Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A9S5
DateThu Jan 5 11:11:14 GMT 2012
Unique Job ID89791e8688e6e8f0

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1jq5a_
Top template information
Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
Confidence and coverage
Confidence:100.0% Coverage: 99%
363 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFAQSTVEKSFKDAGLVVE
Secondary structure 
SS confidence 
Disorder  ???????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  IAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKALAHFMGVPVAIAPTIAST
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  DAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGAPARLLAAGIGDALATWFEAR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  ACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAMLAAEQHVVTPALERVIEANTYL
Secondary structure 
SS confidence 
Disorder 
?
??????
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVEEIETVAALS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  HAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGETIHNMPGGATPDQVYAALLVADQYGQ
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .......
Sequence  RFLQEWE
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1jq5 chain A

3D model

Region: 2 - 365
Aligned: 363
Modelled: 364
Confidence: 100.0%
Identity: 49%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1ta9 chain A

3D model

Region: 2 - 365
Aligned: 359
Modelled: 364
Confidence: 100.0%
Identity: 42%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe

Phyre2

PDB 3uhj chain E

3D model

Region: 2 - 360
Aligned: 352
Modelled: 359
Confidence: 100.0%
Identity: 47%
PDB header:oxidoreductase
Chain: E: PDB Molecule:probable glycerol dehydrogenase;
PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021

Phyre2

PDB 1kq3 chain A

3D model

Region: 1 - 363
Aligned: 360
Modelled: 363
Confidence: 100.0%
Identity: 53%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 3ox4 chain D

3D model

Region: 2 - 355
Aligned: 333
Modelled: 350
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor

Phyre2

PDB 3bfj chain K

3D model

Region: 2 - 355
Aligned: 333
Modelled: 351
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase

Phyre2

PDB 1vlj chain A

3D model

Region: 1 - 355
Aligned: 335
Modelled: 351
Confidence: 100.0%
Identity: 21%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1oj7 chain A

3D model

Region: 1 - 355
Aligned: 334
Modelled: 348
Confidence: 100.0%
Identity: 19%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1rrm chain A

3D model

Region: 1 - 355
Aligned: 332
Modelled: 354
Confidence: 100.0%
Identity: 23%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 1o2d chain A

3D model

Region: 1 - 355
Aligned: 326
Modelled: 355
Confidence: 100.0%
Identity: 20%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Iron-containing alcohol dehydrogenase

Phyre2

PDB 3iv7 chain B

3D model

Region: 1 - 355
Aligned: 327
Modelled: 351
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase iv;
PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution

Phyre2

PDB 3hl0 chain B

3D model

Region: 2 - 355
Aligned: 327
Modelled: 348
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: B: PDB Molecule:maleylacetate reductase;
PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens

Phyre2

PDB 3jzd chain A

3D model

Region: 2 - 355
Aligned: 327
Modelled: 353
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution

Phyre2

PDB 3ce9 chain A

3D model

Region: 2 - 360
Aligned: 345
Modelled: 357
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution

Phyre2

PDB 3rf7 chain A

3D model

Region: 3 - 354
Aligned: 322
Modelled: 334
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution

Phyre2

PDB 3okf chain A

3D model

Region: 1 - 354
Aligned: 326
Modelled: 337
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae

Phyre2

PDB 1sg6 chain A

3D model

Region: 8 - 352
Aligned: 327
Modelled: 330
Confidence: 100.0%
Identity: 19%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Dehydroquinate synthase, DHQS

Phyre2

PDB 1xah chain A

3D model

Region: 1 - 328
Aligned: 295
Modelled: 316
Confidence: 100.0%
Identity: 19%
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+

Phyre2

PDB 1ujn chain A

3D model

Region: 1 - 361
Aligned: 322
Modelled: 336
Confidence: 100.0%
Identity: 17%
Fold: Dehydroquinate synthase-like
Superfamily: Dehydroquinate synthase-like
Family: Dehydroquinate synthase, DHQS

Phyre2

PDB 2gru chain B

3D model

Region: 10 - 355
Aligned: 323
Modelled: 326
Confidence: 100.0%
Identity: 14%
PDB header:lyase
Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase;
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+

Phyre2
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d1jq5a_
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c1ta9A_
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c3uhjE_
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d1kq3a_
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c3ox4D_
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c3bfjK_
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d1vlja_
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d1oj7a_
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d1rrma_
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d1o2da_
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c3iv7B_
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c3hl0B_
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c3jzdA_
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c3ce9A_
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c3rf7A_
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c3okfA_
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d1sg6a_
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c1xahA_
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d1ujna_
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c2gruB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1jq5a_
100.0 49 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
2c1ta9A_
100.0 42 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe
3c3uhjE_
100.0 47 PDB header:oxidoreductase
Chain: E: PDB Molecule:probable glycerol dehydrogenase;
PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021
4d1kq3a_
100.0 53 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
5c3ox4D_
100.0 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor
6c3bfjK_
100.0 24 PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase
7d1vlja_
100.0 21 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
8d1oj7a_
100.0 19 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
9d1rrma_
100.0 23 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
10d1o2da_
100.0 20 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
11c3iv7B_
100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase iv;
PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution
12c3hl0B_
100.0 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:maleylacetate reductase;
PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens
13c3jzdA_
100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution
14c3ce9A_
100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution
15c3rf7A_
100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution
16c3okfA_
100.0 17 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae
17d1sg6a_
100.0 19 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
18c1xahA_
100.0 19 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+
19d1ujna_
100.0 17 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
20c2gruB_
100.0 14 PDB header:lyase
Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase;
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+
21c3clhA_
not modelled 100.0 19 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori
22c3rggD_
not modelled 98.0 11 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
23c3orsD_
not modelled 98.0 11 PDB header:isomerase,biosynthetic protein
Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
24d1qcza_
not modelled 98.0 14 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
25d1o4va_
not modelled 97.9 16 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
26c3lp6D_
not modelled 97.9 12 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
27d1u11a_
not modelled 97.9 10 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
28c2fw9A_
not modelled 97.9 10 PDB header:lyase
Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
29d1xmpa_
not modelled 97.7 11 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
30c3trhI_
not modelled 97.7 14 PDB header:lyase
Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase
PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
31c2h31A_
not modelled 97.5 13 PDB header:ligase, lyase
Chain: A: PDB Molecule:multifunctional protein ade2;
PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
32c2ywxA_
not modelled 97.2 14 PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii
33d2p1ra1
not modelled 96.7 15 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
34d2bona1
not modelled 96.7 14 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
35d2jgra1
not modelled 96.7 14 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
36c2bonB_
not modelled 96.6 15 PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)
37d2qv7a1
not modelled 96.5 11 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
38d1u0ta_
not modelled 96.5 25 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
39c3s40C_
not modelled 96.5 19 PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
40c2qv7A_
not modelled 96.5 11 PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg
41c2an1D_
not modelled 93.9 25 PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
42d1pfka_
not modelled 93.7 20 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
43c2iy3A_
not modelled 93.5 21 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
44c3opyB_
not modelled 93.4 16 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
45c3opyH_
not modelled 93.4 16 PDB header:transferase
Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
46d4pfka_
not modelled 93.4 17 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
47c1zxxA_
not modelled 93.2 16 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
48d1v4va_
not modelled 93.1 19 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
49c3opyG_
not modelled 92.9 15 PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
50c2j37W_
not modelled 92.8 7 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
51c3opyE_
not modelled 92.8 15 PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
52c3dm5A_
not modelled 92.5 10 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
53c3o8nA_
not modelled 92.4 19 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase, muscle type;
PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle
54c3o8oC_
not modelled 92.1 15 PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
55c3o8oB_
not modelled 91.9 13 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase subunit beta;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
56c2higA_
not modelled 91.7 15 PDB header:transferase
Chain: A: PDB Molecule:6-phospho-1-fructokinase;
PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei.
57c1z0zC_
not modelled 91.7 25 PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
58c3pfnB_
not modelled 91.5 17 PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase
59d1z0sa1
not modelled 91.5 25 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
60d2f48a1
not modelled 91.5 22 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
61c2i2aA_
not modelled 91.4 11 PDB header:transferase
Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1;
PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes
62c1yt5A_
not modelled 91.0 17 PDB header:transferase
Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of nad kinase from thermotoga maritima
63c3k2qA_
not modelled 90.3 22 PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
64c3s99A_
not modelled 89.9 18 PDB header:lipid binding protein
Chain: A: PDB Molecule:basic membrane lipoprotein;
PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak
65c2q5cA_
not modelled 89.8 9 PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
66c2qy9A_
not modelled 89.8 14 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
67c2og2A_
not modelled 89.1 12 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
68d2pjua1
not modelled 88.6 16 Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
69d2ez9a1
not modelled 88.5 23 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
70c3dmdA_
not modelled 88.4 18 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
71c2pjuD_
not modelled 87.6 16 PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr
72c1vmaA_
not modelled 87.5 10 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
73c2yhsA_
not modelled 87.5 14 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
74c3rfqC_
not modelled 87.5 18 PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
75d1qh8a_
not modelled 87.4 17 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
76d1q6za1
not modelled 87.3 20 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
77c2is8A_
not modelled 87.1 12 PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
78d1qo0a_
not modelled 86.8 17 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
79c1j8yF_
not modelled 86.7 14 PDB header:signaling protein
Chain: F: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant
80d1pvda1
not modelled 86.3 21 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
81d1j8yf2
not modelled 85.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
82d1ovma1
not modelled 85.5 17 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
83d1y5ea1
not modelled 85.1 12 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
84c2hqbA_
not modelled 84.2 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator of comk gene;
PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
85d1vh3a_
not modelled 83.8 15 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
86c1qzwC_
not modelled 83.7 11 PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
87d1m1na_
not modelled 83.6 13 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
88d1a4ia2
not modelled 83.5 17 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Tetrahydrofolate dehydrogenase/cyclohydrolase
89c2cnwF_
not modelled 83.3 13 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
90d1zpda1
not modelled 83.2 14 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
91d1ybha1
not modelled 82.8 11 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
92c3afoB_
not modelled 82.7 10 PDB header:transferase
Chain: B: PDB Molecule:nadh kinase pos5;
PDBTitle: crystal structure of yeast nadh kinase complexed with nadh
93d2djia1
not modelled 82.5 17 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
94d1xi8a3
not modelled 82.1 13 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
95c3sg0A_
not modelled 82.0 12 PDB header:signaling protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2
96c2pjkA_
not modelled 81.6 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor
PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii
97d1o8bb1
not modelled 81.6 24 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
98c2j289_
not modelled 81.1 17 PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
99c3l4eA_
not modelled 80.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
100d1t9ba1
not modelled 80.5 13 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
101c2jkzB_
not modelled 80.2 23 PDB header:transferase
Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase;
PDBTitle: saccharomyces cerevisiae hypoxanthine-guanine2 phosphoribosyltransferase in complex with gmp (guanosine 5'3 -monophosphate) (orthorhombic crystal form)
102c3b9qA_
not modelled 80.1 14 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
103d2gm3a1
not modelled 80.1 16 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
104d1mkza_
not modelled 79.7 15 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
105d1miob_
not modelled 79.6 12 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
106c2g4rB_
not modelled 79.1 12 PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga
107c3i09A_
not modelled 78.8 12 PDB header:transport protein
Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein;
PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution
108c2xecD_
not modelled 78.6 16 PDB header:isomerase
Chain: D: PDB Molecule:putative maleate isomerase;
PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris
109c2qk4A_
not modelled 78.5 14 PDB header:ligase
Chain: A: PDB Molecule:trifunctional purine biosynthetic protein adenosine-3;
PDBTitle: human glycinamide ribonucleotide synthetase
110c3u7jA_
not modelled 78.0 21 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
111c3q41B_
not modelled 77.7 11 PDB header:transport protein
Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1;
PDBTitle: crystal structure of the glun1 n-terminal domain (ntd)
112d2ihta1
not modelled 77.7 13 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
113c2j7pA_
not modelled 77.6 21 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
114c3kg2A_
not modelled 77.4 10 PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:glutamate receptor 2;
PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775
115c3mdqA_
not modelled 76.4 16 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution
116d2g2ca1
not modelled 76.2 12 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
117c3p3wC_
not modelled 76.2 10 PDB header:transport protein
Chain: C: PDB Molecule:glutamate receptor 3;
PDBTitle: structure of a dimeric glua3 n-terminal domain (ntd) at 4.2 a2 resolution
118c2zwmA_
not modelled 75.9 19 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
119c3snrA_
not modelled 75.1 15 PDB header:transport protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris.
120c3ct7E_
not modelled 74.8 11 PDB header:isomerase
Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase;
PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0