Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	V	T	T	L	D	I	I	R	S	N	T	F	V	A	E	L	K	G	K	Q	P
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	Q	V	P	G	V	S	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Sequence		M	G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1smk chain D Region: 1 - 145 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 64% PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase, glyoxysomal; PDBTitle: mature and translocatable forms of glyoxysomal malate2 dehydrogenase have different activities and stabilities3 but similar crystal structures Phyre2 PDB 1sev chain A Region: 1 - 145 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 64% PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase, glyoxysomal precursor; PDBTitle: mature and translocatable forms of glyoxysomal malate2 dehydrogenase have different activities and stabilities3 but similar crystal structures Phyre2 PDB 1mld chain A Region: 1 - 145 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 65% PDB header:oxidoreductase(nad(a)-choh(d)) Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: refined structure of mitochondrial malate dehydrogenase2 from porcine heart and the consensus structure for3 dicarboxylic acid oxidoreductases Phyre2 PDB 2dfd chain D Region: 1 - 145 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 64% PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of human malate dehydrogenase type 2 Phyre2 PDB 2pwz chain G Region: 1 - 145 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: G: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the apo form of e.coli malate dehydrogenase Phyre2 PDB 1hyh chain A Region: 1 - 145 Aligned: 134 Modelled: 145 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase (choh(d)-nad+(a)) Chain: A: PDB Molecule:l-2-hydroxyisocaproate dehydrogenase; PDBTitle: crystal structure of l-2-hydroxyisocaproate dehydrogenase from2 lactobacillus confusus at 2.2 angstroms resolution-an example of3 strong asymmetry between subunits Phyre2 PDB 2d4a chain C Region: 1 - 145 Aligned: 135 Modelled: 145 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: C: PDB Molecule:malate dehydrogenase; PDBTitle: structure of the malate dehydrogenase from aeropyrum pernix Phyre2 PDB 1gv1 chain D Region: 1 - 145 Aligned: 136 Modelled: 145 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for thermophilic protein stability:2 structures of thermophilic and mesophilic malate3 dehydrogenases Phyre2 PDB 3dl2 chain A Region: 1 - 145 Aligned: 128 Modelled: 145 Confidence: 100.0% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 3; PDBTitle: hexagonal structure of the ldh domain of human ubiquitin-2 conjugating enzyme e2-like isoform a Phyre2 PDB 1y6j chain A Region: 1 - 145 Aligned: 134 Modelled: 145 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: l-lactate dehydrogenase from clostridium thermocellum cth-1135 Phyre2 PDB 1ur5 chain C Region: 1 - 145 Aligned: 136 Modelled: 145 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: C: PDB Molecule:malate dehydrogenase; PDBTitle: stabilization of a tetrameric malate dehydrogenase by2 introduction of a disulfide bridge at the dimer/dimer3 interface Phyre2 PDB 1oju chain A Region: 1 - 145 Aligned: 130 Modelled: 145 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: 2.8 a resolution structure of malate dehydrogenase from2 archaeoglobus fulgidus in complex with etheno-nad. Phyre2 PDB 3nep chain X Region: 1 - 145 Aligned: 135 Modelled: 145 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: X: PDB Molecule:malate dehydrogenase; PDBTitle: 1.55a resolution structure of malate dehydrogenase from salinibacter2 ruber Phyre2 PDB 1ldb chain A Region: 1 - 145 Aligned: 133 Modelled: 144 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-l-lactate dehydrogenase; PDBTitle: structure determination and refinement of bacillus2 stearothermophilus lactate dehydrogenase Phyre2 PDB 1pzf chain D Region: 1 - 145 Aligned: 136 Modelled: 145 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: D: PDB Molecule:lactate dehydrogenase; PDBTitle: t.gondii ldh1 ternary complex with apad+ and oxalate Phyre2 PDB 2e37 chain B Region: 1 - 145 Aligned: 134 Modelled: 145 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: structure of tt0471 protein from thermus thermophilus Phyre2 PDB 1ez4 chain B Region: 1 - 145 Aligned: 134 Modelled: 145 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:lactate dehydrogenase; PDBTitle: crystal structure of non-allosteric l-lactate dehydrogenase2 from lactobacillus pentosus at 2.3 angstrom resolution Phyre2 PDB 3gvi chain B Region: 1 - 145 Aligned: 136 Modelled: 145 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of lactate/malate dehydrogenase from2 brucella melitensis in complex with adp Phyre2 PDB 3fi9 chain B Region: 1 - 145 Aligned: 135 Modelled: 144 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from porphyromonas2 gingivalis Phyre2 PDB 1u4s chain A Region: 1 - 145 Aligned: 134 Modelled: 142 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: plasmodium falciparum lactate dehydrogenase complexed with 2,6-2 naphthalenedisulphonic acid Phyre2 1 c1smkD_ 2 c1sevA_ 3 c1mldA_ 4 c2dfdD_ 5 c2pwzG_ 6 c1hyhA_ 7 c2d4aC_ 8 c1gv1D_ 9 c3dl2A_ 10 c1y6jA_ 11 c1ur5C_ 12 c1ojuA_ 13 c3nepX_ 14 c1ldbA_ 15 c1pzfD_ 16 c2e37B_ 17 c1ez4B_ 18 c3gviB_ 19 c3fi9B_ 20 c1u4sA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1smkD_ 100.0 64 PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase, glyoxysomal; PDBTitle: mature and translocatable forms of glyoxysomal malate2 dehydrogenase have different activities and stabilities3 but similar crystal structures 2 c1sevA_ 100.0 64 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase, glyoxysomal precursor; PDBTitle: mature and translocatable forms of glyoxysomal malate2 dehydrogenase have different activities and stabilities3 but similar crystal structures 3 c1mldA_ 100.0 65 PDB header:oxidoreductase(nad(a)-choh(d)) Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: refined structure of mitochondrial malate dehydrogenase2 from porcine heart and the consensus structure for3 dicarboxylic acid oxidoreductases 4 c2dfdD_ 100.0 64 PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of human malate dehydrogenase type 2 5 c2pwzG_ 100.0 100 PDB header:oxidoreductase Chain: G: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the apo form of e.coli malate dehydrogenase 6 c1hyhA_ 100.0 21 PDB header:oxidoreductase (choh(d)-nad+(a)) Chain: A: PDB Molecule:l-2-hydroxyisocaproate dehydrogenase; PDBTitle: crystal structure of l-2-hydroxyisocaproate dehydrogenase from2 lactobacillus confusus at 2.2 angstroms resolution-an example of3 strong asymmetry between subunits 7 c2d4aC_ 100.0 19 PDB header:oxidoreductase Chain: C: PDB Molecule:malate dehydrogenase; PDBTitle: structure of the malate dehydrogenase from aeropyrum pernix 8 c1gv1D_ 100.0 24 PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for thermophilic protein stability:2 structures of thermophilic and mesophilic malate3 dehydrogenases 9 c3dl2A_ 100.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 3; PDBTitle: hexagonal structure of the ldh domain of human ubiquitin-2 conjugating enzyme e2-like isoform a 10 c1y6jA_ 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: l-lactate dehydrogenase from clostridium thermocellum cth-1135 11 c1ur5C_ 100.0 27 PDB header:oxidoreductase Chain: C: PDB Molecule:malate dehydrogenase; PDBTitle: stabilization of a tetrameric malate dehydrogenase by2 introduction of a disulfide bridge at the dimer/dimer3 interface 12 c1ojuA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: 2.8 a resolution structure of malate dehydrogenase from2 archaeoglobus fulgidus in complex with etheno-nad. 13 c3nepX_ 100.0 27 PDB header:oxidoreductase Chain: X: PDB Molecule:malate dehydrogenase; PDBTitle: 1.55a resolution structure of malate dehydrogenase from salinibacter2 ruber 14 c1ldbA_ 100.0 23 PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-l-lactate dehydrogenase; PDBTitle: structure determination and refinement of bacillus2 stearothermophilus lactate dehydrogenase 15 c1pzfD_ 100.0 30 PDB header:oxidoreductase Chain: D: PDB Molecule:lactate dehydrogenase; PDBTitle: t.gondii ldh1 ternary complex with apad+ and oxalate 16 c2e37B_ 100.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: structure of tt0471 protein from thermus thermophilus 17 c1ez4B_ 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:lactate dehydrogenase; PDBTitle: crystal structure of non-allosteric l-lactate dehydrogenase2 from lactobacillus pentosus at 2.3 angstrom resolution 18 c3gviB_ 100.0 26 PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of lactate/malate dehydrogenase from2 brucella melitensis in complex with adp 19 c3fi9B_ 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from porphyromonas2 gingivalis 20 c1u4sA_ 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: plasmodium falciparum lactate dehydrogenase complexed with 2,6-2 naphthalenedisulphonic acid 21 c1b8vA_ not modelled 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: malate dehydrogenase from aquaspirillum arcticum 22 c3pqeD_ not modelled 100.0 26 PDB header:oxidoreductase Chain: D: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of l-lactate dehydrogenase from bacillus subtilis2 with h171c mutation 23 c3p7mC_ not modelled 100.0 29 PDB header:oxidoreductase Chain: C: PDB Molecule:malate dehydrogenase; PDBTitle: structure of putative lactate dehydrogenase from francisella2 tularensis subsp. tularensis schu s4 24 c7mdhA_ not modelled 100.0 24 PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form 25 c1hygA_ not modelled 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate/malate dehydrogenase; PDBTitle: crystal structure of mj0490 gene product, the family of2 lactate/malate dehydrogenase 26 c5mdhB_ not modelled 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of ternary complex of porcine cytoplasmic malate2 dehydrogenase alpha-ketomalonate and tnad at 2.4 angstroms resolution 27 c2v65A_ not modelled 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase a chain; PDBTitle: apo ldh from the psychrophile c. gunnari 28 c2hjrK_ not modelled 100.0 31 PDB header:oxidoreductase Chain: K: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of cryptosporidium parvum malate2 dehydrogenase 29 c2fnzA_ not modelled 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:lactate dehydrogenase; PDBTitle: crystal structure of the lactate dehydrogenase from cryptosporidium2 parvum complexed with cofactor (b-nicotinamide adenine dinucleotide)3 and inhibitor (oxamic acid) 30 c1lldA_ not modelled 100.0 25 PDB header:oxidoreductase(choh (d)-nad (a)) Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: molecular basis of allosteric activation of bacterial l-lactate2 dehydrogenase 31 c8ldhA_ not modelled 100.0 22 PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:m4 apo-lactate dehydrogenase; PDBTitle: refined crystal structure of dogfish m4 apo-lactate2 dehydrogenase 32 c2v6bB_ not modelled 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form) 33 c3d0oA_ not modelled 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase 1; PDBTitle: crystal structure of lactate dehydrogenase from2 staphylococcus aureus 34 c3tl2A_ not modelled 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of bacillus anthracis str. ames malate dehydrogenase2 in closed conformation. 35 c1a5zA_ not modelled 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: lactate dehydrogenase from thermotoga maritima (tmldh) 36 c1wziA_ not modelled 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for alteration of cofactor specificity of2 malate dehydrogenase from thermus flavus 37 c2ldxA_ not modelled 100.0 25 PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-lactate dehydrogenase; PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4 38 c1llcA_ not modelled 100.0 23 PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: structure determination of the allosteric l-lactate dehydrogenase from2 lactobacillus casei at 3.0 angstroms resolution 39 c2hlpB_ not modelled 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the e267r mutant of a halophilic2 malate dehydrogenase in the apo form 40 d2cmda2 not modelled 100.0 100 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 41 d1mlda2 not modelled 100.0 65 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 42 d1ez4a2 not modelled 99.9 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 43 d1pzga2 not modelled 99.9 30 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 44 d1oc4a2 not modelled 99.9 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 45 d1i0za2 not modelled 99.9 23 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 46 d9ldta2 not modelled 99.9 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 47 d1o6za2 not modelled 99.9 23 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 48 d1llda2 not modelled 99.9 20 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 49 d1i10a2 not modelled 99.9 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 50 d1guza2 not modelled 99.9 26 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 51 d1hyha2 not modelled 99.9 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 52 d1uxja2 not modelled 99.9 28 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 53 d1ldna2 not modelled 99.9 24 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 54 d1gv0a2 not modelled 99.9 26 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 55 d1a5za2 not modelled 99.9 30 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 56 d1t2da2 not modelled 99.9 20 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 57 d1ldma2 not modelled 99.9 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 58 d1y6ja2 not modelled 99.9 23 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 59 d2ldxa2 not modelled 99.9 24 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 60 d1ojua2 not modelled 99.9 16 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 61 d1llca2 not modelled 99.9 27 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 62 d5mdha2 not modelled 99.9 21 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 63 d1civa2 not modelled 99.9 23 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 64 d1y7ta2 not modelled 99.9 22 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 65 d7mdha2 not modelled 99.9 23 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 66 d1hyea2 not modelled 99.8 23 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 67 d1b8pa2 not modelled 99.8 19 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 68 c1s6yA_ not modelled 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: 2.3a crystal structure of phospho-beta-glucosidase 69 c1up6F_ not modelled 99.8 17 PDB header:hydrolase Chain: F: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: structure of the 6-phospho-beta glucosidase from thermotoga2 maritima at 2.55 angstrom resolution in the tetragonal form3 with manganese, nad+ and glucose-6-phosphate 70 c3fefB_ not modelled 99.7 21 PDB header:hydrolase Chain: B: PDB Molecule:putative glucosidase lpld; PDBTitle: crystal structure of putative glucosidase lpld from2 bacillus subtilis 71 c1u8xX_ not modelled 99.4 13 PDB header:hydrolase Chain: X: PDB Molecule:maltose-6'-phosphate glucosidase; PDBTitle: crystal structure of glva from bacillus subtilis, a metal-requiring,2 nad-dependent 6-phospho-alpha-glucosidase 72 c1obbB_ not modelled 98.9 22 PDB header:hydrolase Chain: B: PDB Molecule:alpha-glucosidase; PDBTitle: alpha-glucosidase a, agla, from thermotoga maritima in2 complex with maltose and nad+ 73 c1vjtA_ not modelled 97.4 25 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution 74 d1f7ua3 not modelled 42.7 22 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Family:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 75 c2l9bB_ not modelled 27.6 25 PDB header:transcription Chain: B: PDB Molecule:mrna 3'-end-processing protein rna14; PDBTitle: heterodimer between rna14p monkeytail domain and rna15p hinge domain2 of the yeast cf ia complex 76 c3bd1B_ not modelled 23.3 11 PDB header:transcription Chain: B: PDB Molecule:cro protein; PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1 77 c2bsjB_ not modelled 19.7 26 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein syct; PDBTitle: native crystal structure of the type iii secretion2 chaperone syct from yersinia enterocolitica 78 c2kpjA_ not modelled 18.2 9 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 79 c3cecA_ not modelled 17.4 12 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 80 d1llib_ not modelled 16.1 9 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 81 c3omtA_ not modelled 15.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. 82 d3pmga3 not modelled 14.5 17 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 83 d1b0na2 not modelled 14.3 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 84 c1b0nA_ not modelled 14.2 11 PDB header:transcription regulator Chain: A: PDB Molecule:protein (sinr protein); PDBTitle: sinr protein/sini protein complex 85 c3t5sA_ not modelled 13.8 11 PDB header:immune system Chain: A: PDB Molecule:macrophage migration inhibitory factor; PDBTitle: structure of macrophage migration inhibitory factor from giardia2 lamblia 86 d2b5aa1 not modelled 13.6 8 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 87 c3op9A_ not modelled 13.4 23 PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua 88 c3trbA_ not modelled 13.0 13 PDB header:dna binding protein Chain: A: PDB Molecule:virulence-associated protein i; PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii 89 d1utxa_ not modelled 12.9 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 90 c2cgkB_ not modelled 12.7 20 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 91 d2icta1 not modelled 12.3 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 92 c3clcC_ not modelled 11.8 10 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 93 d1rzsa_ not modelled 11.2 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 94 d2gx8a1 not modelled 11.1 27 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 95 c2vi6F_ not modelled 11.0 5 PDB header:transcription Chain: F: PDB Molecule:homeobox protein nanog; PDBTitle: crystal structure of the nanog homeodomain 96 d1wh9a_ not modelled 10.8 21 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 97 c3b7hA_ not modelled 10.7 18 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 98 c1sb7A_ not modelled 10.1 13 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase d; PDBTitle: crystal structure of the e.coli pseudouridine synthase trud 99 c2gx8B_ not modelled 10.0 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0