 1 Region: 23 - 110 Aligned: 88 Modelled: 88 Confidence: 67.5% Identity: 14% Fold: FabD/lysophospholipase-like Superfamily: FabD/lysophospholipase-like Family: FabD-like Phyre2 PDB 1o6c chain A Region: 2 - 43 Aligned: 41 Modelled: 42 Confidence: 65.6% Identity: 15% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 3g87 chain A Region: 14 - 64 Aligned: 51 Modelled: 51 Confidence: 61.6% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from burkholderia pseudomallei using dried seaweed as nucleant or3 protease Phyre2 1 d1oxwa_ 2 d1cjya2 3 c1cjyB_ 4 d1mlaa1 5 c3l4eA_ 6 c3im8A_ 7 c3rgiA_ 8 c2jfkD_ 9 c2drhD_ 10 c3ptwA_ 11 d1fyea_ 12 c3n5iC_ 13 c2cuyA_ 14 c3en0A_ 15 c3tqeA_ 16 c3eenA_ 17 c2hunB_ 18 d1nm2a1 19 d1o6ca_ 20 c3g87A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1oxwa_ 100.0 19 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Patatin 2 d1cjya2 99.3 23 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Lysophospholipase 3 c1cjyB_ 98.2 24 PDB header:hydrolase Chain: B: PDB Molecule:protein (cytosolic phospholipase a2); PDBTitle: human cytosolic phospholipase a2 4 d1mlaa1 84.6 16 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:FabD-like 5 c3l4eA_ 81.8 18 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 6 c3im8A_ 79.5 21 PDB header:transferase Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase; PDBTitle: crystal structure of mcat from streptococcus pneumoniae 7 c3rgiA_ 78.8 16 PDB header:transferase Chain: A: PDB Molecule:disd protein; PDBTitle: trans-acting transferase from disorazole synthase 8 c2jfkD_ 78.2 18 PDB header:transferase Chain: D: PDB Molecule:fatty acid synthase; PDBTitle: structure of the mat domain of human fas with malonyl-coa 9 c2drhD_ 76.9 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:361aa long hypothetical d-aminopeptidase; PDBTitle: crystal structure of the ph0078 protein from pyrococcus horikoshii ot3 10 c3ptwA_ 74.7 20 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124 11 d1fyea_ 71.9 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 12 c3n5iC_ 71.5 17 PDB header:hydrolase Chain: C: PDB Molecule:beta-peptidyl aminopeptidase; PDBTitle: crystal structure of the precursor (s250a mutant) of the n-terminal2 beta-aminopeptidase bapa 13 c2cuyA_ 70.5 21 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-[acyl carrier protein] transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from thermus thermophilus hb8 14 c3en0A_ 70.2 18 PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase 15 c3tqeA_ 69.3 16 PDB header:transferase Chain: A: PDB Molecule:malonyl-coa-[acyl-carrier-protein] transacylase; PDBTitle: structure of the malonyl coa-acyl carrier protein transacylase (fabd)2 from coxiella burnetii 16 c3eenA_ 68.9 20 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acp transacylase; PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (fabd), xoo0880, from xanthomonas oryzae pv. oryzae kacc10331 17 c2hunB_ 68.4 21 PDB header:lyase Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3 18 d1nm2a1 67.5 14 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:FabD-like 19 d1o6ca_ 65.6 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 20 c3g87A_ 61.6 18 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from burkholderia pseudomallei using dried seaweed as nucleant or3 protease 21 c1e3hA_ not modelled 61.2 24 PDB header:polyribonucleotide transferase Chain: A: PDB Molecule:guanosine pentaphosphate synthetase; PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi2 enzyme 22 d1b65a_ not modelled 60.2 8 Fold:DmpA/ArgJ-like Superfamily:DmpA/ArgJ-like Family:DmpA-like 23 c3cdiA_ not modelled 59.8 30 PDB header:transferase Chain: A: PDB Molecule:polynucleotide phosphorylase; PDBTitle: crystal structure of e. coli pnpase 24 c2qo3A_ not modelled 56.9 20 PDB header:transferase Chain: A: PDB Molecule:eryaii erythromycin polyketide synthase modules 3 and 4; PDBTitle: crystal structure of [ks3][at3] didomain from module 3 of 6-2 deoxyerthronolide b synthase 25 c3l3bA_ not modelled 56.6 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 26 c2jjmH_ not modelled 54.0 29 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 27 c2h1yA_ not modelled 53.8 10 PDB header:transferase Chain: A: PDB Molecule:malonyl coenzyme a-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (mcat) from helicobacter pylori 28 c3kwpA_ not modelled 52.8 17 PDB header:transferase Chain: A: PDB Molecule:predicted methyltransferase; PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis 29 c2cdh9_ not modelled 52.7 26 PDB header:transferase Chain: 9: PDB Molecule:acetyl transferase; PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution. 30 c3qatB_ not modelled 52.2 21 PDB header:transferase Chain: B: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of acyl-carrier-protein-s-malonyltransferase from2 bartonella henselae 31 c2g2oA_ not modelled 49.9 18 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: structure of e.coli fabd complexed with sulfate 32 c3ezwD_ not modelled 47.8 14 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 33 c3d3kD_ not modelled 47.4 11 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 34 c2przB_ not modelled 47.1 14 PDB header:transferase Chain: B: PDB Molecule:orotate phosphoribosyltransferase 1; PDBTitle: s. cerevisiae orotate phosphoribosyltransferase complexed2 with omp 35 c3e18A_ not modelled 46.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of nad-binding protein from listeria innocua 36 c3mjdA_ not modelled 46.5 21 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.9 angstrom crystal structure of orotate2 phosphoribosyltransferase (pyre) francisella tularensis. 37 d2cdqa3 not modelled 45.3 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 38 c2hg4A_ not modelled 45.2 22 PDB header:transferase Chain: A: PDB Molecule:6-deoxyerythronolide b synthase; PDBTitle: structure of the ketosynthase-acyltransferase didomain of module 52 from debs. 39 c3lwbA_ not modelled 45.0 17 PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis 40 c3ot5D_ not modelled 43.3 16 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 41 c3e5nA_ not modelled 43.1 22 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 42 d1jzta_ not modelled 41.7 11 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 43 d1wyza1 not modelled 40.4 15 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 44 c3hhdC_ not modelled 40.4 19 PDB header:transferase, hydrolase Chain: C: PDB Molecule:fatty acid synthase; PDBTitle: structure of the human fatty acid synthase ks-mat didomain2 as a framework for inhibitor design. 45 d2cdqa2 not modelled 39.9 30 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 46 d1wdea_ not modelled 39.8 10 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 47 c2qj3B_ not modelled 39.0 21 PDB header:transferase Chain: B: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: mycobacterium tuberculosis fabd 48 c3i1iA_ not modelled 38.4 28 PDB header:transferase Chain: A: PDB Molecule:homoserine o-acetyltransferase; PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis 49 c3nbmA_ not modelled 38.1 5 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 50 d2hmfa2 not modelled 36.6 24 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 51 c3ezoA_ not modelled 36.3 20 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of acyl-carrier-protein s-2 malonyltransferase from burkholderia pseudomallei 1710b 52 c2iyaB_ not modelled 35.2 13 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 53 c1qzuB_ not modelled 34.8 21 PDB header:lyase Chain: B: PDB Molecule:hypothetical protein mds018; PDBTitle: crystal structure of human phosphopantothenoylcysteine decarboxylase 54 c3krnB_ not modelled 34.7 21 PDB header:hydrolase Chain: B: PDB Molecule:protein c14a4.5, confirmed by transcript evidence; PDBTitle: crystal structure of c. elegans cell-death-related nuclease 5(crn-5) 55 c3axgN_ not modelled 34.0 35 PDB header:hydrolase Chain: N: PDB Molecule:endotype 6-aminohexanoat-oligomer hydrolase; PDBTitle: structure of 6-aminohexanoate-oligomer hydrolase 56 d2j0wa2 not modelled 33.5 24 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 57 c2dg2D_ not modelled 32.5 17 PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein 58 d1vhva_ not modelled 32.4 16 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 59 c3l6gA_ not modelled 32.1 16 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 60 d1r88a_ not modelled 31.4 24 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Mycobacterial antigens 61 c1kh2D_ not modelled 31.0 50 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 62 d1dqza_ not modelled 31.0 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Mycobacterial antigens 63 d2d81a1 not modelled 30.5 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:PHB depolymerase-like 64 c2vz8B_ not modelled 30.4 22 PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase; PDBTitle: crystal structure of mammalian fatty acid synthase 65 c3mcuF_ not modelled 29.6 16 PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. 66 d1j20a1 not modelled 29.1 50 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 67 d3c8da2 not modelled 28.7 29 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase 68 c2cwdA_ not modelled 28.2 19 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase; PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8 69 c3d3jA_ not modelled 27.6 11 PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 70 c2e8bA_ not modelled 27.4 23 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of the putative protein (aq1419) from aquifex2 aeolicus vf5 71 d1lh0a_ not modelled 27.2 27 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 72 d2je6b2 not modelled 26.8 3 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 73 c2x0dA_ not modelled 26.8 8 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 74 c3cdjA_ not modelled 26.4 30 PDB header:transferase Chain: A: PDB Molecule:polynucleotide phosphorylase; PDBTitle: crystal structure of the e. coli kh/s1 domain truncated2 pnpase 75 c3flaB_ not modelled 25.9 24 PDB header:hydrolase Chain: B: PDB Molecule:rifr; PDBTitle: rifr - type ii thioesterase from rifamycin nrps/pks biosynthetic2 pathway - form 1 76 d1d1qa_ not modelled 25.8 16 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 77 c2d4wA_ not modelled 25.8 13 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 78 c3n2lA_ not modelled 25.5 27 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 2.1 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase (pyre) from vibrio cholerae o1 biovar eltor3 str. n16961 79 c2pvpB_ not modelled 25.3 14 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori 80 d1p3y1_ not modelled 25.1 14 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 81 c1qgeD_ not modelled 25.0 23 PDB header:hydrolase Chain: D: PDB Molecule:protein (triacylglycerol hydrolase); PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase 82 c3kcqA_ not modelled 24.3 24 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 anaplasma phagocytophilum 83 c3e4dD_ not modelled 24.0 24 PDB header:hydrolase Chain: D: PDB Molecule:esterase d; PDBTitle: structural and kinetic study of an s-formylglutathione2 hydrolase from agrobacterium tumefaciens 84 c2qmqA_ not modelled 23.9 17 PDB header:signaling protein Chain: A: PDB Molecule:protein ndrg2; PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution 85 c3fcxA_ not modelled 23.9 19 PDB header:hydrolase Chain: A: PDB Molecule:s-formylglutathione hydrolase; PDBTitle: crystal structure of human esterase d 86 c1e4eB_ not modelled 23.5 22 PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase 87 c3im9A_ not modelled 23.4 13 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of mcat from staphylococcus aureus 88 d1ve2a1 not modelled 23.3 26 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 89 c3zquA_ not modelled 23.0 17 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 90 c1vl2C_ not modelled 22.6 25 PDB header:ligase Chain: C: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of argininosuccinate synthase (tm1780) from2 thermotoga maritima at 1.65 a resolution 91 c3tqtB_ not modelled 22.4 20 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii 92 d1f0na_ not modelled 22.3 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Mycobacterial antigens 93 d2vata1 not modelled 22.0 24 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase 94 d1sfra_ not modelled 21.7 24 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Mycobacterial antigens 95 d2ax3a2 not modelled 21.6 23 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 96 d1vhqa_ not modelled 21.4 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 97 c2dpnB_ not modelled 20.8 15 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 98 c3tqrA_ not modelled 20.1 21 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii 99 d1zh8a1 not modelled 20.0 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0