PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3iz5K_

Fold library id	PDB Header	Molecule	Title
c3iz5K_	PDB header: ribosome	Chain: K: PDB Molecule: 60s ribosomal protein l13a (l13p);	PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Links to external resources
Added to library: Sat Dec 11 13:45:12 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M V S G S G V C A K R V V V D A R H H M L G R L A S I V A K E L L N G Q R V V V V R C E E I C M S G G L V R Q K M K Y L R F L R K R M N T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
T T B B T T
G G G
S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P S H G P I H F R A P A K I L W R T I R G M I P H K T A R G E A A L A R L K A Y E G V P P P Y D R T K R M V I P D A L K V L R L Q P G H R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S
S S
T T S T T S S
T T
S
B
T T T B
B T T B
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . .

Sequence C L L G Q L S K E V G W N Y A D T I R E L E E K R K E K A K V S Y D R R K Q L A K L R V K A E K A A E E K L G T Q L E I L A P I K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T
T T S
S S T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	V	S	G	S	G	V	C	A	K	R	V	V	V	D	A	R	H	H	M	L	G	R	L	A	S	I	V	A	K	E	L	L	N	G	Q	R	V	V	V	V	R	C	E	E	I	C	M	S	G	G	L	V	R	Q	K	M	K	Y	L	R	F	L	R	K	R	M	N	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S			S	S							T	T	B	B														T	T								G	G	G					S																T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	S	H	G	P	I	H	F	R	A	P	A	K	I	L	W	R	T	I	R	G	M	I	P	H	K	T	A	R	G	E	A	A	L	A	R	L	K	A	Y	E	G	V	P	P	P	Y	D	R	T	K	R	M	V	I	P	D	A	L	K	V	L	R	L	Q	P	G	H	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S		S					S													S		T	T	S								T	T					S	S			T	T			S			B			T	T	T	B		B	T	T	B		S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence	C	L	L	G	Q	L	S	K	E	V	G	W	N	Y	A	D	T	I	R	E	L	E	E	K	R	K	E	K	A	K	V	S	Y	D	R	R	K	Q	L	A	K	L	R	V	K	A	E	K	A	A	E	E	K	L	G	T	Q	L	E	I	L	A	P	I	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G	T		T	T																																							S					S	S	T	T					T