Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76553
DateThu Jan 5 12:24:31 GMT 2012
Unique Job IDc7d2bf2502a6ed3e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3bfjK_
Top template information
PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase
Confidence and coverage
Confidence:100.0% Coverage: 95%
375 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQNELQTALFQAFDTLNLQRVKTFSVPPVTLCGPGSVSSCGQQAQTRGLKHLFVMADSFL
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Disorder  ????










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   .........70.........80.........90.........100.........110.........120
Sequence  HQAGMTAGLTRSLTVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLD
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   .........130.........140.........150.........160.........170.........180
Sequence  AAKAVTLLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTVIIDAVSGRKQV
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   .........190.........200.........210.........220.........230.........240
Sequence  LAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAIEAYSALNATPFTDSLAIGAIAM
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   .........250.........260.........270.........280.........290.........300
Sequence  IGKSLPKAVGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGAALHIPHGLANA
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   .........310.........320.........330.........340.........350.........360
Sequence  MLLPTVMEFNRMVCRERFSQIGRALRTKKSDDRDAINAVSELIAEVGIGKRLGDVGATSA
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   .........370.........380.........390.....
Sequence  HYGAWAQAALEDICLRSNPRTASLEQIVGLYAAAQ
Secondary structure 














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??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3bfj chain K

3D model

Region: 20 - 394
Aligned: 375
Modelled: 375
Confidence: 100.0%
Identity: 35%
PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase

Phyre2

PDB 3ox4 chain D

3D model

Region: 22 - 394
Aligned: 373
Modelled: 373
Confidence: 100.0%
Identity: 37%
PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor

Phyre2

PDB 1vlj chain A

3D model

Region: 18 - 394
Aligned: 376
Modelled: 377
Confidence: 100.0%
Identity: 21%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1rrm chain A

3D model

Region: 23 - 394
Aligned: 370
Modelled: 370
Confidence: 100.0%
Identity: 38%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1oj7 chain A

3D model

Region: 22 - 394
Aligned: 370
Modelled: 373
Confidence: 100.0%
Identity: 23%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1o2d chain A

3D model

Region: 21 - 394
Aligned: 356
Modelled: 364
Confidence: 100.0%
Identity: 30%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 3hl0 chain B

3D model

Region: 20 - 394
Aligned: 342
Modelled: 350
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:maleylacetate reductase;
PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens

Phyre2

PDB 3iv7 chain B

3D model

Region: 17 - 394
Aligned: 345
Modelled: 360
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase iv;
PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution

Phyre2

PDB 3rf7 chain A

3D model

Region: 20 - 393
Aligned: 348
Modelled: 359
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution

Phyre2

PDB 3jzd chain A

3D model

Region: 20 - 394
Aligned: 345
Modelled: 354
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution

Phyre2

PDB 1jq5 chain A

3D model

Region: 22 - 395
Aligned: 333
Modelled: 335
Confidence: 100.0%
Identity: 23%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1ta9 chain A

3D model

Region: 16 - 395
Aligned: 335
Modelled: 343
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe

Phyre2

PDB 3uhj chain E

3D model

Region: 22 - 395
Aligned: 326
Modelled: 337
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: E: PDB Molecule:probable glycerol dehydrogenase;
PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021

Phyre2

PDB 1kq3 chain A

3D model

Region: 20 - 395
Aligned: 333
Modelled: 339
Confidence: 100.0%
Identity: 24%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 3ce9 chain A

3D model

Region: 22 - 393
Aligned: 325
Modelled: 332
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution

Phyre2

PDB 3okf chain A

3D model

Region: 21 - 395
Aligned: 333
Modelled: 344
Confidence: 100.0%
Identity: 14%
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae

Phyre2

PDB 1sg6 chain A

3D model

Region: 27 - 391
Aligned: 332
Modelled: 334
Confidence: 100.0%
Identity: 15%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Dehydroquinate synthase, DHQS

Phyre2

PDB 1xah chain A

3D model

Region: 26 - 368
Aligned: 291
Modelled: 315
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+

Phyre2

PDB 3clh chain A

3D model

Region: 28 - 395
Aligned: 293
Modelled: 303
Confidence: 100.0%
Identity: 14%
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori

Phyre2

PDB 2gru chain B

3D model

Region: 28 - 370
Aligned: 323
Modelled: 327
Confidence: 100.0%
Identity: 13%
PDB header:lyase
Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase;
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+

Phyre2
1

c3bfjK_
2

c3ox4D_
3

d1vlja_
4

d1rrma_
5

d1oj7a_
6

d1o2da_
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c3hl0B_
8

c3iv7B_
9

c3rf7A_
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c3jzdA_
11

d1jq5a_
12

c1ta9A_
13

c3uhjE_
14

d1kq3a_
15

c3ce9A_
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c3okfA_
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d1sg6a_
18

c1xahA_
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c3clhA_
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c2gruB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bfjK_



100.0 35 PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase
2c3ox4D_



100.0 37 PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor
3d1vlja_



100.0 21 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
4d1rrma_



100.0 38 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
5d1oj7a_



100.0 23 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
6d1o2da_



100.0 30 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
7c3hl0B_



100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:maleylacetate reductase;
PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens
8c3iv7B_



100.0 30 PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase iv;
PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution
9c3rf7A_



100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution
10c3jzdA_



100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution
11d1jq5a_



100.0 23 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
12c1ta9A_



100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe
13c3uhjE_



100.0 24 PDB header:oxidoreductase
Chain: E: PDB Molecule:probable glycerol dehydrogenase;
PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021
14d1kq3a_



100.0 24 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
15c3ce9A_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution
16c3okfA_



100.0 14 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae
17d1sg6a_



100.0 15 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
18c1xahA_



100.0 18 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+
19c3clhA_



100.0 14 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori
20c2gruB_



100.0 13 PDB header:lyase
Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase;
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+
21d1ujna_



not modelled 100.0 18 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
22c3orsD_



not modelled 97.1 22 PDB header:isomerase,biosynthetic protein
Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
23d1qcza_



not modelled 97.0 14 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
24d1o4va_



not modelled 97.0 16 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
25c3rggD_



not modelled 97.0 14 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
26c2fw9A_



not modelled 96.9 15 PDB header:lyase
Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
27d1u11a_



not modelled 96.9 15 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
28c3lp6D_



not modelled 96.9 17 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
29d2p1ra1



not modelled 96.7 21 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
30d1xmpa_



not modelled 96.6 18 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
31c3trhI_



not modelled 96.6 19 PDB header:lyase
Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase
PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
32d2jgra1



not modelled 96.5 16 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
33d2bona1



not modelled 96.4 16 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
34c2h31A_



not modelled 96.2 15 PDB header:ligase, lyase
Chain: A: PDB Molecule:multifunctional protein ade2;
PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
35d1u0ta_



not modelled 95.7 24 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
36c2ywxA_



not modelled 95.3 22 PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii
37d1qo0a_



not modelled 95.1 10 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
38c2qv7A_



not modelled 94.9 17 PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg
39d1pfka_



not modelled 94.1 28 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
40d4pfka_



not modelled 94.0 26 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
41c1zxxA_



not modelled 93.9 30 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
42c3s40C_



not modelled 93.0 17 PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
43c2j37W_



not modelled 92.9 18 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
44c2an1D_



not modelled 92.6 27 PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
45c2iy3A_



not modelled 92.3 15 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
46c3pfnB_



not modelled 92.3 19 PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase
47c2bonB_



not modelled 92.1 14 PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)
48c3opyB_



not modelled 92.1 22 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
49c3opyH_



not modelled 92.1 22 PDB header:transferase
Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
50d2f48a1



not modelled 91.7 15 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
51c3rfqC_



not modelled 91.5 21 PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
52c3snrA_



not modelled 91.4 12 PDB header:transport protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris.
53c3sg0A_



not modelled 91.1 16 PDB header:signaling protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2
54c3dm5A_



not modelled 90.9 24 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
55c3opyG_



not modelled 90.6 18 PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
56c3opyE_



not modelled 90.3 21 PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
57c1z0zC_



not modelled 90.0 22 PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
58d1z0sa1



not modelled 90.0 22 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
59c3o8oB_



not modelled 89.7 21 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase subunit beta;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
60c3hi0B_



not modelled 89.5 15 PDB header:hydrolase
Chain: B: PDB Molecule:putative exopolyphosphatase;
PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution
61c3i45A_



not modelled 89.4 12 PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of putative twin-arginine translocation pathway2 signal protein from rhodospirillum rubrum atcc 11170
62c3k2qA_



not modelled 89.4 20 PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
63c2j289_



not modelled 89.3 22 PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
64d1ewka_



not modelled 89.2 4 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
65c3i09A_



not modelled 89.1 11 PDB header:transport protein
Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein;
PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution
66c3eafA_



not modelled 89.0 11 PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein;
PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix
67d2qv7a1



not modelled 89.0 16 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
68c2higA_



not modelled 88.9 15 PDB header:transferase
Chain: A: PDB Molecule:6-phospho-1-fructokinase;
PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei.
69c3o8nA_



not modelled 88.8 18 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase, muscle type;
PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle
70c1qzwC_



not modelled 88.7 18 PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
71c3o8oC_



not modelled 88.5 21 PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
72c1t6dB_



not modelled 88.2 14 PDB header:hydrolase
Chain: B: PDB Molecule:exopolyphosphatase;
PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant
73c3mdqA_



not modelled 88.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution
74c3n0wA_



not modelled 87.8 22 PDB header:transport protein
Chain: A: PDB Molecule:abc branched chain amino acid family transporter,
PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution
75d1xi8a3



not modelled 87.4 16 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
76d2g2ca1



not modelled 87.1 16 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
77d1v4va_



not modelled 87.1 24 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
78c3cf4G_



not modelled 86.7 12 PDB header:oxidoreductase
Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
79c2i2aA_



not modelled 86.7 16 PDB header:transferase
Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1;
PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes
80d1vh3a_



not modelled 86.7 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
81c2q5cA_



not modelled 86.2 13 PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
82c3lopA_



not modelled 86.0 16 PDB header:substrate binding protein
Chain: A: PDB Molecule:substrate binding periplasmic protein;
PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum
83c2floA_



not modelled 85.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7
84c3tqrA_



not modelled 85.1 10 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii
85c3nhzA_



not modelled 85.1 23 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
86c2g4rB_



not modelled 85.0 13 PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga
87d2ji7a1



not modelled 84.9 16 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
88d1y5ea1



not modelled 84.7 18 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
89c3cerD_



not modelled 84.1 17 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:possible exopolyphosphatase-like protein;
PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13
90c3khtA_



not modelled 83.6 23 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator from hahella chejuensis
91c2is8A_



not modelled 83.6 9 PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
92d2f7wa1



not modelled 82.7 10 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
93c3dcjA_



not modelled 82.6 12 PDB header:transferase
Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide
PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative
94c2zwmA_



not modelled 81.8 19 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
95c2yhsA_



not modelled 81.8 14 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
96d1zpda1



not modelled 81.8 23 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
97c2xecD_



not modelled 81.7 15 PDB header:isomerase
Chain: D: PDB Molecule:putative maleate isomerase;
PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris
98d2pjua1



not modelled 81.7 15 Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
99c3l4eA_



not modelled 81.7 9 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
100d2ihta1



not modelled 81.6 13 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
101c2hqbA_



not modelled 81.5 11 PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator of comk gene;
PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
102c3h5lB_



not modelled 81.4 12 PDB header:transport protein
Chain: B: PDB Molecule:putative branched-chain amino acid abc
PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi
103d1mkza_



not modelled 80.8 12 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
104c1vmaA_



not modelled 80.5 19 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
105d1zesa1



not modelled 80.5 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
106c3q41B_



not modelled 80.2 14 PDB header:transport protein
Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1;
PDBTitle: crystal structure of the glun1 n-terminal domain (ntd)
107d2bw0a2



not modelled 80.2 11 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
108c3grcD_



not modelled 80.1 10 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
109c3dmdA_



not modelled 79.4 17 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
110c3a0rB_



not modelled 79.3 20 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
111d1a9xa4



not modelled 79.2 17 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
112c3b9qA_



not modelled 78.1 20 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
113d2a9pa1



not modelled 78.1 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
114c2o6lA_



not modelled 78.1 13 PDB header:transferase
Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7;
PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7
115c2pgnA_



not modelled 77.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:cyclohexane-1,2-dione hydrolase (cdh);
PDBTitle: the crystal structure of fad and thdp-dependent cyclohexane-1,2-dione2 hydrolase in complex with cyclohexane-1,2-dione
116c2e4wA_



not modelled 77.8 6 PDB header:signaling protein
Chain: A: PDB Molecule:metabotropic glutamate receptor 3;
PDBTitle: crystal structure of the extracellular region of the group ii2 metabotropic glutamate receptor complexed with 1s,3s-acpd
117c1ny5A_



not modelled 77.4 27 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
118d1di6a_



not modelled 77.3 16 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
119d1xhfa1



not modelled 77.1 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
120d1t9ba1



not modelled 77.0 26 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0