Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	F	H	L	I	A	P	S	G	Y	C	I	K	Q	H	A	A	L	R	G	I	Q	R	L	T	D	A	G	H	Q	V	N	N	V	E	V	I	A	R	R	C	E	R	F	A	G	T	E	T	E	R	L	E	D	L	N	S	L
Secondary structure
SS confidence
Disorder		?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	R	L	T	T	P	N	T	I	V	L	A	V	R	G	G	Y	G	A	S	R	L	L	A	D	I	D	W	Q	A	L	V	A	R	Q	Q	H	D	P	L	L	I	C	G	H	S	D	F	T	A	I	Q	C	G	L	L	A	H	G	N
Secondary structure
SS confidence
Disorder																																	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	I	T	F	S	G	P	M	L	V	A	N	F	G	A	D	E	L	N	A	F	T	E	H	H	F	W	L	A	L	R	N	E	T	F	T	I	E	W	Q	G	E	G	P	T	C	R	A	E	G	T	L	W	G	G	N	L	A	M	L
Secondary structure
SS confidence
Disorder												?																				?	?	?	?				?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	S	L	I	G	T	P	W	M	P	K	I	E	N	G	I	L	V	L	E	D	I	N	E	H	P	F	R	V	E	R	M	L	L	Q	L	Y	H	A	G	I	L	P	R	Q	K	A	I	I	L	G	S	F	S	G	S	T	P	N	D
Secondary structure
SS confidence
Disorder																																																									?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Y	D	A	G	Y	N	L	E	S	V	Y	A	F	L	R	S	R	L	S	I	P	L	I	T	G	L	D	F	G	H	E	Q	R	T	V	T	L	P	L	G	A	H	A	I	L	N	N	T	R	E	G	T	Q	L	T	I	S	G	H	P
Secondary structure
SS confidence
Disorder		?	?																																																									?	?
Disorder confidence
		.	.	.	.
Sequence		V	L	K	M
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3gjz chain B Region: 2 - 299 Aligned: 291 Modelled: 287 Confidence: 100.0% Identity: 27% PDB header:immune system Chain: B: PDB Molecule:microcin immunity protein mccf; PDBTitle: crystal structure of microcin immunity protein mccf from bacillus2 anthracis str. ames Phyre2 PDB 1zrs chain B Region: 2 - 292 Aligned: 283 Modelled: 291 Confidence: 100.0% Identity: 28% PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: wild-type ld-carboxypeptidase Phyre2 PDB 3g23 chain A Region: 2 - 280 Aligned: 266 Modelled: 279 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:ld-carboxypeptidase a; PDBTitle: crystal structure of a ld-carboxypeptidase a (saro_1426) from2 novosphingobium aromaticivorans dsm at 1.89 a resolution Phyre2 PDB 1zl0 chain A domain 2 Region: 3 - 151 Aligned: 143 Modelled: 149 Confidence: 100.0% Identity: 25% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: LD-carboxypeptidase A N-terminal domain-like Phyre2 PDB 2aun chain A domain 2 Region: 2 - 132 Aligned: 125 Modelled: 131 Confidence: 100.0% Identity: 27% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: LD-carboxypeptidase A N-terminal domain-like Phyre2 PDB 2aun chain A domain 1 Region: 140 - 289 Aligned: 148 Modelled: 150 Confidence: 100.0% Identity: 30% Fold: The "swivelling" beta/beta/alpha domain Superfamily: LD-carboxypeptidase A C-terminal domain-like Family: LD-carboxypeptidase A C-terminal domain-like Phyre2 PDB 1zl0 chain A domain 1 Region: 163 - 292 Aligned: 128 Modelled: 130 Confidence: 100.0% Identity: 34% Fold: The "swivelling" beta/beta/alpha domain Superfamily: LD-carboxypeptidase A C-terminal domain-like Family: LD-carboxypeptidase A C-terminal domain-like Phyre2 PDB 2xec chain D Region: 1 - 121 Aligned: 107 Modelled: 121 Confidence: 94.0% Identity: 15% PDB header:isomerase Chain: D: PDB Molecule:putative maleate isomerase; PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris Phyre2 PDB 2jgr chain A domain 1 Region: 6 - 81 Aligned: 62 Modelled: 76 Confidence: 85.1% Identity: 15% Fold: NAD kinase/diacylglycerol kinase-like Superfamily: NAD kinase/diacylglycerol kinase-like Family: Diacylglycerol kinase-like Phyre2 PDB 2dgd chain D Region: 3 - 121 Aligned: 104 Modelled: 118 Confidence: 85.1% Identity: 9% PDB header:lyase Chain: D: PDB Molecule:223aa long hypothetical arylmalonate decarboxylase; PDBTitle: crystal structure of st0656, a function unknown protein from2 sulfolobus tokodaii Phyre2 PDB 2bon chain A domain 1 Region: 6 - 81 Aligned: 62 Modelled: 76 Confidence: 85.0% Identity: 15% Fold: NAD kinase/diacylglycerol kinase-like Superfamily: NAD kinase/diacylglycerol kinase-like Family: Diacylglycerol kinase-like Phyre2 PDB 1t9h chain A domain 2 Region: 3 - 139 Aligned: 126 Modelled: 137 Confidence: 79.5% Identity: 10% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: G proteins Phyre2 PDB 2bon chain B Region: 6 - 81 Aligned: 62 Modelled: 76 Confidence: 78.5% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:lipid kinase; PDBTitle: structure of an escherichia coli lipid kinase (yegs) Phyre2 PDB 2csu chain A domain 3 Region: 3 - 127 Aligned: 120 Modelled: 124 Confidence: 78.0% Identity: 10% Fold: Flavodoxin-like Superfamily: Succinyl-CoA synthetase domains Family: Succinyl-CoA synthetase domains Phyre2 PDB 2qv7 chain A domain 1 Region: 6 - 105 Aligned: 81 Modelled: 100 Confidence: 77.2% Identity: 12% Fold: NAD kinase/diacylglycerol kinase-like Superfamily: NAD kinase/diacylglycerol kinase-like Family: Diacylglycerol kinase-like Phyre2 PDB 2qv7 chain A Region: 6 - 81 Aligned: 64 Modelled: 76 Confidence: 76.2% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase dgkb; PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg Phyre2 PDB 1t9h chain A Region: 3 - 127 Aligned: 114 Modelled: 125 Confidence: 74.1% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. Phyre2 PDB 1xjc chain A Region: 1 - 71 Aligned: 69 Modelled: 70 Confidence: 73.4% Identity: 14% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 PDB 3c5y chain D Region: 4 - 80 Aligned: 74 Modelled: 76 Confidence: 67.8% Identity: 18% PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution Phyre2 PDB 3qi7 chain A Region: 4 - 72 Aligned: 62 Modelled: 69 Confidence: 66.8% Identity: 6% PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Phyre2 1 c3gjzB_ 2 c1zrsB_ 3 c3g23A_ 4 d1zl0a2 5 d2auna2 6 d2auna1 7 d1zl0a1 8 c2xecD_ 9 d2jgra1 10 c2dgdD_ 11 d2bona1 12 d1t9ha2 13 c2bonB_ 14 d2csua3 15 d2qv7a1 16 c2qv7A_ 17 c1t9hA_ 18 d1xjca_ 19 c3c5yD_ 20 c3qi7A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3gjzB_ 100.0 27 PDB header:immune system Chain: B: PDB Molecule:microcin immunity protein mccf; PDBTitle: crystal structure of microcin immunity protein mccf from bacillus2 anthracis str. ames 2 c1zrsB_ 100.0 28 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: wild-type ld-carboxypeptidase 3 c3g23A_ 100.0 22 PDB header:hydrolase Chain: A: PDB Molecule:ld-carboxypeptidase a; PDBTitle: crystal structure of a ld-carboxypeptidase a (saro_1426) from2 novosphingobium aromaticivorans dsm at 1.89 a resolution 4 d1zl0a2 100.0 25 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 5 d2auna2 100.0 27 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 6 d2auna1 100.0 30 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LD-carboxypeptidase A C-terminal domain-like Family:LD-carboxypeptidase A C-terminal domain-like 7 d1zl0a1 100.0 34 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LD-carboxypeptidase A C-terminal domain-like Family:LD-carboxypeptidase A C-terminal domain-like 8 c2xecD_ 94.0 15 PDB header:isomerase Chain: D: PDB Molecule:putative maleate isomerase; PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris 9 d2jgra1 85.1 15 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 10 c2dgdD_ 85.1 9 PDB header:lyase Chain: D: PDB Molecule:223aa long hypothetical arylmalonate decarboxylase; PDBTitle: crystal structure of st0656, a function unknown protein from2 sulfolobus tokodaii 11 d2bona1 85.0 15 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 12 d1t9ha2 79.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 13 c2bonB_ 78.5 13 PDB header:transferase Chain: B: PDB Molecule:lipid kinase; PDBTitle: structure of an escherichia coli lipid kinase (yegs) 14 d2csua3 78.0 10 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 15 d2qv7a1 77.2 12 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 16 c2qv7A_ 76.2 14 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase dgkb; PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg 17 c1t9hA_ 74.1 7 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 18 d1xjca_ 73.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 19 c3c5yD_ 67.8 18 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 20 c3qi7A_ 66.8 6 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 21 d1tlfa_ not modelled 66.6 15 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 22 d2p1ra1 not modelled 65.8 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 23 c1jyeA_ not modelled 64.7 17 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 24 d1jyea_ not modelled 64.7 17 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 25 d1pswa_ not modelled 63.9 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 26 c3s40C_ not modelled 63.0 13 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 27 c2rcnA_ not modelled 62.7 11 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 28 d1eucb1 not modelled 62.5 13 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 29 d2dria_ not modelled 60.1 7 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 30 c3ksmA_ not modelled 59.9 13 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 31 d1byka_ not modelled 58.7 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 32 c2jt1A_ not modelled 58.2 28 PDB header:transcription Chain: A: PDB Molecule:pefi protein; PDBTitle: solution nmr structure of pefi (plasmid-encoded fimbriae regulatory)2 protein from salmonella typhimurium. northeast structural genomics3 target str82 33 c3d8uA_ not modelled 56.0 29 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 34 c4a2iV_ not modelled 55.6 7 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 35 c2vk2A_ not modelled 54.2 10 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 36 c2qu7B_ not modelled 52.4 13 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus 37 c3dmyA_ not modelled 51.8 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein fdra; PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli 38 c3l6uA_ not modelled 50.6 1 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum 39 c2an1D_ not modelled 49.3 22 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 40 c3l49D_ not modelled 47.4 11 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 41 c3h5oB_ not modelled 46.7 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 42 c3mizB_ not modelled 46.6 11 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli 43 c3jy6B_ not modelled 45.9 15 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis 44 c1kv3F_ not modelled 45.5 25 PDB header:transferase Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: human tissue transglutaminase in gdp bound form 45 c3g85A_ not modelled 43.7 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum 46 c2is8A_ not modelled 43.2 20 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 47 d2nu7b1 not modelled 42.9 13 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 48 c3ma0A_ not modelled 42.1 10 PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli 49 d1h6za2 not modelled 40.0 12 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 50 c3kkeA_ not modelled 39.2 19 PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis 51 c3brqA_ not modelled 38.7 10 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 52 d1vhxa_ not modelled 38.3 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 53 c3l4eA_ not modelled 37.9 17 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 54 d1nu0a_ not modelled 37.8 10 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 55 c1xuzA_ not modelled 37.7 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 56 c2rgyA_ not modelled 37.3 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 57 c3bilA_ not modelled 37.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum 58 c3k9cA_ not modelled 35.7 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species. 59 c2ioyB_ not modelled 35.0 4 PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein 60 c3o3nA_ not modelled 34.7 6 PDB header:lyase Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 61 c3pfnB_ not modelled 34.7 9 PDB header:transferase Chain: B: PDB Molecule:nad kinase; PDBTitle: crystal structure of human nad kinase 62 d1u0la2 not modelled 34.0 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 63 c2rjoA_ not modelled 33.5 19 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 64 c2pjkA_ not modelled 32.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 65 c2vlbC_ not modelled 31.9 15 PDB header:lyase Chain: C: PDB Molecule:arylmalonate decarboxylase; PDBTitle: structure of unliganded arylmalonate decarboxylase 66 c3o1hB_ not modelled 31.8 12 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 67 c2q9uB_ not modelled 30.7 17 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 68 c3e61A_ not modelled 29.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus 69 c3qk7C_ not modelled 28.6 15 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 70 d1a9xb1 not modelled 28.3 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Carbamoyl phosphate synthetase, small subunit N-terminal domain Family:Carbamoyl phosphate synthetase, small subunit N-terminal domain 71 c3gv0A_ not modelled 27.9 5 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens 72 d1uf3a_ not modelled 27.2 11 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 73 d2csua2 not modelled 27.0 14 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 74 d1vlia2 not modelled 26.8 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 75 c3o74A_ not modelled 26.4 15 PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida 76 c1pyoA_ not modelled 26.4 15 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-2; PDBTitle: crystal structure of human caspase-2 in complex with acetyl-leu-asp-2 glu-ser-asp-cho 77 d2q22a1 not modelled 25.4 15 Fold:Ava3019-like Superfamily:Ava3019-like Family:Ava3019-like 78 c2yv5A_ not modelled 24.8 13 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 79 c1l9mB_ not modelled 24.6 28 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 80 c2ftpA_ not modelled 24.5 10 PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa 81 c2hbzA_ not modelled 24.4 12 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-1; PDBTitle: crystal structure of human caspase-1 (arg286->ala, glu390->ala) in2 complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-3 propionylamino]-4-oxo-pentanoic acid (z-vad-fmk) 82 c3fseB_ not modelled 24.3 12 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 83 c3hs3A_ not modelled 24.3 11 PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus 84 c3k4hA_ not modelled 23.7 18 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 85 c2ixaA_ not modelled 23.6 14 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 86 c3dbiA_ not modelled 23.1 11 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate 87 c2o20H_ not modelled 22.6 14 PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis 88 c3e3mA_ not modelled 22.1 21 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 89 d3c8ya1 not modelled 21.9 14 Fold:Fe-only hydrogenase Superfamily:Fe-only hydrogenase Family:Fe-only hydrogenase 90 d1g0da4 not modelled 21.4 24 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 91 c2qvcC_ not modelled 20.8 9 PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima 92 c2iksA_ not modelled 20.7 8 PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 93 d1dbqa_ not modelled 20.7 10 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 94 d1fmfa_ not modelled 20.7 27 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 95 d1xn7a_ not modelled 20.6 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG 96 c3ctpB_ not modelled 20.4 10 PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose 97 c1u0lB_ not modelled 20.2 7 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 98 c3c3kA_ not modelled 20.0 10 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes 99 d1tjya_ not modelled 19.9 14 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0