Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	K	I	V	L	A	L	G	G	N	A	L	G	D	D	L	A	G	Q	M	K	A	V	K	I	T	S	Q	A	I	V	D	L	I	A	Q	G	H	E	V	I	V	T	H	G	N	G	P	Q	V	G	M	I	N	Q	A	F	E
Secondary structure
SS confidence
Disorder		?	?	?													?	?	?																																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	A	A	K	T	E	A	H	S	P	M	L	P	M	S	V	C	V	A	L	S	Q	G	Y	I	G	Y	D	L	Q	N	A	L	R	E	E	L	L	S	R	G	I	N	K	P	V	A	T	L	V	T	Q	V	E	V	D	A	N	D	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	F	L	N	P	T	K	P	I	G	S	F	F	T	E	Q	E	A	E	Q	L	T	K	Q	G	Y	T	L	K	E	D	A	G	R	G	Y	R	R	V	V	A	S	P	K	P	V	D	I	I	E	K	E	T	V	K	A	L	V	D	A
Secondary structure
SS confidence
Disorder		?	?	?																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	Q	V	V	I	T	V	G	G	G	G	I	P	V	I	R	E	G	N	H	L	R	G	A	S	A	V	I	D	K	D	W	A	S	A	R	L	A	E	M	I	D	A	D	M	L	I	I	L	T	A	V	E	K	V	A	I	N	F	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	E	N	E	Q	W	L	D	R	L	S	L	S	D	A	E	R	F	I	E	E	G	H	F	A	K	G	S	M	L	P	K	V	E	A	A	A	S	F	A	R	S	R	A	G	R	E	A	L	I	T	V	L	S	K	A	K	E	G	I
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310
Sequence		E	G	K	T	G	T	V	I	C	Q
Secondary structure
SS confidence
Disorder										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1e19 chain A Region: 2 - 309 Aligned: 306 Modelled: 308 Confidence: 100.0% Identity: 48% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 2e9y chain A Region: 2 - 309 Aligned: 304 Modelled: 305 Confidence: 100.0% Identity: 42% PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 Phyre2 PDB 1b7b chain A Region: 2 - 308 Aligned: 303 Modelled: 307 Confidence: 100.0% Identity: 51% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 3kzf chain C Region: 2 - 310 Aligned: 279 Modelled: 284 Confidence: 100.0% Identity: 44% PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase Phyre2 PDB 2rd5 chain A Region: 2 - 310 Aligned: 259 Modelled: 274 Confidence: 100.0% Identity: 20% PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana Phyre2 PDB 2ap9 chain A domain 1 Region: 2 - 310 Aligned: 262 Modelled: 279 Confidence: 100.0% Identity: 19% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 2buf chain A domain 1 Region: 2 - 310 Aligned: 259 Modelled: 272 Confidence: 100.0% Identity: 22% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 1gs5 chain A Region: 1 - 309 Aligned: 253 Modelled: 272 Confidence: 100.0% Identity: 22% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 2r98 chain A Region: 2 - 310 Aligned: 249 Modelled: 271 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae Phyre2 PDB 2v5h chain B Region: 2 - 310 Aligned: 258 Modelled: 273 Confidence: 100.0% Identity: 18% PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 Phyre2 PDB 2bty chain A domain 1 Region: 2 - 310 Aligned: 255 Modelled: 274 Confidence: 100.0% Identity: 26% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 3l86 chain A Region: 1 - 292 Aligned: 235 Modelled: 256 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 Phyre2 PDB 2j5t chain F Region: 2 - 309 Aligned: 237 Modelled: 257 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate Phyre2 PDB 2w21 chain A Region: 2 - 309 Aligned: 238 Modelled: 252 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. Phyre2 PDB 2hmf chain A domain 1 Region: 4 - 310 Aligned: 286 Modelled: 307 Confidence: 100.0% Identity: 14% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2egx chain A Region: 5 - 308 Aligned: 236 Modelled: 263 Confidence: 100.0% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus Phyre2 PDB 2bne chain A domain 1 Region: 1 - 310 Aligned: 227 Modelled: 236 Confidence: 100.0% Identity: 22% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1ybd chain A domain 1 Region: 3 - 308 Aligned: 224 Modelled: 229 Confidence: 100.0% Identity: 18% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 3c1n chain A Region: 4 - 310 Aligned: 285 Modelled: 307 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine Phyre2 PDB 2ako chain A domain 1 Region: 3 - 308 Aligned: 234 Modelled: 248 Confidence: 100.0% Identity: 18% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 1 d1e19a_ 2 c2e9yA_ 3 d1b7ba_ 4 c3kzfC_ 5 c2rd5A_ 6 d2ap9a1 7 d2bufa1 8 d1gs5a_ 9 c2r98A_ 10 c2v5hB_ 11 d2btya1 12 c3l86A_ 13 c2j5tF_ 14 c2w21A_ 15 d2hmfa1 16 c2egxA_ 17 d2bnea1 18 d1ybda1 19 c3c1nA_ 20 d2akoa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1e19a_ 100.0 48 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 2 c2e9yA_ 100.0 42 PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 3 d1b7ba_ 100.0 51 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 4 c3kzfC_ 100.0 44 PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase 5 c2rd5A_ 100.0 20 PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 6 d2ap9a1 100.0 19 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 7 d2bufa1 100.0 22 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 8 d1gs5a_ 100.0 22 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 9 c2r98A_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae 10 c2v5hB_ 100.0 18 PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 11 d2btya1 100.0 26 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 12 c3l86A_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 13 c2j5tF_ 100.0 19 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 14 c2w21A_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. 15 d2hmfa1 100.0 14 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 16 c2egxA_ 100.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus 17 d2bnea1 100.0 22 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 18 d1ybda1 100.0 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 19 c3c1nA_ 100.0 14 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 20 d2akoa1 100.0 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 21 d2cdqa1 not modelled 100.0 10 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 22 c3l76B_ not modelled 100.0 16 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 23 d1z9da1 not modelled 100.0 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 24 c3ek5A_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium 25 c2jjxC_ not modelled 100.0 19 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: the crystal structure of ump kinase from bacillus anthracis2 (ba1797) 26 c3ll5C_ not modelled 100.0 21 PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyl kinase related protein; PDBTitle: crystal structure of t. acidophilum isopentenyl phosphate kinase2 product complex 27 c3ll9A_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: x-ray structures of isopentenyl phosphate kinase 28 d2a1fa1 not modelled 100.0 22 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 29 d2j0wa1 not modelled 100.0 15 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 30 c3nwyB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis 31 d2ij9a1 not modelled 100.0 27 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 32 c3k4yB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp 33 c2cdqB_ not modelled 100.0 11 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 34 d2brxa1 not modelled 100.0 23 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 35 c3ab4K_ not modelled 100.0 21 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 36 c3d40A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:foma protein; PDBTitle: crystal structure of fosfomycin resistance kinase foma from2 streptomyces wedmorensis complexed with diphosphate 37 c2j0wA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 38 c2ogxB_ not modelled 100.0 20 PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 39 c2va1A_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum 40 c2ogxA_ not modelled 100.0 17 PDB header:metal binding protein Chain: A: PDB Molecule:molybdenum storage protein subunit alpha; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 41 c2j4kC_ not modelled 100.0 22 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of uridylate kinase from sulfolobus2 solfataricus in complex with ump to 2.2 angstrom3 resolution 42 d2zdra2 not modelled 85.2 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 43 c1xuzA_ not modelled 63.0 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 44 d2obba1 not modelled 61.7 10 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 45 c3bq9A_ not modelled 59.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 46 d1iowa1 not modelled 49.9 20 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 47 c2q4dB_ not modelled 45.3 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 48 c3mn1B_ not modelled 43.0 21 PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a 49 c4a1aI_ not modelled 41.1 24 PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l13a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 50 d1weka_ not modelled 40.9 19 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 51 d1ydha_ not modelled 38.4 14 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 52 c2dlnA_ not modelled 36.9 20 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 53 d2q4oa1 not modelled 36.4 10 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 54 c2q4oA_ not modelled 36.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210 55 d1xpja_ not modelled 33.2 13 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 56 d1vlia2 not modelled 30.9 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 57 d2nx2a1 not modelled 29.0 25 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:YpsA-like 58 d1t35a_ not modelled 23.7 17 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 59 d1weha_ not modelled 21.9 6 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 60 d1z6za1 not modelled 20.7 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 61 c1vliA_ not modelled 19.4 19 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 62 c3fzqA_ not modelled 19.0 19 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative haloacid dehalogenase-like hydrolase2 (yp_001086940.1) from clostridium difficile 630 at 2.10 a resolution 63 c3gk0H_ not modelled 18.3 33 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 64 c3g8rA_ not modelled 18.2 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 65 d2b0ja2 not modelled 16.9 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 66 c3izcK_ not modelled 16.8 18 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 67 c1x3lA_ not modelled 16.3 11 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph0495; PDBTitle: crystal structure of the ph0495 protein from pyrococccus horikoshii2 ot3 68 c3ewiB_ not modelled 15.8 8 PDB header:transferase Chain: B: PDB Molecule:n-acylneuraminate cytidylyltransferase; PDBTitle: structural analysis of the c-terminal domain of murine cmp-2 sialic acid synthetase 69 c3e8mD_ not modelled 15.0 22 PDB header:transferase Chain: D: PDB Molecule:acylneuraminate cytidylyltransferase; PDBTitle: structure-function analysis of 2-keto-3-deoxy-d-glycero-d-galacto-2 nononate-9-phosphate (kdn) phosphatase defines a new clad within the3 type c0 had subfamily 70 c3r4cA_ not modelled 14.8 20 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like hydrolase; PDBTitle: divergence of structure and function among phosphatases of the2 haloalkanoate (had) enzyme superfamily: analysis of bt1666 from3 bacteroides thetaiotaomicron 71 d1m5wa_ not modelled 14.4 30 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 72 c3o6cA_ not modelled 14.3 15 PDB header:transferase Chain: A: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: pyridoxal phosphate biosynthetic protein pdxj from campylobacter2 jejuni 73 d2bdua1 not modelled 14.2 11 Fold:HAD-like Superfamily:HAD-like Family:Pyrimidine 5'-nucleotidase (UMPH-1) 74 c3lqkA_ not modelled 13.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c 75 c3nbuC_ not modelled 13.4 11 PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase 76 c1xrsB_ not modelled 13.3 15 PDB header:isomerase Chain: B: PDB Molecule:d-lysine 5,6-aminomutase beta subunit; PDBTitle: crystal structure of lysine 5,6-aminomutase in complex with plp,2 cobalamin, and 5'-deoxyadenosine 77 d1gzda_ not modelled 13.2 11 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 78 c2pr7A_ not modelled 12.9 8 PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family; PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution 79 c3f46A_ not modelled 12.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methenyltetrahydromethanopterin hydrogenase; PDBTitle: the crystal structure of c176a mutated [fe]-hydrogenase (hmd)2 holoenzyme from methanocaldococcus jannaschii 80 c3mmzA_ not modelled 12.9 11 PDB header:hydrolase Chain: A: PDB Molecule:putative had family hydrolase; PDBTitle: crystal structure of putative had family hydrolase from streptomyces2 avermitilis ma-4680 81 d1k1ea_ not modelled 12.8 14 Fold:HAD-like Superfamily:HAD-like Family:Probable phosphatase YrbI 82 c3mcuF_ not modelled 12.4 24 PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. 83 d1rkqa_ not modelled 12.4 28 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 84 d1g5qa_ not modelled 12.3 19 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 85 c3ujhB_ not modelled 12.0 16 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii 86 c3dnpA_ not modelled 11.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stress response protein yhax; PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis 87 d1xrsb1 not modelled 11.6 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 88 c1xviA_ not modelled 11.4 11 PDB header:hydrolase Chain: A: PDB Molecule:putative mannosyl-3-phosphoglycerate phosphatase; PDBTitle: crystal structure of yedp, phosphatase-like domain protein2 from escherichia coli k12 89 d1xvia_ not modelled 11.4 11 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 90 d1iata_ not modelled 11.2 11 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 91 c3pr3B_ not modelled 11.1 22 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate 92 c3bsuF_ not modelled 10.9 10 PDB header:hydrolase/rna/dna Chain: F: PDB Molecule:ribonuclease h1; PDBTitle: hybrid-binding domain of human rnase h1 in complex with 12-2 mer rna/dna 93 c2wu8A_ not modelled 10.9 9 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv 94 d1xkla_ not modelled 10.8 25 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hydroxynitrile lyase-like 95 c3iz5K_ not modelled 10.5 24 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l13a (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 96 d1u0fa_ not modelled 10.0 13 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 97 c3ljkA_ not modelled 9.5 9 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 98 c2o2cB_ not modelled 9.4 13 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site 99 c3iabB_ not modelled 9.4 18 PDB header:hydrolase/rna Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop7; PDBTitle: crystal structure of rnase p /rnase mrp proteins pop6, pop72 in a complex with the p3 domain of rnase mrp rna

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0