Email l.a.kelley@imperial.ac.uk Description P0A7H6 Date Thu Jan 5 11:05:41 GMT 2012 Unique Job ID c82a3feb35fd5895

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vdda_ 100.0 46 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 2 c1vddC_ 100.0 45 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 3 c2h5xA_ 96.3 41 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 4 d1bvsa2 95.9 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 5 d1ixra1 95.9 36 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 6 d1cuka2 95.7 41 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 7 d1gkub3 95.4 23 Fold:Prokaryotic type I DNA topoisomerase Superfamily:Prokaryotic type I DNA topoisomerase Family:Prokaryotic type I DNA topoisomerase 8 c2o59B_ 94.9 20 PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase 3; PDBTitle: structure of e. coli topoisomerase iii in complex with an 8-2 base single stranded oligonucleotide. frozen in glycerol3 ph 8.0 9 d1i7da_ 94.8 22 Fold:Prokaryotic type I DNA topoisomerase Superfamily:Prokaryotic type I DNA topoisomerase Family:Prokaryotic type I DNA topoisomerase 10 c2hr5B_ 94.8 27 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 11 c1hjpA_ 94.4 42 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 12 c2au3A_ 94.4 18 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) 13 c1dvbA_ 94.2 18 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 14 d1t6t1_ 94.1 18 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 15 d2noha1 93.8 28 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 16 c1nuiA_ 93.8 13 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 17 d1nuia1 93.5 13 Fold:DNA primase core Superfamily:DNA primase core Family:Primase fragment of primase-helicase protein 18 c3f10A_ 93.5 26 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 19 c1yuzB_ 93.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 20 c1yqmA_ 93.0 28 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 21 c3n0uB_ not modelled 93.0 21 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 22 c3lpeF_ not modelled 92.9 25 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 23 d1pu6a_ not modelled 92.9 19 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 24 c3s6iA_ not modelled 92.8 25 PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. 25 d1mw9x_ not modelled 92.5 33 Fold:Prokaryotic type I DNA topoisomerase Superfamily:Prokaryotic type I DNA topoisomerase Family:Prokaryotic type I DNA topoisomerase 26 d1mpga1 not modelled 92.5 29 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 27 c3fhgA_ not modelled 92.4 21 PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) 28 c1q57G_ not modelled 92.4 11 PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 29 c1ko9A_ not modelled 92.2 31 PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 30 d2fcja1 not modelled 92.0 21 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 31 c2yg8B_ not modelled 91.9 25 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans 32 c1mpgB_ not modelled 91.8 30 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 33 c2jhnB_ not modelled 91.7 21 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna-glycosylase; PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus 34 c1gl9B_ not modelled 91.6 25 PDB header:topoisomerase Chain: B: PDB Molecule:reverse gyrase; PDBTitle: archaeoglobus fulgidus reverse gyrase complexed with adpnp 35 d2fmpa1 not modelled 90.9 24 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 36 d2abka_ not modelled 90.6 38 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 37 d1rrqa1 not modelled 90.3 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 38 d1kg2a_ not modelled 90.1 31 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 39 c3kntC_ not modelled 89.7 16 PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine 40 d1orna_ not modelled 89.6 31 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 41 c2w9mB_ not modelled 89.5 12 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 42 d1keaa_ not modelled 89.4 23 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 43 c3n5nX_ not modelled 89.3 28 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 44 d2a1jb1 not modelled 89.1 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 45 c8iczA_ not modelled 88.9 21 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 46 c1rrqA_ not modelled 88.4 19 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 47 d2bcqa1 not modelled 88.0 23 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 48 d1jmsa1 not modelled 87.6 15 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 49 c2csdB_ not modelled 87.5 29 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 50 c2ihmA_ not modelled 87.5 38 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 51 c2gb5B_ not modelled 87.5 18 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 52 d2edua1 not modelled 87.2 38 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 53 d1nzpa_ not modelled 86.4 23 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 54 d2bgwa1 not modelled 86.3 24 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 55 c1ixrA_ not modelled 85.9 43 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 56 d1kfta_ not modelled 84.9 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 57 c1kftA_ not modelled 84.9 23 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 58 c1kdhA_ not modelled 84.2 22 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 59 d1x2ia1 not modelled 83.3 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 60 c2gajA_ not modelled 83.0 28 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form 61 c1nomA_ not modelled 82.9 25 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 62 c2kp7A_ not modelled 82.2 14 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 63 d2duya1 not modelled 81.8 43 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 64 d2aq0a1 not modelled 81.6 24 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 65 c2bcuA_ not modelled 81.6 20 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 66 d1dk2a_ not modelled 81.3 36 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 67 c1s5lu_ not modelled 81.3 21 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 68 d2axtu1 not modelled 80.5 21 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 69 d1ngna_ not modelled 80.3 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 70 d1a77a1 not modelled 78.5 33 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 71 d1pzna1 not modelled 78.5 27 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 72 d3bzka1 not modelled 78.4 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 73 c1d8lA_ not modelled 78.1 28 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 74 d2vana1 not modelled 77.3 21 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 75 d1dgsa1 not modelled 77.0 36 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 76 c1b22A_ not modelled 77.0 17 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 77 d1b22a_ not modelled 77.0 17 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 78 d1mc8a1 not modelled 75.6 42 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 79 c2h56C_ not modelled 74.8 17 PDB header:hydrolase Chain: C: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of dna-3-methyladenine glycosidase (10174367) from2 bacillus halodurans at 2.55 a resolution 80 d1rxwa1 not modelled 74.8 42 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 81 d1o98a1 not modelled 74.6 21 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 82 d2a1ja1 not modelled 74.5 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 83 d2i1qa1 not modelled 74.5 28 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 84 c3cngC_ not modelled 74.3 14 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 85 d2csba3 not modelled 73.8 29 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 86 c3qeaZ_ not modelled 73.6 12 PDB header:hydrolase/dna Chain: Z: PDB Molecule:exonuclease 1; PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii) 87 d2fmpa2 not modelled 73.5 28 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 88 d1b43a1 not modelled 72.4 33 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 89 d1szpa1 not modelled 72.3 18 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 90 d1xo1a1 not modelled 70.6 25 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 91 c2r8kB_ not modelled 70.2 7 PDB header:replication, transferase/dna Chain: B: PDB Molecule:dna polymerase eta; PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna 92 d1ul1x1 not modelled 69.2 42 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 93 d2i5ha1 not modelled 69.1 44 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 94 c2i5hA_ not modelled 69.1 44 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 95 c2nrzB_ not modelled 68.5 24 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 96 d2apob1 not modelled 67.8 24 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 97 d1ryqa_ not modelled 67.8 17 Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like 98 d2bcqa2 not modelled 67.6 30 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 99 c1jihA_ not modelled 67.1 7 PDB header:translation Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: yeast dna polymerase eta 100 d1jiha2 not modelled 67.0 7 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 101 c1ut8B_ not modelled 66.5 25 PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease 102 d2ey4e1 not modelled 66.2 32 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 103 d1jmsa3 not modelled 64.6 25 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 104 d1nnqa2 not modelled 64.5 23 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 105 c1dd9A_ not modelled 64.2 26 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 106 d1dd9a_ not modelled 64.2 26 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 107 d2gy9m1 not modelled 63.5 18 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 108 c1jr3E_ not modelled 62.4 18 PDB header:transferase Chain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii 109 d1vk2a_ not modelled 61.9 10 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 110 c2aq4A_ not modelled 61.6 44 PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. 111 d1d8ba_ not modelled 61.4 23 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 112 c2izoA_ not modelled 60.3 33 PDB header:hydrolase Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex 113 c3fblA_ not modelled 59.7 18 PDB header:structural protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of orf132 of the archaeal virus acidianus2 filamentous virus 1 (afv1) 114 c1o98A_ not modelled 59.6 21 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 115 c2owoA_ not modelled 57.0 33 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 116 d1yuza2 not modelled 57.0 27 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 117 c1a77A_ not modelled 56.8 33 PDB header:5'-3' exo/endo nuclease Chain: A: PDB Molecule:flap endonuclease-1 protein; PDBTitle: flap endonuclease-1 from methanococcus jannaschii 118 c3q8lA_ not modelled 55.4 42 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ 119 d1lb2b_ not modelled 54.8 29 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 120 d1gm5a2 not modelled 54.3 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain