PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3k4yB_

Fold library id	PDB Header	Molecule	Title
c3k4yB_	PDB header: transferase	Chain: B: PDB Molecule: isopentenyl phosphate kinase;	PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp

Links to external resources
Added to library: Sat Aug 28 23:57:20 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M L T I L K L G G S I L S D K N V P Y S I K W D N L E R I A M E I K N A L D Y Y K N Q N K E I K L I L V H G G G A F G H P V A K K Y L K I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S
T T S T T
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D G K K I F I N M E K G F W E I Q R A M R R F N N I I I D T L Q S Y D I P A V S I Q P S S F V V F G D K L I F D T S A I K E M L K R N L V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T
G G G T
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V I H G D I V I D D K N G Y R I I S G D D I V P Y L A N E L K A D L I L Y A T D V D G V L I D N K P I K R I D K N N I Y K I L N Y L G M K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T
S S S S S S T T
S
S S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . .

Sequence K I E M I R K N K C R G F V F N G N K A N N I Y K A L L G E V E G T E I D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
S S S T T T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	L	T	I	L	K	L	G	G	S	I	L	S	D	K	N	V	P	Y	S	I	K	W	D	N	L	E	R	I	A	M	E	I	K	N	A	L	D	Y	Y	K	N	Q	N	K	E	I	K	L	I	L	V	H	G	G	G	A	F	G	H	P	V	A	K	K	Y	L	K	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T	S	S		T	T	S	T	T																								T	T																					T	T				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	G	K	K	I	F	I	N	M	E	K	G	F	W	E	I	Q	R	A	M	R	R	F	N	N	I	I	I	D	T	L	Q	S	Y	D	I	P	A	V	S	I	Q	P	S	S	F	V	V	F	G	D	K	L	I	F	D	T	S	A	I	K	E	M	L	K	R	N	L	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S																															T	T								G	G	G	T					S	S														T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	I	H	G	D	I	V	I	D	D	K	N	G	Y	R	I	I	S	G	D	D	I	V	P	Y	L	A	N	E	L	K	A	D	L	I	L	Y	A	T	D	V	D	G	V	L	I	D	N	K	P	I	K	R	I	D	K	N	N	I	Y	K	I	L	N	Y	L	G	M	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T																			T		S							S	S	S	S	S			T	T				S				S	S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Sequence	K	I	E	M	I	R	K	N	K	C	R	G	F	V	F	N	G	N	K	A	N	N	I	Y	K	A	L	L	G	E	V	E	G	T	E	I	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T	T								S	S	S	T	T							T	T				S