PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2va1A_

Fold library id	PDB Header	Molecule	Title
c2va1A_	PDB header: transferase	Chain: A: PDB Molecule: uridylate kinase;	PDBTitle: crystal structure of ump kinase from ureaplasma parvum

Links to external resources
Added to library: Tue Mar 16 13:23:21 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R K Q R I V I K I S G A C L K Q N D S S I I D F I K I N D L A E Q I E K I S K K Y I V S I V L G G G N I W R G S I A K E L D M D R N L A D N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G G
S S T T
S S
T T T S
T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M G M M A T I I N G L A L E N A L N H L N V N T I V L S A I K C D K L V H E S S A N N I K K A I E K E Q V M I F V A G T G F P Y F T T D S C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S
T T T
T T
S T T S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A A I R A A E T E S S I I L M G K N G V D G V Y D S D F Y E H I T F N M A L T Q N L K V M D A T A L A L C Q E N N I N L L V F N I D K P N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
S B
S
B S T
S S
T T
S S S T T

. . . . . . . . . 220 . . . . . .

Sequence I V D V L E K K N K Y T I V S K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	K	Q	R	I	V	I	K	I	S	G	A	C	L	K	Q	N	D	S	S	I	I	D	F	I	K	I	N	D	L	A	E	Q	I	E	K	I	S	K	K	Y	I	V	S	I	V	L	G	G	G	N	I	W	R	G	S	I	A	K	E	L	D	M	D	R	N	L	A	D	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S								G	G	G	G		S	S	T	T		S	S																T	T	T	S									T	T	T									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	G	M	M	A	T	I	I	N	G	L	A	L	E	N	A	L	N	H	L	N	V	N	T	I	V	L	S	A	I	K	C	D	K	L	V	H	E	S	S	A	N	N	I	K	K	A	I	E	K	E	Q	V	M	I	F	V	A	G	T	G	F	P	Y	F	T	T	D	S	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T	T								S	S			T	T	T															T	T							S	T	T	S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	A	I	R	A	A	E	T	E	S	S	I	I	L	M	G	K	N	G	V	D	G	V	Y	D	S	D	F	Y	E	H	I	T	F	N	M	A	L	T	Q	N	L	K	V	M	D	A	T	A	L	A	L	C	Q	E	N	N	I	N	L	L	V	F	N	I	D	K	P	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T		S							S	S			S	B		S				B	S											T			S	S											T	T								S	S	S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	I	V	D	V	L	E	K	K	N	K	Y	T	I	V	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		S