Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP39382
DateThu Jan 5 12:00:14 GMT 2012
Unique Job ID8bca21ec279812dc

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3qqzA_
Top template information
PDB header:metal binding protein
Chain: A: PDB Molecule:putative uncharacterized protein yjik;
PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073
Confidence and coverage
Confidence:100.0% Coverage: 85%
243 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTKSISLSKRISIIVILFAIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNI
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Disorder  ?????????
















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?????????????

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   .........70.........80.........90.........100.........110.........120
Sequence  SSLTWSAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDER
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   .........130.........140.........150.........160.........170.........180
Sequence  DYAIYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV
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?
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   .........190.........200.........210.........220.........230.........240
Sequence  NGLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGE
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Disorder 

????????
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   .........250.........260.........270.........280......
Sequence  MSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQSSH
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Disorder 


???????????


























?????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3qqz chain A

3D model

Region: 40 - 282
Aligned: 243
Modelled: 243
Confidence: 100.0%
Identity: 98%
PDB header:metal binding protein
Chain: A: PDB Molecule:putative uncharacterized protein yjik;
PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073

Phyre2

PDB 3fw0 chain A

3D model

Region: 37 - 285
Aligned: 249
Modelled: 249
Confidence: 99.9%
Identity: 13%
PDB header:lyase
Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase;
PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate)

Phyre2

PDB 3hrp chain A

3D model

Region: 48 - 283
Aligned: 229
Modelled: 236
Confidence: 99.9%
Identity: 10%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of structural genomics protein of unknown function2 (np_812590.1) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a3 resolution

Phyre2

PDB 2ghs chain A

3D model

Region: 61 - 285
Aligned: 209
Modelled: 211
Confidence: 99.9%
Identity: 11%
PDB header:calcium-binding protein
Chain: A: PDB Molecule:agr_c_1268p;
PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution

Phyre2

PDB 2ghs chain A domain 1

3D model

Region: 61 - 285
Aligned: 209
Modelled: 211
Confidence: 99.9%
Identity: 11%
Fold: 6-bladed beta-propeller
Superfamily: Calcium-dependent phosphotriesterase
Family: SGL-like

Phyre2

PDB 2p4o chain A domain 1

3D model

Region: 58 - 285
Aligned: 211
Modelled: 220
Confidence: 99.9%
Identity: 16%
Fold: 6-bladed beta-propeller
Superfamily: Calcium-dependent phosphotriesterase
Family: All0351-like

Phyre2

PDB 3dr2 chain A

3D model

Region: 49 - 285
Aligned: 225
Modelled: 230
Confidence: 99.8%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:exported gluconolactonase;
PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways

Phyre2

PDB 2qc5 chain A

3D model

Region: 38 - 281
Aligned: 231
Modelled: 244
Confidence: 99.8%
Identity: 9%
PDB header:lyase
Chain: A: PDB Molecule:streptogramin b lactonase;
PDBTitle: streptogramin b lyase structure

Phyre2

PDB 2z2p chain A

3D model

Region: 45 - 285
Aligned: 222
Modelled: 232
Confidence: 99.8%
Identity: 11%
PDB header:lyase/antibiotic
Chain: A: PDB Molecule:virginiamycin b lyase;
PDBTitle: crystal structure of catalytically inactive h270a virginiamycin b2 lyase from staphylococcus aureus with quinupristin

Phyre2

PDB 3kya chain A

3D model

Region: 54 - 285
Aligned: 232
Modelled: 232
Confidence: 99.8%
Identity: 9%
PDB header:hydrolase
Chain: A: PDB Molecule:putative phosphatase;
PDBTitle: crystal structure of putative phosphatase (np_812416.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.77 a resolution

Phyre2

PDB 2dg1 chain A domain 1

3D model

Region: 46 - 285
Aligned: 227
Modelled: 240
Confidence: 99.8%
Identity: 12%
Fold: 6-bladed beta-propeller
Superfamily: Calcium-dependent phosphotriesterase
Family: SGL-like

Phyre2

PDB 3tc9 chain B

3D model

Region: 55 - 283
Aligned: 219
Modelled: 221
Confidence: 99.8%
Identity: 11%
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical hydrolase;
PDBTitle: crystal structure of a hypothetical hydrolase (bt_3476) from2 bacteroides thetaiotaomicron vpi-5482 at 2.23 a resolution

Phyre2

PDB 3u4y chain A

3D model

Region: 55 - 285
Aligned: 216
Modelled: 222
Confidence: 99.8%
Identity: 9%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771.

Phyre2

PDB 3e5z chain A

3D model

Region: 49 - 285
Aligned: 224
Modelled: 237
Confidence: 99.8%
Identity: 8%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.

Phyre2

PDB 1npe chain A

3D model

Region: 48 - 284
Aligned: 211
Modelled: 237
Confidence: 99.8%
Identity: 12%
Fold: 6-bladed beta-propeller
Superfamily: YWTD domain
Family: YWTD domain

Phyre2

PDB 3s8v chain A

3D model

Region: 53 - 284
Aligned: 205
Modelled: 232
Confidence: 99.8%
Identity: 12%
PDB header:signaling protein
Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6;
PDBTitle: crystal structure of lrp6-dkk1 complex

Phyre2

PDB 3g4h chain B

3D model

Region: 53 - 284
Aligned: 221
Modelled: 232
Confidence: 99.8%
Identity: 10%
PDB header:hydrolase
Chain: B: PDB Molecule:regucalcin;
PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound)

Phyre2

PDB 3soq chain A

3D model

Region: 57 - 285
Aligned: 203
Modelled: 229
Confidence: 99.8%
Identity: 10%
PDB header:protein binding/antagonist
Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6;
PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide

Phyre2

PDB 1pjx chain A

3D model

Region: 50 - 285
Aligned: 221
Modelled: 235
Confidence: 99.8%
Identity: 12%
Fold: 6-bladed beta-propeller
Superfamily: Calcium-dependent phosphotriesterase
Family: SGL-like

Phyre2

PDB 3bws chain A

3D model

Region: 51 - 284
Aligned: 203
Modelled: 223
Confidence: 99.8%
Identity: 10%
PDB header:unknown function
Chain: A: PDB Molecule:protein lp49;
PDBTitle: crystal structure of the leptospiral antigen lp49

Phyre2
1

c3qqzA_
2

c3fw0A_
3

c3hrpA_
4

c2ghsA_
5

d2ghsa1
6

d2p4oa1
7

c3dr2A_
8

c2qc5A_
9

c2z2pA_
10

c3kyaA_
11

d2dg1a1
12

c3tc9B_
13

c3u4yA_
14

c3e5zA_
15

d1npea_
16

c3s8vA_
17

c3g4hB_
18

c3soqA_
19

d1pjxa_
20

c3bwsA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3qqzA_



100.0 98 PDB header:metal binding protein
Chain: A: PDB Molecule:putative uncharacterized protein yjik;
PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073
2c3fw0A_



99.9 13 PDB header:lyase
Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase;
PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate)
3c3hrpA_



99.9 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of structural genomics protein of unknown function2 (np_812590.1) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a3 resolution
4c2ghsA_



99.9 11 PDB header:calcium-binding protein
Chain: A: PDB Molecule:agr_c_1268p;
PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution
5d2ghsa1



99.9 11 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
6d2p4oa1



99.9 16 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:All0351-like
7c3dr2A_



99.8 12 PDB header:hydrolase
Chain: A: PDB Molecule:exported gluconolactonase;
PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways
8c2qc5A_



99.8 9 PDB header:lyase
Chain: A: PDB Molecule:streptogramin b lactonase;
PDBTitle: streptogramin b lyase structure
9c2z2pA_



99.8 11 PDB header:lyase/antibiotic
Chain: A: PDB Molecule:virginiamycin b lyase;
PDBTitle: crystal structure of catalytically inactive h270a virginiamycin b2 lyase from staphylococcus aureus with quinupristin
10c3kyaA_



99.8 9 PDB header:hydrolase
Chain: A: PDB Molecule:putative phosphatase;
PDBTitle: crystal structure of putative phosphatase (np_812416.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.77 a resolution
11d2dg1a1



99.8 12 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
12c3tc9B_



99.8 11 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical hydrolase;
PDBTitle: crystal structure of a hypothetical hydrolase (bt_3476) from2 bacteroides thetaiotaomicron vpi-5482 at 2.23 a resolution
13c3u4yA_



99.8 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771.
14c3e5zA_



99.8 8 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.
15d1npea_



99.8 12 Fold:6-bladed beta-propeller
Superfamily:YWTD domain
Family:YWTD domain
16c3s8vA_



99.8 12 PDB header:signaling protein
Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6;
PDBTitle: crystal structure of lrp6-dkk1 complex
17c3g4hB_



99.8 10 PDB header:hydrolase
Chain: B: PDB Molecule:regucalcin;
PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound)
18c3soqA_



99.8 10 PDB header:protein binding/antagonist
Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6;
PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide
19d1pjxa_



99.8 12 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
20c3bwsA_



99.8 10 PDB header:unknown function
Chain: A: PDB Molecule:protein lp49;
PDBTitle: crystal structure of the leptospiral antigen lp49
21d1q7fa_



not modelled 99.8 15 Fold:6-bladed beta-propeller
Superfamily:NHL repeat
Family:NHL repeat
22c1n7dA_



not modelled 99.8 7 PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor
23c2p9wA_



not modelled 99.8 15 PDB header:allergen
Chain: A: PDB Molecule:mal s 1 allergenic protein;
PDBTitle: crystal structure of the major malassezia sympodialis allergen mala s2 1
24c2qe8B_



not modelled 99.7 12 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative hydrolase (ava_4197) from anabaena2 variabilis atcc 29413 at 1.35 a resolution
25d1rwia_



not modelled 99.7 14 Fold:6-bladed beta-propeller
Superfamily:NHL repeat
Family:NHL repeat
26c3vh0C_



not modelled 99.7 15 PDB header:protein binding/dna
Chain: C: PDB Molecule:uncharacterized protein ynce;
PDBTitle: crystal structure of e. coli ynce complexed with dna
27c1ijqA_



not modelled 99.7 7 PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: crystal structure of the ldl receptor ywtd-egf domain pair
28c3s94A_



not modelled 99.7 9 PDB header:signaling protein
Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6;
PDBTitle: crystal structure of lrp6-e1e2
29c3nolA_



not modelled 99.7 13 PDB header:transferase
Chain: A: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of zymomonas mobilis glutaminyl cyclase (trigonal2 form)
30d1jofa_



not modelled 99.7 9 Fold:7-bladed beta-propeller
Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme
Family:3-carboxy-cis,cis-mucoante lactonizing enzyme
31d1ijqa1



not modelled 99.7 7 Fold:6-bladed beta-propeller
Superfamily:YWTD domain
Family:YWTD domain
32c2iwaA_



not modelled 99.7 10 PDB header:transferase
Chain: A: PDB Molecule:glutamine cyclotransferase;
PDBTitle: unbound glutaminyl cyclotransferase from carica papaya.
33c3hfqB_



not modelled 99.7 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein lp_2219;
PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118.
34d1v04a_



not modelled 99.6 14 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:Serum paraoxonase/arylesterase 1, PON1
35c3mbrX_



not modelled 99.6 13 PDB header:transferase
Chain: X: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris
36c3a9gA_



not modelled 99.6 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of pqq-dependent sugar dehydrogenase apo-form
37c1qniE_



not modelled 99.6 10 PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrous-oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution
38c3fgbB_



not modelled 99.6 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn;
PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b.
39c3dsmA_



not modelled 99.6 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bacuni_02894;
PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d.
40c3dm0A_



not modelled 99.6 11 PDB header:sugar binding protein,signaling protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with
PDBTitle: maltose binding protein fusion with rack1 from a. thaliana
41c2oajA_



not modelled 99.6 10 PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:protein sni1;
PDBTitle: crystal structure of sro7 from s. cerevisiae
42d1jmxb_



not modelled 99.6 17 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Quinohemoprotein amine dehydrogenase B chain
43c2fp8A_



not modelled 99.6 15 PDB header:lyase
Chain: A: PDB Molecule:strictosidine synthase;
PDBTitle: structure of strictosidine synthase, the biosynthetic entry to the2 monoterpenoid indole alkaloid family
44c3mkqA_



not modelled 99.6 11 PDB header:transport protein
Chain: A: PDB Molecule:coatomer beta'-subunit;
PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat
45d1crua_



not modelled 99.6 15 Fold:6-bladed beta-propeller
Superfamily:Soluble quinoprotein glucose dehydrogenase
Family:Soluble quinoprotein glucose dehydrogenase
46c1fwxB_



not modelled 99.6 5 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrous oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans
47c1gq1B_



not modelled 99.6 7 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase;
PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form
48d1qnia2



not modelled 99.5 10 Fold:7-bladed beta-propeller
Superfamily:Nitrous oxide reductase, N-terminal domain
Family:Nitrous oxide reductase, N-terminal domain
49c2g8sB_



not modelled 99.5 16 PDB header:sugar binding protein
Chain: B: PDB Molecule:glucose/sorbosone dehydrogenases;
PDBTitle: crystal structure of the soluble aldose sugar dehydrogenase2 (asd) from escherichia coli in the apo-form
50c3sbrF_



not modelled 99.5 8 PDB header:oxidoreductase
Chain: F: PDB Molecule:nitrous-oxide reductase;
PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate
51d1qksa2



not modelled 99.5 9 Fold:8-bladed beta-propeller
Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
52c1nnoA_



not modelled 99.5 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa
53c2ismA_



not modelled 99.5 11 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of the putative oxidoreductase (glucose2 dehydrogenase) (ttha0570) from thermus theromophilus hb8
54c3nokB_



not modelled 99.5 10 PDB header:transferase
Chain: B: PDB Molecule:glutaminyl cyclase;
PDBTitle: crystal structure of myxococcus xanthus glutaminyl cyclase
55d1pbyb_



not modelled 99.5 17 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Quinohemoprotein amine dehydrogenase B chain
56d1ri6a_



not modelled 99.4 7 Fold:7-bladed beta-propeller
Superfamily:Putative isomerase YbhE
Family:Putative isomerase YbhE
57c1l0qC_



not modelled 99.4 14 PDB header:protein binding
Chain: C: PDB Molecule:surface layer protein;
PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein
58d1fwxa2



not modelled 99.4 10 Fold:7-bladed beta-propeller
Superfamily:Nitrous oxide reductase, N-terminal domain
Family:Nitrous oxide reductase, N-terminal domain
59c2j57J_



not modelled 99.4 10 PDB header:oxidoreductase
Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain;
PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin.
60d2madh_



not modelled 99.4 8 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
61c3lrvA_



not modelled 99.4 9 PDB header:splicing
Chain: A: PDB Molecule:pre-mrna-splicing factor 19;
PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function.
62c1nr0A_



not modelled 99.4 6 PDB header:structural protein
Chain: A: PDB Molecule:actin interacting protein 1;
PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1).
63c3iytG_



not modelled 99.4 13 PDB header:apoptosis
Chain: G: PDB Molecule:apoptotic protease-activating factor 1;
PDBTitle: structure of an apoptosome-procaspase-9 card complex
64c3dasA_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the pqq-bound form of aldose sugar2 dehydrogenase (adh) from streptomyces coelicolor
65d1nira2



not modelled 99.3 9 Fold:8-bladed beta-propeller
Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
66c3jroA_



not modelled 99.3 13 PDB header:transport protein, structural protein
Chain: A: PDB Molecule:fusion protein of protein transport protein sec13
PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice
67c1pi6A_



not modelled 99.3 12 PDB header:protein binding
Chain: A: PDB Molecule:actin interacting protein 1;
PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form
68c1k32E_



not modelled 99.3 10 PDB header:hydrolase
Chain: E: PDB Molecule:tricorn protease;
PDBTitle: crystal structure of the tricorn protease
69c1n6dE_



not modelled 99.3 10 PDB header:hydrolase
Chain: E: PDB Molecule:tricorn protease;
PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative
70c2h47F_



not modelled 99.3 9 PDB header:oxidoreductase/electron transport
Chain: F: PDB Molecule:aromatic amine dehydrogenase;
PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
71d1k32a3



not modelled 99.2 10 Fold:7-bladed beta-propeller
Superfamily:Tricorn protease domain 2
Family:Tricorn protease domain 2
72c3c75J_



not modelled 99.2 12 PDB header:oxidoreductase
Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain;
PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin
73c2aq5A_



not modelled 99.2 16 PDB header:structural protein
Chain: A: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of murine coronin-1
74d1tl2a_



not modelled 99.2 10 Fold:5-bladed beta-propeller
Superfamily:Tachylectin-2
Family:Tachylectin-2
75d1l0qa2



not modelled 99.2 13 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:YVTN repeat
76c2vduB_



not modelled 99.2 7 PDB header:transferase
Chain: B: PDB Molecule:trna (guanine-n(7)-)-methyltransferase-
PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex
77c2w8bB_



not modelled 99.2 12 PDB header:protein transport/membrane protein
Chain: B: PDB Molecule:protein tolb;
PDBTitle: crystal structure of processed tolb in complex with pal
78c3q6kA_



not modelled 99.2 11 PDB header:protein binding
Chain: A: PDB Molecule:43.2 kda salivary protein;
PDBTitle: salivary protein from lutzomyia longipalpis
79c2i0tB_



not modelled 99.1 9 PDB header:oxidoreductase
Chain: B: PDB Molecule:aromatic amine dehydrogenase;
PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase
80d2bbkh_



not modelled 99.1 10 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
81d1nr0a1



not modelled 99.1 10 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
82c3dw8B_



not modelled 99.1 9 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2a 55 kda regulatory
PDBTitle: structure of a protein phosphatase 2a holoenzyme with b55 subunit
83c2w18A_



not modelled 99.0 12 PDB header:nuclear protein
Chain: A: PDB Molecule:partner and localizer of brca2;
PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2
84c3no2A_



not modelled 99.0 13 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein of unknown function (baccac_01654) from2 bacteroides caccae at 1.35 a resolution
85c2ivzD_



not modelled 99.0 10 PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain
86d1h6la_



not modelled 99.0 14 Fold:6-bladed beta-propeller
Superfamily:Thermostable phytase (3-phytase)
Family:Thermostable phytase (3-phytase)
87c3frxB_



not modelled 99.0 15 PDB header:signaling protein
Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta-
PDBTitle: crystal structure of the yeast orthologue of rack1, asc1.
88c2j04B_



not modelled 99.0 7 PDB header:transcription
Chain: B: PDB Molecule:ydr362cp;
PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic
89d1ospo_



not modelled 98.9 9 Fold:open-sided beta-meander
Superfamily:Outer surface protein
Family:Outer surface protein
90d1gxra_



not modelled 98.9 14 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
91c3ei4D_



not modelled 98.9 12 PDB header:dna binding protein
Chain: D: PDB Molecule:dna damage-binding protein 2;
PDBTitle: structure of the hsddb1-hsddb2 complex
92c3acpA_



not modelled 98.9 12 PDB header:chaperone
Chain: A: PDB Molecule:wd repeat-containing protein ygl004c;
PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome
93d1xfda1



not modelled 98.9 10 Fold:8-bladed beta-propeller
Superfamily:DPP6 N-terminal domain-like
Family:DPP6 N-terminal domain-like
94c2iwkB_



not modelled 98.9 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrous oxide reductase;
PDBTitle: inhibitor-bound form of nitrous oxide reductase from2 achromobacter cycloclastes at 1.7 angstrom resolution
95c1r5mA_



not modelled 98.9 12 PDB header:transcription
Chain: A: PDB Molecule:sir4-interacting protein sif2;
PDBTitle: crystal structure of the c-terminal wd40 domain of sif2
96c3dwlH_



not modelled 98.8 8 PDB header:structural protein
Chain: H: PDB Molecule:actin-related protein 2/3 complex subunit 1;
PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
97d2bgra1



not modelled 98.8 9 Fold:8-bladed beta-propeller
Superfamily:DPP6 N-terminal domain-like
Family:DPP6 N-terminal domain-like
98c3fhcA_



not modelled 98.8 10 PDB header:transport protein/hydrolase
Chain: A: PDB Molecule:nuclear pore complex protein nup214;
PDBTitle: crystal structure of human dbp5 in complex with nup214
99c2pm9A_



not modelled 98.8 16 PDB header:protein transport
Chain: A: PDB Molecule:protein transport protein sec31;
PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat
100c2pbiB_



not modelled 98.8 12 PDB header:signaling protein
Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta 5;
PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure
101d1orva1



not modelled 98.8 12 Fold:8-bladed beta-propeller
Superfamily:DPP6 N-terminal domain-like
Family:DPP6 N-terminal domain-like
102c3iz6a_



not modelled 98.8 16 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
103c2oitA_



not modelled 98.7 9 PDB header:oncoprotein
Chain: A: PDB Molecule:nucleoporin 214kda;
PDBTitle: crystal structure of the n-terminal domain of the human2 proto-oncogene nup214/can
104d1yfqa_



not modelled 98.7 9 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:Cell cycle arrest protein BUB3
105c2wg3C_



not modelled 98.7 14 PDB header:signaling protein
Chain: C: PDB Molecule:hedgehog-interacting protein;
PDBTitle: crystal structure of the complex between human hedgehog-2 interacting protein hip and desert hedgehog without calcium
106c3i2nA_



not modelled 98.7 10 PDB header:transcription
Chain: A: PDB Molecule:wd repeat-containing protein 92;
PDBTitle: crystal structure of wd40 repeats protein wdr92
107d1k8kc_



not modelled 98.6 11 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
108d1k32a2



not modelled 98.6 8 Fold:6-bladed beta-propeller
Superfamily:Tricorn protease N-terminal domain
Family:Tricorn protease N-terminal domain
109c3pe7A_



not modelled 98.6 10 PDB header:lyase
Chain: A: PDB Molecule:oligogalacturonate lyase;
PDBTitle: oligogalacturonate lyase in complex with manganese
110c2gnqA_



not modelled 98.6 15 PDB header:transcription
Chain: A: PDB Molecule:wd-repeat protein 5;
PDBTitle: structure of wdr5
111c3greA_



not modelled 98.6 11 PDB header:signaling protein,protein binding
Chain: A: PDB Molecule:serine/threonine-protein kinase vps15;
PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain
112c3ei3B_



not modelled 98.6 12 PDB header:dna binding protein
Chain: B: PDB Molecule:dna damage-binding protein 2;
PDBTitle: structure of the hsddb1-drddb2 complex
113d1tbga_



not modelled 98.6 10 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
114d1vyhc1



not modelled 98.5 13 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
115c1vyhT_



not modelled 98.5 13 PDB header:hydrolase
Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib
PDBTitle: paf-ah holoenzyme: lis1/alfa2
116d1nr0a2



not modelled 98.5 13 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
117c1xfdD_



not modelled 98.5 8 PDB header:membrane protein
Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6;
PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family
118c3mmyE_



not modelled 98.4 11 PDB header:nuclear protein
Chain: E: PDB Molecule:mrna export factor;
PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1
119c3eg6A_



not modelled 98.4 16 PDB header:protein binding
Chain: A: PDB Molecule:wd repeat-containing protein 5;
PDBTitle: structure of wdr5 bound to mll1 peptide
120d1nexb2



not modelled 98.4 9 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0