Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	A	S	A	L	V	C	L	A	P	G	S	E	E	T	E	A	V	T	T	I	D	L	L	V	R	G	G	I	K	V	T	T	A	S	V	A	S	D	G	N	L	A	I	T	C	S	R	G	V	K	L	L	A	D	A	P	L	V
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	V	A	D	G	E	Y	D	V	I	V	L	P	G	G	I	K	G	A	E	C	F	R	D	S	T	L	L	V	E	T	V	K	Q	F	H	R	S	G	R	I	V	A	A	I	C	A	A	P	A	T	V	L	V	P	H	D	I	F	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	G	N	M	T	G	F	P	T	L	K	D	K	I	P	A	E	Q	W	L	D	K	R	V	V	W	D	A	R	V	K	L	L	T	S	Q	G	P	G	T	A	I	D	F	G	L	K	I	I	D	L	L	V	G	R	E	K	A	H	E
Secondary structure
SS confidence
Disorder																	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Sequence		V	A	S	Q	L	V	M	A	A	G	I	Y	N	Y	Y	E
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ab0 chain A domain 1 Region: 2 - 196 Aligned: 195 Modelled: 195 Confidence: 100.0% Identity: 100% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3ot1 chain B Region: 1 - 193 Aligned: 190 Modelled: 190 Confidence: 100.0% Identity: 42% PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein Phyre2 PDB 1p5f chain A Region: 2 - 187 Aligned: 183 Modelled: 185 Confidence: 100.0% Identity: 39% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3ewn chain A Region: 2 - 189 Aligned: 183 Modelled: 187 Confidence: 100.0% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae Phyre2 PDB 3noo chain B Region: 2 - 192 Aligned: 184 Modelled: 190 Confidence: 100.0% Identity: 21% PDB header:lyase Chain: B: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens Phyre2 PDB 3cne chain D Region: 2 - 172 Aligned: 166 Modelled: 169 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: D: PDB Molecule:putative protease i; PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron Phyre2 PDB 3fse chain B Region: 2 - 172 Aligned: 166 Modelled: 171 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution Phyre2 PDB 1g2i chain A Region: 3 - 172 Aligned: 165 Modelled: 165 Confidence: 100.0% Identity: 24% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3mgk chain A Region: 4 - 191 Aligned: 181 Modelled: 184 Confidence: 100.0% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:intracellular protease/amidase related enzyme PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824 Phyre2 PDB 3bhn chain A Region: 4 - 195 Aligned: 185 Modelled: 191 Confidence: 100.0% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:thij/pfpi domain protein; PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution Phyre2 PDB 3uk7 chain B Region: 2 - 174 Aligned: 170 Modelled: 165 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d Phyre2 PDB 1oi4 chain A domain 1 Region: 2 - 172 Aligned: 168 Modelled: 170 Confidence: 100.0% Identity: 22% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3gra chain A Region: 3 - 185 Aligned: 175 Modelled: 165 Confidence: 100.0% Identity: 18% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, arac family; PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida Phyre2 PDB 2vrn chain A Region: 2 - 181 Aligned: 175 Modelled: 180 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:protease i; PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily Phyre2 PDB 3er6 chain D Region: 4 - 185 Aligned: 177 Modelled: 178 Confidence: 100.0% Identity: 12% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus Phyre2 PDB 3efe chain C Region: 3 - 195 Aligned: 186 Modelled: 192 Confidence: 100.0% Identity: 20% PDB header:chaperone Chain: C: PDB Molecule:thij/pfpi family protein; PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis Phyre2 PDB 3f5d chain A Region: 3 - 196 Aligned: 183 Modelled: 193 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis Phyre2 PDB 2fex chain A domain 1 Region: 2 - 181 Aligned: 173 Modelled: 179 Confidence: 100.0% Identity: 22% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 1u9c chain A Region: 1 - 176 Aligned: 175 Modelled: 176 Confidence: 100.0% Identity: 24% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3kkl chain A Region: 3 - 174 Aligned: 170 Modelled: 171 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae Phyre2 1 d2ab0a1 2 c3ot1B_ 3 d1p5fa_ 4 c3ewnA_ 5 c3nooB_ 6 c3cneD_ 7 c3fseB_ 8 d1g2ia_ 9 c3mgkA_ 10 c3bhnA_ 11 c3uk7B_ 12 d1oi4a1 13 c3graA_ 14 c2vrnA_ 15 c3er6D_ 16 c3efeC_ 17 c3f5dA_ 18 d2fexa1 19 d1u9ca_ 20 c3kklA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ab0a1 100.0 100 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 2 c3ot1B_ 100.0 42 PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein 3 d1p5fa_ 100.0 39 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 4 c3ewnA_ 100.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae 5 c3nooB_ 100.0 21 PDB header:lyase Chain: B: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens 6 c3cneD_ 100.0 19 PDB header:hydrolase Chain: D: PDB Molecule:putative protease i; PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron 7 c3fseB_ 100.0 23 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 8 d1g2ia_ 100.0 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 9 c3mgkA_ 100.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:intracellular protease/amidase related enzyme PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824 10 c3bhnA_ 100.0 17 PDB header:unknown function Chain: A: PDB Molecule:thij/pfpi domain protein; PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution 11 c3uk7B_ 100.0 25 PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d 12 d1oi4a1 100.0 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 13 c3graA_ 100.0 18 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, arac family; PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida 14 c2vrnA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:protease i; PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily 15 c3er6D_ 100.0 12 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus 16 c3efeC_ 100.0 20 PDB header:chaperone Chain: C: PDB Molecule:thij/pfpi family protein; PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis 17 c3f5dA_ 100.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis 18 d2fexa1 100.0 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 19 d1u9ca_ 100.0 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 20 c3kklA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 21 d1sy7a1 not modelled 100.0 11 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 22 c1sy7B_ not modelled 100.0 11 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase 1; PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution. 23 d1qvwa_ not modelled 100.0 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 24 c3n7tA_ not modelled 100.0 20 PDB header:protein binding Chain: A: PDB Molecule:macrophage binding protein; PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis 25 d1vhqa_ not modelled 100.0 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 26 d1n57a_ not modelled 100.0 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 27 c3l3bA_ not modelled 99.9 20 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 28 d1p80a1 not modelled 99.9 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 29 c1p81A_ not modelled 99.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase hpii; PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli 30 d1t3ta2 not modelled 98.7 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 31 c3ej6D_ not modelled 98.4 19 PDB header:oxidoreductase Chain: D: PDB Molecule:catalase-3; PDBTitle: neurospora crassa catalase-3 crystal structure 32 c3d54D_ not modelled 98.3 18 PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima 33 d1q7ra_ not modelled 97.9 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 34 d2nv0a1 not modelled 97.9 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 35 c2iufA_ not modelled 97.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase; PDBTitle: the structures of penicillium vitale catalase: resting2 state, oxidised state (compound i) and complex with3 aminotriazole 36 c2issF_ not modelled 97.8 19 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 37 d1ka9h_ not modelled 97.7 26 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 38 d1o1ya_ not modelled 97.5 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 39 c3l7nA_ not modelled 97.4 19 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 40 c2ywjA_ not modelled 97.3 16 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 41 d1jvna2 not modelled 97.2 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 42 c1t3tA_ not modelled 97.1 17 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 43 d1gpma2 not modelled 96.8 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 44 c2ywdA_ not modelled 96.7 17 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of glutamine amidotransferase 45 d1k9vf_ not modelled 96.6 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 46 c3l83A_ not modelled 96.5 14 PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus 47 d2abwa1 not modelled 96.4 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 48 d1wl8a1 not modelled 96.4 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 49 c3r74B_ not modelled 96.4 20 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 50 c1keeH_ not modelled 96.1 18 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 51 d2a9va1 not modelled 95.9 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 52 d1a9xb2 not modelled 95.6 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 53 c3fijD_ not modelled 95.5 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 54 d1qdlb_ not modelled 95.3 9 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 55 d1i1qb_ not modelled 95.2 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 56 c1jvnB_ not modelled 94.6 14 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 57 d1i7qb_ not modelled 93.9 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 58 d1d4aa_ not modelled 93.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 59 c3l4eA_ not modelled 93.2 16 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 60 c2vpiA_ not modelled 93.1 14 PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain 61 c2ad5B_ not modelled 91.6 22 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 62 d1fyea_ not modelled 90.7 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 63 d1s1ma1 not modelled 90.7 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 64 c3nvaB_ not modelled 90.7 13 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 65 c2w7tA_ not modelled 90.4 15 PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin 66 d2ghra1 not modelled 89.2 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like 67 d1vcoa1 not modelled 89.2 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 68 c1vcnA_ not modelled 88.3 20 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 69 c3klbA_ not modelled 86.5 16 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 70 c3en0A_ not modelled 85.4 17 PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase 71 c2ywcC_ not modelled 85.0 25 PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp 72 c3uowB_ not modelled 84.5 21 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 73 c2ax3A_ not modelled 84.5 12 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 74 c3ragA_ not modelled 81.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein aaci_0196 from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446 75 d2a5la1 not modelled 80.0 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 76 d1dxqa_ not modelled 79.6 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 77 c2v4uA_ not modelled 79.3 15 PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine 78 d1vmea1 not modelled 79.1 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 79 c3okfA_ not modelled 78.2 14 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae 80 d1ycga1 not modelled 76.6 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 81 d1jeyb2 not modelled 76.2 12 Fold:vWA-like Superfamily:vWA-like Family:Ku80 subunit N-terminal domain 82 d1qrda_ not modelled 76.0 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 83 c3b6iB_ not modelled 75.6 19 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 84 c1gpmD_ not modelled 75.5 15 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 85 c2h2wA_ not modelled 75.2 19 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 86 c2dg2D_ not modelled 73.2 13 PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein 87 d2ax3a2 not modelled 69.2 12 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 88 c3ezxA_ not modelled 67.6 15 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 89 c3tqiB_ not modelled 67.0 20 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 90 c1y80A_ not modelled 63.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 91 d1e5da1 not modelled 61.8 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 92 d2qwxa1 not modelled 59.8 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 93 c3edoA_ not modelled 59.6 19 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 94 c2zkiH_ not modelled 56.2 18 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 95 c1l9xA_ not modelled 54.9 18 PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase 96 d1l9xa_ not modelled 54.9 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 97 d1ccwa_ not modelled 54.3 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 98 d3bula2 not modelled 53.4 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 99 c2vxoB_ not modelled 50.3 13 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp 100 d1iowa1 not modelled 50.1 29 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 101 c3d3kD_ not modelled 47.2 10 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 102 c3fniA_ not modelled 46.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 103 d1kwga3 not modelled 45.6 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:A4 beta-galactosidase middle domain 104 d1g5qa_ not modelled 45.3 17 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 105 d1fmfa_ not modelled 44.9 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 106 c2dlnA_ not modelled 39.4 23 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 107 c3d3jA_ not modelled 39.2 10 PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 108 c1bmtB_ not modelled 33.5 14 PDB header:methyltransferase Chain: B: PDB Molecule:methionine synthase; PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase 109 c2zktB_ not modelled 31.9 15 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 110 d1u0ta_ not modelled 31.5 23 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 111 c2i2xD_ not modelled 30.9 16 PDB header:transferase Chain: D: PDB Molecule:methyltransferase 1; PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri 112 c2r47C_ not modelled 27.7 26 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein mth_862; PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus 113 c3k1tA_ not modelled 26.8 14 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase gsha; PDBTitle: crystal structure of putative gamma-glutamylcysteine synthetase2 (yp_546622.1) from methylobacillus flagellatus kt at 1.90 a3 resolution 114 d1mkza_ not modelled 25.8 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 115 c3g05B_ not modelled 25.4 25 PDB header:rna binding protein Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg 116 d2h80a1 not modelled 24.3 33 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 117 d7reqa2 not modelled 23.8 9 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 118 c2iyaB_ not modelled 21.3 19 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0