PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4a2iV_

Fold library id	PDB Header	Molecule	Title
c4a2iV_	PDB header: ribosome/hydrolase	Chain: V: PDB Molecule: putative ribosome biogenesis gtpase rsga;	PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor

Links to external resources
Added to library: Sat Nov 5 19:15:11 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L F G E P A E G I V I S R F G M H A D V E S A D G E V H R C N I R R T I R S L V T G D R V V W R P G K V K G I V E A V H E T S V L T R P V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T T T S
T T
T T
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P I A A N I D Q I V I V S A I L P E L S L N I I D R Y L V G C E T L Q V E P L I V L N K I D L L D D E G M D F V N E Q M D I Y R N I G Y R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T
T
G G G
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L M V S S H T Q D G L K P L E E A L T G R I S I F A G Q S G V G K S S L L N A L L G L Q N E I L T N T A A R L Y H F P H G G D V I D S P G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T T T B T T T S
T T S S
S S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . .

Sequence R E F G L W H L E P E Q I T Q G F V E F H D Y L G H C K Y R D C K H D A D P G C A I R E A V E N G A I A E T R F E N Y H R I L E S M A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S G G G G G G T T
S S S T T
S S S
T T
T S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	F	G	E	P	A	E	G	I	V	I	S	R	F	G	M	H	A	D	V	E	S	A	D	G	E	V	H	R	C	N	I	R	R	T	I	R	S	L	V	T	G	D	R	V	V	W	R	P	G	K	V	K	G	I	V	E	A	V	H	E	T	S	V	L	T	R	P	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B													T	T							T	T	S									T	T						T	T								B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	I	A	A	N	I	D	Q	I	V	I	V	S	A	I	L	P	E	L	S	L	N	I	I	D	R	Y	L	V	G	C	E	T	L	Q	V	E	P	L	I	V	L	N	K	I	D	L	L	D	D	E	G	M	D	F	V	N	E	Q	M	D	I	Y	R	N	I	G	Y	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	T	T	T																	T										G	G	G																		T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	M	V	S	S	H	T	Q	D	G	L	K	P	L	E	E	A	L	T	G	R	I	S	I	F	A	G	Q	S	G	V	G	K	S	S	L	L	N	A	L	L	G	L	Q	N	E	I	L	T	N	T	A	A	R	L	Y	H	F	P	H	G	G	D	V	I	D	S	P	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B	T	T	T	T	B	T									T	T	S								T	T	S	S												S	S														T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Sequence	R	E	F	G	L	W	H	L	E	P	E	Q	I	T	Q	G	F	V	E	F	H	D	Y	L	G	H	C	K	Y	R	D	C	K	H	D	A	D	P	G	C	A	I	R	E	A	V	E	N	G	A	I	A	E	T	R	F	E	N	Y	H	R	I	L	E	S	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T														T	S	G	G	G	G	G	G	T	T		S	S	S	T	T			S	S	S		T	T										T	S	S