PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ek5A_

Fold library id	PDB Header	Molecule	Title
c3ek5A_	PDB header: transferase	Chain: A: PDB Molecule: uridylate kinase;	PDBTitle: unique gtp-binding pocket and allostery of ump kinase from2 a gram-negative phytopathogen bacterium

Links to external resources
Added to library: Tue Mar 16 13:10:07 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N A M S E L S Y R R I L L K L S G E A L M G D G D Y G I D P K V I N R L A H E V I E A Q Q A G A Q V A L V I G G G N I F R G A G L A A S G M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
S
G G G G G T T S S S S
T T
S T T T S
S T T T S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D R V T G D H M G M L A T V I N A L A M Q D A L E K L G A K V R V M S A I K I N D V C E D F I R R R A I R H L E K G R I A I F A A G T G N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T T T S
T T
S T T S S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F F T T D S G A A L R A I E I G A D L L L K A T K V D G V Y D K D P K K H S D A V R Y D S L T Y D E V I M Q G L E V M D T A A F A L A R D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
S
S S S S
B S S
T T T
T T
B
S
T T
S S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 .

Sequence D L P L R I F G M S E P G V L L R I L H G A Q I G T L V Q G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	A	M	S	E	L	S	Y	R	R	I	L	L	K	L	S	G	E	A	L	M	G	D	G	D	Y	G	I	D	P	K	V	I	N	R	L	A	H	E	V	I	E	A	Q	Q	A	G	A	Q	V	A	L	V	I	G	G	G	N	I	F	R	G	A	G	L	A	A	S	G	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G		S		S								G	G	G	G	G	T	T	S	S	S	S																			T	T									S	T	T	T	S		S	T	T	T	S		T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	R	V	T	G	D	H	M	G	M	L	A	T	V	I	N	A	L	A	M	Q	D	A	L	E	K	L	G	A	K	V	R	V	M	S	A	I	K	I	N	D	V	C	E	D	F	I	R	R	R	A	I	R	H	L	E	K	G	R	I	A	I	F	A	A	G	T	G	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											T	T								S	S			T	T	T	S														T	T							S	T	T	S	S	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	F	T	T	D	S	G	A	A	L	R	A	I	E	I	G	A	D	L	L	L	K	A	T	K	V	D	G	V	Y	D	K	D	P	K	K	H	S	D	A	V	R	Y	D	S	L	T	Y	D	E	V	I	M	Q	G	L	E	V	M	D	T	A	A	F	A	L	A	R	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T															T		S							S	S	S	S		B	S	S		T	T	T		T	T			B		S										T	T			S	S											T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Sequence	D	L	P	L	R	I	F	G	M	S	E	P	G	V	L	L	R	I	L	H	G	A	Q	I	G	T	L	V	Q	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T										S	T	T							T	T				S