Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V
Secondary structure
SS confidence
Disorder		?	?	?																														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V
Secondary structure
SS confidence
Disorder																				?	?																																	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H
Secondary structure
SS confidence
Disorder		?	?	?	?																																								?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G
Secondary structure
SS confidence
Disorder																																													?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Sequence		V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y	A	V	G	Q	G	P	M	W	V	V	V	N	A	H
Secondary structure
SS confidence
Disorder																	?														?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ri6 chain A Region: 1 - 331 Aligned: 331 Modelled: 331 Confidence: 100.0% Identity: 99% Fold: 7-bladed beta-propeller Superfamily: Putative isomerase YbhE Family: Putative isomerase YbhE Phyre2 PDB 3hfq chain B Region: 1 - 327 Aligned: 324 Modelled: 326 Confidence: 100.0% Identity: 21% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. Phyre2 PDB 1jof chain A Region: 3 - 328 Aligned: 322 Modelled: 322 Confidence: 100.0% Identity: 13% Fold: 7-bladed beta-propeller Superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme Family: 3-carboxy-cis,cis-mucoante lactonizing enzyme Phyre2 PDB 3fgb chain B Region: 4 - 328 Aligned: 319 Modelled: 323 Confidence: 100.0% Identity: 27% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn; PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b. Phyre2 PDB 1l0q chain A domain 2 Region: 5 - 325 Aligned: 286 Modelled: 300 Confidence: 100.0% Identity: 19% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: YVTN repeat Phyre2 PDB 3u4y chain A Region: 5 - 330 Aligned: 306 Modelled: 325 Confidence: 99.9% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771. Phyre2 PDB 3bws chain A Region: 2 - 306 Aligned: 276 Modelled: 294 Confidence: 99.9% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 Phyre2 PDB 3dm0 chain A Region: 5 - 304 Aligned: 274 Modelled: 281 Confidence: 99.9% Identity: 12% PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Phyre2 PDB 1nno chain A Region: 2 - 326 Aligned: 314 Modelled: 325 Confidence: 99.9% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa Phyre2 PDB 2mad chain H Region: 3 - 328 Aligned: 308 Modelled: 326 Confidence: 99.9% Identity: 11% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Methylamine dehydrogenase, H-chain Phyre2 PDB 1gq1 chain B Region: 5 - 326 Aligned: 306 Modelled: 317 Confidence: 99.9% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form Phyre2 PDB 1nir chain A domain 2 Region: 2 - 326 Aligned: 314 Modelled: 324 Confidence: 99.9% Identity: 13% Fold: 8-bladed beta-propeller Superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Phyre2 PDB 1qks chain A domain 2 Region: 2 - 326 Aligned: 309 Modelled: 320 Confidence: 99.9% Identity: 12% Fold: 8-bladed beta-propeller Superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Phyre2 PDB 2i0t chain B Region: 3 - 330 Aligned: 312 Modelled: 327 Confidence: 99.9% Identity: 12% PDB header:oxidoreductase Chain: B: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase Phyre2 PDB 1pby chain B Region: 3 - 323 Aligned: 303 Modelled: 315 Confidence: 99.9% Identity: 11% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Quinohemoprotein amine dehydrogenase B chain Phyre2 PDB 1l0q chain C Region: 3 - 323 Aligned: 286 Modelled: 300 Confidence: 99.9% Identity: 19% PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein Phyre2 PDB 2h47 chain F Region: 3 - 330 Aligned: 312 Modelled: 322 Confidence: 99.9% Identity: 12% PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) Phyre2 PDB 1jmx chain B Region: 3 - 327 Aligned: 313 Modelled: 319 Confidence: 99.9% Identity: 11% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Quinohemoprotein amine dehydrogenase B chain Phyre2 PDB 2j57 chain J Region: 3 - 328 Aligned: 313 Modelled: 326 Confidence: 99.9% Identity: 14% PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin. Phyre2 PDB 3c75 chain J Region: 3 - 327 Aligned: 307 Modelled: 325 Confidence: 99.9% Identity: 14% PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin Phyre2 1 d1ri6a_ 2 c3hfqB_ 3 d1jofa_ 4 c3fgbB_ 5 d1l0qa2 6 c3u4yA_ 7 c3bwsA_ 8 c3dm0A_ 9 c1nnoA_ 10 d2madh_ 11 c1gq1B_ 12 d1nira2 13 d1qksa2 14 c2i0tB_ 15 d1pbyb_ 16 c1l0qC_ 17 c2h47F_ 18 d1jmxb_ 19 c2j57J_ 20 c3c75J_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ri6a_ 100.0 99 Fold:7-bladed beta-propeller Superfamily:Putative isomerase YbhE Family:Putative isomerase YbhE 2 c3hfqB_ 100.0 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. 3 d1jofa_ 100.0 13 Fold:7-bladed beta-propeller Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme Family:3-carboxy-cis,cis-mucoante lactonizing enzyme 4 c3fgbB_ 100.0 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn; PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b. 5 d1l0qa2 100.0 19 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:YVTN repeat 6 c3u4yA_ 99.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771. 7 c3bwsA_ 99.9 17 PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 8 c3dm0A_ 99.9 12 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 9 c1nnoA_ 99.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa 10 d2madh_ 99.9 11 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 11 c1gq1B_ 99.9 14 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form 12 d1nira2 99.9 13 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 13 d1qksa2 99.9 12 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 14 c2i0tB_ 99.9 12 PDB header:oxidoreductase Chain: B: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase 15 d1pbyb_ 99.9 11 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 16 c1l0qC_ 99.9 19 PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein 17 c2h47F_ 99.9 12 PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 18 d1jmxb_ 99.9 11 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 19 c2j57J_ 99.9 14 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin. 20 c3c75J_ 99.9 14 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 21 c3sbrF_ not modelled 99.9 13 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate 22 d1qnia2 not modelled 99.9 14 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 23 d1fwxa2 not modelled 99.9 12 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 24 c3jroA_ not modelled 99.9 11 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 25 c1qniE_ not modelled 99.9 13 PDB header:oxidoreductase Chain: E: PDB Molecule:nitrous-oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution 26 c2pm9A_ not modelled 99.9 10 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat 27 d2bbkh_ not modelled 99.8 13 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 28 c3dsmA_ not modelled 99.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bacuni_02894; PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d. 29 c1fwxB_ not modelled 99.8 12 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans 30 c2w18A_ not modelled 99.8 10 PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 31 c1nr0A_ not modelled 99.8 8 PDB header:structural protein Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1). 32 c3vh0C_ not modelled 99.8 11 PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna 33 d1gxra_ not modelled 99.8 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 34 c3mmyE_ not modelled 99.8 12 PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 35 c2aq5A_ not modelled 99.8 15 PDB header:structural protein Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of murine coronin-1 36 d1yfqa_ not modelled 99.8 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:Cell cycle arrest protein BUB3 37 d1k8kc_ not modelled 99.8 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 38 c3mkqA_ not modelled 99.8 10 PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 39 c3jzhA_ not modelled 99.8 7 PDB header:gene regulation Chain: A: PDB Molecule:polycomb protein eed; PDBTitle: eed-h3k79me3 40 c3i2nA_ not modelled 99.8 12 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 92; PDBTitle: crystal structure of wd40 repeats protein wdr92 41 c3iytG_ not modelled 99.8 15 PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex 42 c2j04B_ not modelled 99.8 13 PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic 43 c3ei3B_ not modelled 99.8 8 PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex 44 c3frxB_ not modelled 99.8 11 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta- PDBTitle: crystal structure of the yeast orthologue of rack1, asc1. 45 c3cfvA_ not modelled 99.8 10 PDB header:histone/chaperone Chain: A: PDB Molecule:histone-binding protein rbbp7; PDBTitle: structural basis of the interaction of rbap46/rbap48 with2 histone h4 46 d1nr0a1 not modelled 99.8 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 47 c4a11B_ not modelled 99.8 10 PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex 48 c1r5mA_ not modelled 99.8 11 PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 49 c1pi6A_ not modelled 99.8 9 PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form 50 c3ei4D_ not modelled 99.7 12 PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex 51 c2xznR_ not modelled 99.7 10 PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 52 c2pm7B_ not modelled 99.7 9 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec13; PDBTitle: crystal structure of yeast sec13/31 edge element of the2 copii vesicular coat, selenomethionine version 53 c3jrpA_ not modelled 99.7 8 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: sec13 with nup145c (aa109-179) insertion blade 54 c2oajA_ not modelled 99.7 10 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae 55 c2qxvA_ not modelled 99.7 11 PDB header:gene regulation Chain: A: PDB Molecule:embryonic ectoderm development; PDBTitle: structural basis of ezh2 recognition by eed 56 c3ow8A_ not modelled 99.7 13 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 61; PDBTitle: crystal structure of the wd repeat-containing protein 61 57 d1nexb2 not modelled 99.7 13 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 58 d1erja_ not modelled 99.7 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 59 d1tbga_ not modelled 99.7 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 60 c2ojhA_ not modelled 99.7 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1656/agr_c_3050; PDBTitle: the structure of putative tolb from agrobacterium tumefaciens 61 c2ovqB_ not modelled 99.7 9 PDB header:transcription/cell cycle Chain: B: PDB Molecule:f-box/wd repeat protein 7; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 62 d1sq9a_ not modelled 99.7 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 63 d2ovrb2 not modelled 99.7 6 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 64 c3dw8B_ not modelled 99.7 7 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2a 55 kda regulatory PDBTitle: structure of a protein phosphatase 2a holoenzyme with b55 subunit 65 c3acpA_ not modelled 99.7 12 PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome 66 c3fm0A_ not modelled 99.7 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein ciao1; PDBTitle: crystal structure of wd40 protein ciao1 67 c2vduB_ not modelled 99.7 7 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(7)-)-methyltransferase- PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex 68 c3greA_ not modelled 99.7 11 PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain 69 c3eg6A_ not modelled 99.7 10 PDB header:protein binding Chain: A: PDB Molecule:wd repeat-containing protein 5; PDBTitle: structure of wdr5 bound to mll1 peptide 70 c2gnqA_ not modelled 99.7 10 PDB header:transcription Chain: A: PDB Molecule:wd-repeat protein 5; PDBTitle: structure of wdr5 71 d1k32a3 not modelled 99.7 7 Fold:7-bladed beta-propeller Superfamily:Tricorn protease domain 2 Family:Tricorn protease domain 2 72 c3iz6a_ not modelled 99.7 14 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 73 c2iwaA_ not modelled 99.6 8 PDB header:transferase Chain: A: PDB Molecule:glutamine cyclotransferase; PDBTitle: unbound glutaminyl cyclotransferase from carica papaya. 74 c2pbiB_ not modelled 99.6 11 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta 5; PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure 75 d1vyhc1 not modelled 99.6 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 76 d2p4oa1 not modelled 99.6 11 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:All0351-like 77 c1nexD_ not modelled 99.6 10 PDB header:ligase, cell cycle Chain: D: PDB Molecule:cdc4 protein; PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 78 c3bg1E_ not modelled 99.6 8 PDB header:protein transport, hydrolase Chain: E: PDB Molecule:protein sec13 homolog; PDBTitle: architecture of a coat for the nuclear pore membrane 79 c1vyhT_ not modelled 99.6 9 PDB header:hydrolase Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib PDBTitle: paf-ah holoenzyme: lis1/alfa2 80 c3lrvA_ not modelled 99.6 14 PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. 81 d1xfda1 not modelled 99.6 7 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 82 d2dg1a1 not modelled 99.6 9 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 83 d1pgua1 not modelled 99.6 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 84 c2w8bB_ not modelled 99.6 12 PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal 85 c3g4hB_ not modelled 99.6 15 PDB header:hydrolase Chain: B: PDB Molecule:regucalcin; PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound) 86 c3dr2A_ not modelled 99.6 16 PDB header:hydrolase Chain: A: PDB Molecule:exported gluconolactonase; PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways 87 c3dwlH_ not modelled 99.6 8 PDB header:structural protein Chain: H: PDB Molecule:actin-related protein 2/3 complex subunit 1; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 88 d2bgra1 not modelled 99.6 11 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 89 c2ivzD_ not modelled 99.6 11 PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain 90 c3odtB_ not modelled 99.6 9 PDB header:nuclear protein Chain: B: PDB Molecule:protein doa1; PDBTitle: crystal structure of wd40 beta propeller domain of doa1 91 d1nr0a2 not modelled 99.5 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 92 d1pjxa_ not modelled 99.5 10 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 93 c2hesX_ not modelled 99.5 9 PDB header:biosynthetic protein Chain: X: PDB Molecule:ydr267cp; PDBTitle: cytosolic iron-sulphur assembly protein- 1 94 c2zkqa_ not modelled 99.5 11 PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 95 d1v04a_ not modelled 99.5 19 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:Serum paraoxonase/arylesterase 1, PON1 96 d2hqsa1 not modelled 99.5 12 Fold:6-bladed beta-propeller Superfamily:TolB, C-terminal domain Family:TolB, C-terminal domain 97 c3eweC_ not modelled 99.5 10 PDB header:protein transport,structural protein Chain: C: PDB Molecule:nucleoporin seh1; PDBTitle: crystal structure of the nup85/seh1 complex 98 c3qqzA_ not modelled 99.5 11 PDB header:metal binding protein Chain: A: PDB Molecule:putative uncharacterized protein yjik; PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073 99 c1p22A_ not modelled 99.5 9 PDB header:signaling protein Chain: A: PDB Molecule:f-box/wd-repeat protein 1a; PDBTitle: structure of a beta-trcp1-skp1-beta-catenin complex:2 destruction motif binding and lysine specificity on the3 scfbeta-trcp1 ubiquitin ligase 100 d1q7fa_ not modelled 99.5 10 Fold:6-bladed beta-propeller Superfamily:NHL repeat Family:NHL repeat 101 c3fhcA_ not modelled 99.5 8 PDB header:transport protein/hydrolase Chain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214 102 c3nolA_ not modelled 99.4 12 PDB header:transferase Chain: A: PDB Molecule:glutamine cyclotransferase; PDBTitle: crystal structure of zymomonas mobilis glutaminyl cyclase (trigonal2 form) 103 c3hrpA_ not modelled 99.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics protein of unknown function2 (np_812590.1) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a3 resolution 104 c3fw0A_ not modelled 99.4 11 PDB header:lyase Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase; PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate) 105 c1k32E_ not modelled 99.4 13 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease 106 c1n6dE_ not modelled 99.4 13 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative 107 c2oitA_ not modelled 99.4 10 PDB header:oncoprotein Chain: A: PDB Molecule:nucleoporin 214kda; PDBTitle: crystal structure of the n-terminal domain of the human2 proto-oncogene nup214/can 108 c3nokB_ not modelled 99.4 9 PDB header:transferase Chain: B: PDB Molecule:glutaminyl cyclase; PDBTitle: crystal structure of myxococcus xanthus glutaminyl cyclase 109 c2g8sB_ not modelled 99.4 11 PDB header:sugar binding protein Chain: B: PDB Molecule:glucose/sorbosone dehydrogenases; PDBTitle: crystal structure of the soluble aldose sugar dehydrogenase2 (asd) from escherichia coli in the apo-form 110 d1orva1 not modelled 99.4 12 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 111 c3mbrX_ not modelled 99.3 13 PDB header:transferase Chain: X: PDB Molecule:glutamine cyclotransferase; PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris 112 c2z2pA_ not modelled 99.3 8 PDB header:lyase/antibiotic Chain: A: PDB Molecule:virginiamycin b lyase; PDBTitle: crystal structure of catalytically inactive h270a virginiamycin b2 lyase from staphylococcus aureus with quinupristin 113 c3pe7A_ not modelled 99.3 10 PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese 114 c3e5zA_ not modelled 99.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 115 d1ospo_ not modelled 99.3 11 Fold:open-sided beta-meander Superfamily:Outer surface protein Family:Outer surface protein 116 c2iwkB_ not modelled 99.3 12 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: inhibitor-bound form of nitrous oxide reductase from2 achromobacter cycloclastes at 1.7 angstrom resolution 117 d1k32a2 not modelled 99.3 11 Fold:6-bladed beta-propeller Superfamily:Tricorn protease N-terminal domain Family:Tricorn protease N-terminal domain 118 c3tc9B_ not modelled 99.3 13 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical hydrolase; PDBTitle: crystal structure of a hypothetical hydrolase (bt_3476) from2 bacteroides thetaiotaomicron vpi-5482 at 2.23 a resolution 119 c2ghsA_ not modelled 99.2 15 PDB header:calcium-binding protein Chain: A: PDB Molecule:agr_c_1268p; PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution 120 d2ghsa1 not modelled 99.2 15 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0