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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3e5nA_

Fold library idPDB HeaderMoleculeTitle
c3e5nA_PDB header: ligaseChain: A: PDB Molecule: d-alanine-d-alanine ligase a;PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331


Added to library: Sat Aug 28 21:59:54 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHR
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Known secondary structure (DSSP)


SSTTS
TTT
TTS

GGGSSTT
TTT


 .........80.........90.........100.........110.........120.........130.........140
Sequence SGRGVALLPGAQQQQLRPIQQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDM
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Known secondary structure (DSSP)




TT
SSS








S
SSSTT

BSS

B
 .........150.........160.........170.........180.........190.........200.........210
Sequence AKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALA
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Known secondary structure (DSSP) TT

B

TT


SSSBS
SSTT

SGGGTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence YDHKVLVEAAVAGREIECAVLGNAVPHASVCGEVVVEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMAR
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Known secondary structure (DSSP) T
S


S
SSS



SS
SS
T

S
 .........290.........300.........310.........320.........330.........340
Sequence VDVFLCADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELALERHTDDQLL
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Known secondary structure (DSSP)
TT

SS


STT
TTT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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