Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	F	K	K	L	S	R	R	T	F	L	T	A	S	S	A	L	A	F	L	H	T	P	F	A	R	A	L	P	A	R	Q	S	V	N	I	N	D	Y	N	P	H	D	W	I	A	S	F	K	Q	A	F	S	E	G	Q	T	V	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?					?														?	?			?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	P	A	G	L	V	C	D	N	I	N	T	G	I	F	I	P	P	G	K	T	L	H	I	L	G	S	L	R	G	N	G	R	G	R	F	V	L	Q	D	G	S	Q	V	T	G	E	D	G	G	S	M	H	N	I	T	L	D	V	R
Secondary structure
SS confidence
Disorder																												?	?	?																?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	S	D	C	T	I	K	G	L	T	M	S	G	F	G	P	V	T	Q	I	Y	I	G	G	K	N	K	R	V	M	R	N	L	I	I	D	N	L	T	V	S	H	A	N	Y	A	I	L	R	Q	G	F	H	N	Q	I	I	G	A	N
Secondary structure
SS confidence
Disorder												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	T	N	C	K	F	S	D	L	Q	G	D	A	I	E	W	N	V	A	I	N	D	R	D	I	L	I	S	D	H	V	I	E	R	I	N	C	T	N	G	K	I	N	W	G	I	G	I	G	L	A	G	S	T	Y	D	N	N	Y	P
Secondary structure
SS confidence
Disorder											?																																														?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	D	Q	A	V	K	N	F	V	V	A	N	I	T	G	S	D	C	R	Q	L	I	H	V	E	N	G	K	H	F	V	I	R	N	I	K	A	R	N	I	T	P	D	F	S	K	K	A	G	I	D	N	A	T	V	A	I	Y	G	C
Secondary structure
SS confidence
Disorder																																						?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	N	F	V	I	D	N	I	E	M	I	N	S	A	G	M	L	I	G	Y	G	V	I	K	G	K	Y	L	S	I	P	Q	N	F	R	V	N	D	I	Q	L	D	N	T	H	L	A	Y	K	L	R	G	I	Q	I	S	A	G	N	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	S	F	V	A	L	T	N	I	E	M	K	R	A	S	L	E	L	H	N	K	P	Q	H	F	F	M	R	N	I	N	V	M	Q	E	S	S	V	G	P	A	L	S	M	N	F	D	M	R	K	D	V	R	G	V	F	M	A	K	K
Secondary structure
SS confidence
Disorder								?										?	?														?	?	?	?		?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Sequence		E	T	L	L	S	L	A	N	V	H	A	V	N	E	K	G	Q	S	S	V	D	I	D	R	I	N	H	H	I	V	N	V	E	K	I	N	F	R	L	P	E	L	R	E
Secondary structure
SS confidence
Disorder										?			?		?		?	?		?	?	?	?																?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3jur chain A Region: 29 - 392 Aligned: 345 Modelled: 352 Confidence: 98.5% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:exo-poly-alpha-d-galacturonosidase; PDBTitle: the crystal structure of a hyperthermoactive exopolygalacturonase from2 thermotoga maritima Phyre2 PDB 2uve chain A Region: 30 - 372 Aligned: 307 Modelled: 334 Confidence: 98.1% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:exopolygalacturonase; PDBTitle: structure of yersinia enterocolitica family 282 exopolygalacturonase Phyre2 PDB 1bhe chain A Region: 44 - 318 Aligned: 260 Modelled: 268 Confidence: 97.8% Identity: 17% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 1rmg chain A Region: 26 - 346 Aligned: 287 Modelled: 293 Confidence: 97.1% Identity: 16% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 3gqn chain A Region: 35 - 370 Aligned: 287 Modelled: 290 Confidence: 96.5% Identity: 19% PDB header:viral protein Chain: A: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the pre-mature bacteriophage phi29 gene product2 12 Phyre2 PDB 1k5c chain A Region: 56 - 345 Aligned: 256 Modelled: 277 Confidence: 96.3% Identity: 17% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 3eqn chain B Region: 24 - 323 Aligned: 264 Modelled: 277 Confidence: 95.9% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:glucan 1,3-beta-glucosidase; PDBTitle: crystal structure of beta-1,3-glucanase from phanerochaete2 chrysosporium (lam55a) Phyre2 PDB 2iq7 chain D Region: 34 - 358 Aligned: 286 Modelled: 302 Confidence: 95.8% Identity: 18% PDB header:hydrolase Chain: D: PDB Molecule:endopolygalacturonase; PDBTitle: crystal structure of the polygalacturonase from colletotrichum lupini2 and its implications for the interaction with polygalacturonase-3 inhibiting proteins Phyre2 PDB 1czf chain B Region: 56 - 346 Aligned: 257 Modelled: 279 Confidence: 95.6% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:polygalacturonase ii; PDBTitle: endo-polygalacturonase ii from aspergillus niger Phyre2 PDB 1czf chain A Region: 56 - 346 Aligned: 257 Modelled: 283 Confidence: 95.6% Identity: 21% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 3gq8 chain A Region: 34 - 386 Aligned: 283 Modelled: 303 Confidence: 95.6% Identity: 24% PDB header:viral protein Chain: A: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the bacteriophage phi29 gene product2 12 n-terminal fragment in complex with 2-(n-3 cyclohexylamino)ethane sulfonic acid (ches) Phyre2 PDB 1ia5 chain A Region: 44 - 346 Aligned: 267 Modelled: 285 Confidence: 95.5% Identity: 21% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 2z8g chain B Region: 8 - 316 Aligned: 285 Modelled: 290 Confidence: 91.7% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:isopullulanase; PDBTitle: aspergillus niger atcc9642 isopullulanase complexed with isopanose Phyre2 PDB 1nhc chain A Region: 245 - 375 Aligned: 124 Modelled: 131 Confidence: 81.0% Identity: 18% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 1hg8 chain A Region: 245 - 375 Aligned: 124 Modelled: 131 Confidence: 79.0% Identity: 21% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Galacturonase Phyre2 PDB 1ogm chain X domain 2 Region: 54 - 310 Aligned: 240 Modelled: 254 Confidence: 71.6% Identity: 19% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Dextranase, catalytic domain Phyre2 PDB 1hf2 chain A domain 1 Region: 56 - 90 Aligned: 34 Modelled: 35 Confidence: 55.1% Identity: 41% Fold: Single-stranded right-handed beta-helix Superfamily: Cell-division inhibitor MinC, C-terminal domain Family: Cell-division inhibitor MinC, C-terminal domain Phyre2 PDB 1hf2 chain A Region: 56 - 90 Aligned: 34 Modelled: 35 Confidence: 53.4% Identity: 41% PDB header:cell division protein Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the bacterial cell-division inhibitor2 minc from t. maritima Phyre2 PDB 1dbg chain A Region: 51 - 274 Aligned: 207 Modelled: 211 Confidence: 52.2% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b Phyre2 PDB 1o88 chain A Region: 262 - 313 Aligned: 47 Modelled: 52 Confidence: 51.5% Identity: 17% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Pectate lyase-like Phyre2 1 c3jurA_ 2 c2uveA_ 3 d1bhea_ 4 d1rmga_ 5 c3gqnA_ 6 d1k5ca_ 7 c3eqnB_ 8 c2iq7D_ 9 c1czfB_ 10 d1czfa_ 11 c3gq8A_ 12 d1ia5a_ 13 c2z8gB_ 14 d1nhca_ 15 d1hg8a_ 16 d1ogmx2 17 d1hf2a1 18 c1hf2A_ 19 c1dbgA_ 20 d1o88a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3jurA_ 98.5 14 PDB header:hydrolase Chain: A: PDB Molecule:exo-poly-alpha-d-galacturonosidase; PDBTitle: the crystal structure of a hyperthermoactive exopolygalacturonase from2 thermotoga maritima 2 c2uveA_ 98.1 21 PDB header:hydrolase Chain: A: PDB Molecule:exopolygalacturonase; PDBTitle: structure of yersinia enterocolitica family 282 exopolygalacturonase 3 d1bhea_ 97.8 17 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 4 d1rmga_ 97.1 16 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 5 c3gqnA_ 96.5 19 PDB header:viral protein Chain: A: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the pre-mature bacteriophage phi29 gene product2 12 6 d1k5ca_ 96.3 17 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 7 c3eqnB_ 95.9 22 PDB header:hydrolase Chain: B: PDB Molecule:glucan 1,3-beta-glucosidase; PDBTitle: crystal structure of beta-1,3-glucanase from phanerochaete2 chrysosporium (lam55a) 8 c2iq7D_ 95.8 18 PDB header:hydrolase Chain: D: PDB Molecule:endopolygalacturonase; PDBTitle: crystal structure of the polygalacturonase from colletotrichum lupini2 and its implications for the interaction with polygalacturonase-3 inhibiting proteins 9 c1czfB_ 95.6 21 PDB header:hydrolase Chain: B: PDB Molecule:polygalacturonase ii; PDBTitle: endo-polygalacturonase ii from aspergillus niger 10 d1czfa_ 95.6 21 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 11 c3gq8A_ 95.6 24 PDB header:viral protein Chain: A: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the bacteriophage phi29 gene product2 12 n-terminal fragment in complex with 2-(n-3 cyclohexylamino)ethane sulfonic acid (ches) 12 d1ia5a_ 95.5 21 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 13 c2z8gB_ 91.7 21 PDB header:hydrolase Chain: B: PDB Molecule:isopullulanase; PDBTitle: aspergillus niger atcc9642 isopullulanase complexed with isopanose 14 d1nhca_ 81.0 18 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 15 d1hg8a_ 79.0 21 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 16 d1ogmx2 71.6 19 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Dextranase, catalytic domain 17 d1hf2a1 55.1 41 Fold:Single-stranded right-handed beta-helix Superfamily:Cell-division inhibitor MinC, C-terminal domain Family:Cell-division inhibitor MinC, C-terminal domain 18 c1hf2A_ 53.4 41 PDB header:cell division protein Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the bacterial cell-division inhibitor2 minc from t. maritima 19 c1dbgA_ 52.2 14 PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b 20 d1o88a_ 51.5 17 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 21 d1pcla_ not modelled 46.7 12 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 22 d1xqma_ not modelled 46.5 30 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 23 c1ogoX_ not modelled 44.9 20 PDB header:hydrolase Chain: X: PDB Molecule:dextranase; PDBTitle: dex49a from penicillium minioluteum complex with isomaltose 24 c3mezA_ not modelled 44.5 20 PDB header:sugar binding protein Chain: A: PDB Molecule:mannose-specific lectin 3 chain 1; PDBTitle: x-ray structural analysis of a mannose specific lectin from dutch2 crocus (crocus vernus) 25 c2xvsA_ not modelled 43.6 19 PDB header:antitumor protein Chain: A: PDB Molecule:tetratricopeptide repeat protein 5; PDBTitle: crystal structure of human ttc5 (strap) c-terminal ob2 domain 26 d2f2ha1 not modelled 38.8 28 Fold:Putative glucosidase YicI, C-terminal domain Superfamily:Putative glucosidase YicI, C-terminal domain Family:Putative glucosidase YicI, C-terminal domain 27 d1bn8a_ not modelled 38.6 22 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 28 c2pyhB_ not modelled 37.8 19 PDB header:isomerase Chain: B: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: azotobacter vinelandii mannuronan c-5 epimerase alge4 a-module2 complexed with mannuronan trisaccharide 29 d1j3pa_ not modelled 33.3 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 30 c1nkgA_ not modelled 30.2 30 PDB header:lyase Chain: A: PDB Molecule:rhamnogalacturonase b; PDBTitle: rhamnogalacturonan lyase from aspergillus aculeatus 31 d1idka_ not modelled 29.8 21 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectin lyase 32 c2dd9C_ not modelled 29.2 20 PDB header:luminescent protein Chain: C: PDB Molecule:green fluorescent protein; PDBTitle: a mutant of gfp-like protein from chiridius poppei 33 d2qqra1 not modelled 28.6 37 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 34 c1vblA_ not modelled 26.2 19 PDB header:lyase Chain: A: PDB Molecule:pectate lyase 47; PDBTitle: structure of the thermostable pectate lyase pl 47 35 c2qy1B_ not modelled 26.1 14 PDB header:lyase Chain: B: PDB Molecule:pectate lyase ii; PDBTitle: pectate lyase a31g/r236f from xanthomonas campestris 36 c2dpfB_ not modelled 25.6 25 PDB header:plant protein Chain: B: PDB Molecule:curculin; PDBTitle: crystal structure of curculin1 homodimer 37 c3rrrB_ not modelled 25.3 32 PDB header:viral protein Chain: B: PDB Molecule:fusion glycoprotein f0; PDBTitle: structure of the rsv f protein in the post-fusion conformation 38 d1bwud_ not modelled 25.0 13 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 39 c3jyvT_ not modelled 24.8 23 PDB header:ribosome Chain: T: PDB Molecule:s19e protein; PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution 40 d1x82a_ not modelled 24.7 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 41 c3r0eC_ not modelled 23.3 33 PDB header:sugar binding protein Chain: C: PDB Molecule:lectin; PDBTitle: structure of remusatia vivipara lectin 42 d1s0ua2 not modelled 21.3 78 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43 c3rkiB_ not modelled 21.0 32 PDB header:viral protein Chain: B: PDB Molecule:fusion glycoprotein f0; PDBTitle: structural basis for immunization with post-fusion rsv f to elicit2 high neutralizing antibody titers 44 c3u5ga_ not modelled 19.6 33 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 45 c3cfhB_ not modelled 19.5 31 PDB header:fluorescent protein Chain: B: PDB Molecule:gfp-like photoswitchable fluorescent protein; PDBTitle: photoswitchable red fluorescent protein psrfp, off-state 46 d1jpca_ not modelled 19.5 23 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 47 d1npla_ not modelled 19.0 28 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 48 d1pxza_ not modelled 18.7 12 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like 49 c2xzn5_ not modelled 17.9 28 PDB header:ribosome Chain: 5: PDB Molecule:ribosomal protein s26e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 50 c3lasA_ not modelled 17.2 31 PDB header:lyase Chain: A: PDB Molecule:putative carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase from streptococcus mutans to2 1.4 angstrom resolution 51 c3nezB_ not modelled 16.8 23 PDB header:fluorescent protein Chain: B: PDB Molecule:mrojoa; PDBTitle: mrojoa 52 c3kv4A_ not modelled 16.6 42 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 53 c1z8rA_ not modelled 15.8 50 PDB header:hydrolase Chain: A: PDB Molecule:coxsackievirus b4 polyprotein; PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51) 54 d1xd5a_ not modelled 15.7 25 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 55 c3iz6S_ not modelled 15.6 16 PDB header:ribosome Chain: S: PDB Molecule:40s ribosomal protein s19 (s19e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 56 c3mezB_ not modelled 15.1 10 PDB header:sugar binding protein Chain: B: PDB Molecule:mannose-specific lectin 3 chain 2; PDBTitle: x-ray structural analysis of a mannose specific lectin from dutch2 crocus (crocus vernus) 57 d1o12a1 not modelled 15.1 17 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA 58 d2hv2a1 not modelled 14.6 19 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 59 d2hrva_ not modelled 14.4 33 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 60 c2nlwA_ not modelled 14.4 16 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 PDBTitle: solution structure of the rrm domain of human eukaryotic2 initiation factor 3b 61 d2c5lc1 not modelled 13.9 43 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 62 c2wulB_ not modelled 13.9 27 PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin related protein 5; PDBTitle: crystal structure of the human glutaredoxin 5 with bound2 glutathione in an fes cluster 63 c3a0cA_ not modelled 13.8 19 PDB header:sugar binding protein Chain: A: PDB Molecule:mannose/sialic acid-binding lectin; PDBTitle: crystal structure of an anti-hiv mannose-binding lectin from2 polygonatum cyrtonema hua 64 c3grhA_ not modelled 13.6 17 PDB header:hydrolase Chain: A: PDB Molecule:acyl-coa thioester hydrolase ybgc; PDBTitle: crystal structure of escherichia coli ybhc 65 d2v7fa1 not modelled 13.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rps19E-like 66 c3b08H_ not modelled 13.1 43 PDB header:signaling protein/metal binding protein Chain: H: PDB Molecule:ranbp-type and c3hc4-type zinc finger-containing protein 1; PDBTitle: crystal structure of the mouse hoil1-l-nzf in complex with linear di-2 ubiquitin 67 c3ipzA_ not modelled 12.9 40 PDB header:electron transport, oxidoreductase Chain: A: PDB Molecule:monothiol glutaredoxin-s14, chloroplastic; PDBTitle: crystal structure of arabidopsis monothiol glutaredoxin atgrxcp 68 c2e7pC_ not modelled 12.7 47 PDB header:electron transport Chain: C: PDB Molecule:glutaredoxin; PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides 69 d1jnya2 not modelled 12.6 19 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 70 c3hz7A_ not modelled 12.5 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a 71 c2z6zA_ not modelled 12.4 26 PDB header:fluorescent protein Chain: A: PDB Molecule:fluorescent protein dronpa; PDBTitle: crystal structure of a photoswitchable gfp-like protein2 dronpa in the bright-state 72 c3l4nA_ not modelled 12.4 27 PDB header:oxidoreductase Chain: A: PDB Molecule:monothiol glutaredoxin-6; PDBTitle: crystal structure of yeast monothiol glutaredoxin grx6 73 c2jacA_ not modelled 11.7 47 PDB header:electron transport Chain: A: PDB Molecule:glutaredoxin-1; PDBTitle: glutaredoxin grx1p c30s mutant from yeast 74 c3c1sA_ not modelled 10.9 50 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin-1; PDBTitle: crystal structure of grx1 in glutathionylated form 75 d1moua_ not modelled 10.9 23 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 76 d1jhba_ not modelled 10.7 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 77 d1kj1d_ not modelled 10.6 14 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 78 c3r0eD_ not modelled 10.6 20 PDB header:sugar binding protein Chain: D: PDB Molecule:lectin; PDBTitle: structure of remusatia vivipara lectin 79 d1nkga3 not modelled 10.1 20 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Rhamnogalacturonase B, RhgB, N-terminal domain 80 c3pu3A_ not modelled 9.9 45 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 2; PDBTitle: phf2 jumonji domain-nog complex 81 c3k3nA_ not modelled 9.8 50 PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 82 d1ggxa_ not modelled 9.8 27 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 83 c2gw4D_ not modelled 9.8 23 PDB header:luminescent protein Chain: D: PDB Molecule:kaede; PDBTitle: crystal structure of stony coral fluorescent protein kaede, red form 84 c2w3nA_ not modelled 9.7 31 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase 2; PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans 85 d1ktea_ not modelled 9.7 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 86 d2rkya1 not modelled 9.7 57 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 87 d1bwua_ not modelled 9.6 17 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 88 d1jdqa_ not modelled 9.4 50 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 89 c3gztF_ not modelled 9.3 86 PDB header:virus Chain: F: PDB Molecule:outer capsid glycoprotein vp7; PDBTitle: vp7 recoated rotavirus dlp 90 d2naca2 not modelled 9.3 20 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 91 d1lbqa_ not modelled 9.3 29 Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase 92 d1xd6a_ not modelled 9.2 30 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 93 c1ylkA_ not modelled 9.2 25 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein rv1284/mt1322; PDBTitle: crystal structure of rv1284 from mycobacterium tuberculosis in complex2 with thiocyanate 94 d2cg7a1 not modelled 9.1 57 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 95 c2zo7A_ not modelled 9.0 24 PDB header:luminescent protein Chain: A: PDB Molecule:cyan/green-emitting gfp-like protein, kusabira-cyan mutant PDBTitle: crystal structure of a kusabira-cyan mutant (kcy-r1), a cyan/green-2 emitting gfp-like protein 96 c2hzfA_ not modelled 8.9 27 PDB header:electron transport, oxidoreductase Chain: A: PDB Molecule:glutaredoxin-1; PDBTitle: crystal structures of a poxviral glutaredoxin in the oxidized and2 reduced states show redox-correlated structural changes 97 d2rkya2 not modelled 8.9 71 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 98 c2eceA_ not modelled 8.7 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:462aa long hypothetical selenium-binding protein; PDBTitle: x-ray structure of hypothetical selenium-binding protein2 from sulfolobus tokodaii, st0059 99 c2ddcA_ not modelled 8.6 34 PDB header:luminescent protein Chain: A: PDB Molecule:photoconvertible fluorescent protein; PDBTitle: unique behavior of a histidine responsible for an2 engineered green-to-red photoconversion process

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0