PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ll5C_

Fold library id	PDB Header	Molecule	Title
c3ll5C_	PDB header: transferase	Chain: C: PDB Molecule: gamma-glutamyl kinase related protein;	PDBTitle: crystal structure of t. acidophilum isopentenyl phosphate kinase2 product complex

Links to external resources
Added to library: Sat Aug 28 21:16:34 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D P F T X X I L K I G G S V I T D K S A Y R T A R T Y A I R S I V K V L S G I E D L V C V V H G G G S F G H I K A X E F G L P G P K N P R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B
S
S S
S B
T T
T T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S I G Y S I V H R D X E N L D L X V I D A X I E X G X R P I S V P I S A L R Y D G R F D Y T P L I R Y I D A G F V P V S Y G D V Y I K D E H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S
B S S S B
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S Y G I Y S G D D I X A D X A E L L K P D V A V F L T D V D G I Y S K D P K R N P D A V L L R D I D T N G I G K K F E S X V K X K S S V K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S
B S S
T T T
T T
B
G G G T
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . .

Sequence G V Y L I N G N H P E R I G D I G K E S F I G T V I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S G G G G G G T T S S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	P	F	T	X	X	I	L	K	I	G	G	S	V	I	T	D	K	S	A	Y	R	T	A	R	T	Y	A	I	R	S	I	V	K	V	L	S	G	I	E	D	L	V	C	V	V	H	G	G	G	S	F	G	H	I	K	A	X	E	F	G	L	P	G	P	K	N	P	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T													B		S		S	S		S	B													T	T		T	T																			T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	I	G	Y	S	I	V	H	R	D	X	E	N	L	D	L	X	V	I	D	A	X	I	E	X	G	X	R	P	I	S	V	P	I	S	A	L	R	Y	D	G	R	F	D	Y	T	P	L	I	R	Y	I	D	A	G	F	V	P	V	S	Y	G	D	V	Y	I	K	D	E	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									T	T								G	G	G	S		B	S	S	S	B											T	T														T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	Y	G	I	Y	S	G	D	D	I	X	A	D	X	A	E	L	L	K	P	D	V	A	V	F	L	T	D	V	D	G	I	Y	S	K	D	P	K	R	N	P	D	A	V	L	L	R	D	I	D	T	N	G	I	G	K	K	F	E	S	X	V	K	X	K	S	S	V	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S							S	S	S	S		B	S	S		T	T	T		T	T			B																			G	G	G	T		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence	G	V	Y	L	I	N	G	N	H	P	E	R	I	G	D	I	G	K	E	S	F	I	G	T	V	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S	G	G	G	G	G	G	T	T	S	S	S			S