Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	D	I	V	D	P	V	F	S	I	G	I	S	S	L	W	D	E	L	R	H	M	P	A	G	G	V	W	W	F	N	V	D	R	H	E	D	A	I	S	L	A	N	Q	T	I	A	S	Q	A	E	T	A	H	V	A	V	I	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?				?									?			?																											?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	D	S	D	P	A	K	I	F	Q	L	D	D	S	Q	G	P	E	K	I	K	L	F	S	M	L	N	H	E	K	G	L	Y	Y	L	T	R	D	L	Q	C	S	I	D	P	H	N	Y	L	F	I	L	V	C	A	N	N	A	W	Q
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?						?		?	?															?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	I	P	A	E	R	L	R	S	W	L	D	K	M	N	K	W	S	R	L	N	H	C	S	L	L	V	I	N	P	G	N	N	N	D	K	Q	F	S	L	L	L	E	E	Y	R	S	L	F	G	L	A	S	L	R	F	Q	G	D	Q
Secondary structure
SS confidence
Disorder																																?	?	?	?	?								?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		H	L	L	D	I	A	F	W	C	N	E	K	G	V	S	A	R	Q	Q	L	S	V	Q	Q	Q	N	G	I	W	T	L	V	Q	S	E	E	A	E	I	Q	P	R	S	D	E	K	R	I	L	S	N	V	A	V	L	E	G	A	P	P
Secondary structure
SS confidence
Disorder															?	?	?	?														?			?	?	?	?	?	?	?	?	?														?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	S	E	H	W	Q	L	F	N	N	N	E	V	L	F	N	E	A	R	T	A	Q	A	A	T	V	V	F	S	L	Q	Q	N	A	Q	I	E	P	L	A	R	S	I	H	T	L	R	R	Q	R	G	S	A	M	K	I	L	V	R	E
Secondary structure
SS confidence
Disorder																		?	?	?	?	?																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	T	A	S	L	R	A	T	D	E	R	L	L	L	A	C	G	A	N	M	V	I	P	W	N	A	P	L	S	R	C	L	T	M	I	E	S	V	Q	G	Q	K	F	S	R	Y	V	P	E	D	I	T	T	L	L	S	M	T	Q	P
Secondary structure
SS confidence
Disorder																								?	?		?												?	?																			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	K	L	R	G	F	Q	K	W	D	V	F	C	N	A	V	N	N	M	M	N	N	P	L	L	P	A	H	G	K	G	V	L	V	A	L	R	P	V	P	G	I	R	V	E	Q	A	L	T	L	C	R	P	N	R	T	G	D	I	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?																		?	?	?	?	?	?	?	?	?						?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		T	I	G	G	N	R	L	V	L	F	L	S	F	C	R	I	N	D	L	D	T	A	L	N	H	I	F	P	L	P	T	G	D	I	F	S	N	R	M	V	W	F	E	D	D	Q	I	S	A	E	L	V	Q	M	R	L	L	A	P	E
Secondary structure
SS confidence
Disorder																																																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Sequence		Q	W	G	M	P	L	P	L	T	Q	S	S	K	P	V	I	N	A	E	H	D	G	R	H	W	R	R	I	P	E	P	M	R	L	L	D	D	A	V	E	R	S	S
Secondary structure
SS confidence
Disorder		?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?						?	?		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ube chain A domain 1 Region: 8 - 150 Aligned: 140 Modelled: 140 Confidence: 95.0% Identity: 14% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 1mo6 chain A domain 1 Region: 8 - 150 Aligned: 141 Modelled: 143 Confidence: 94.8% Identity: 15% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 1u9i chain A Region: 9 - 208 Aligned: 199 Modelled: 200 Confidence: 94.0% Identity: 7% PDB header:circadian clock protein Chain: A: PDB Molecule:kaic; PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites Phyre2 PDB 1xp8 chain A domain 1 Region: 7 - 150 Aligned: 141 Modelled: 144 Confidence: 92.0% Identity: 16% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 1u94 chain A domain 1 Region: 9 - 160 Aligned: 150 Modelled: 152 Confidence: 91.7% Identity: 14% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 1tf7 chain A domain 2 Region: 6 - 209 Aligned: 204 Modelled: 204 Confidence: 88.7% Identity: 7% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 1n0w chain A Region: 9 - 151 Aligned: 142 Modelled: 136 Confidence: 85.4% Identity: 12% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 2zro chain A Region: 7 - 150 Aligned: 141 Modelled: 144 Confidence: 85.1% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:protein reca; PDBTitle: msreca adp form iv Phyre2 PDB 2cvh chain B Region: 8 - 208 Aligned: 200 Modelled: 201 Confidence: 84.3% Identity: 13% PDB header:dna binding protein Chain: B: PDB Molecule:dna repair and recombination protein radb; PDBTitle: crystal structure of the radb recombinase Phyre2 PDB 2rec chain B Region: 7 - 150 Aligned: 142 Modelled: 144 Confidence: 83.9% Identity: 15% PDB header:helicase PDB COMPND: Phyre2 PDB 1xp8 chain A Region: 7 - 150 Aligned: 141 Modelled: 144 Confidence: 79.3% Identity: 16% PDB header:dna binding protein Chain: A: PDB Molecule:reca protein; PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s" Phyre2 PDB 3hr8 chain A Region: 7 - 149 Aligned: 140 Modelled: 143 Confidence: 79.0% Identity: 12% PDB header:recombination Chain: A: PDB Molecule:protein reca; PDBTitle: crystal structure of thermotoga maritima reca Phyre2 PDB 3c85 chain A Region: 249 - 341 Aligned: 86 Modelled: 93 Confidence: 70.5% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:putative glutathione-regulated potassium-efflux system PDBTitle: crystal structure of trka domain of putative glutathione-regulated2 potassium-efflux kefb from vibrio parahaemolyticus Phyre2 PDB 1szp chain A domain 2 Region: 9 - 183 Aligned: 169 Modelled: 175 Confidence: 69.0% Identity: 11% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 7req chain A domain 2 Region: 243 - 342 Aligned: 97 Modelled: 97 Confidence: 59.2% Identity: 12% Fold: Flavodoxin-like Superfamily: Cobalamin (vitamin B12)-binding domain Family: Cobalamin (vitamin B12)-binding domain Phyre2 PDB 2zts chain B Region: 9 - 209 Aligned: 196 Modelled: 196 Confidence: 57.4% Identity: 11% PDB header:atp-binding protein Chain: B: PDB Molecule:putative uncharacterized protein ph0186; PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 Phyre2 PDB 2g1u chain A Region: 238 - 335 Aligned: 91 Modelled: 98 Confidence: 53.3% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution Phyre2 PDB 1tf7 chain A domain 1 Region: 9 - 216 Aligned: 208 Modelled: 208 Confidence: 52.0% Identity: 9% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 3fwz chain A Region: 250 - 337 Aligned: 80 Modelled: 88 Confidence: 45.9% Identity: 18% PDB header:membrane protein Chain: A: PDB Molecule:inner membrane protein ybal; PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli Phyre2 PDB 2q6t chain B Region: 6 - 150 Aligned: 145 Modelled: 145 Confidence: 42.8% Identity: 9% PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer Phyre2 1 d1ubea1 2 d1mo6a1 3 c1u9iA_ 4 d1xp8a1 5 d1u94a1 6 d1tf7a2 7 d1n0wa_ 8 c2zroA_ 9 c2cvhB_ 10 c2recB_ 11 c1xp8A_ 12 c3hr8A_ 13 c3c85A_ 14 d1szpa2 15 d7reqa2 16 c2ztsB_ 17 c2g1uA_ 18 d1tf7a1 19 c3fwzA_ 20 c2q6tB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ubea1 95.0 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 2 d1mo6a1 94.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 3 c1u9iA_ 94.0 7 PDB header:circadian clock protein Chain: A: PDB Molecule:kaic; PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites 4 d1xp8a1 92.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 5 d1u94a1 91.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 6 d1tf7a2 88.7 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 7 d1n0wa_ 85.4 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 8 c2zroA_ 85.1 13 PDB header:hydrolase Chain: A: PDB Molecule:protein reca; PDBTitle: msreca adp form iv 9 c2cvhB_ 84.3 13 PDB header:dna binding protein Chain: B: PDB Molecule:dna repair and recombination protein radb; PDBTitle: crystal structure of the radb recombinase 10 c2recB_ 83.9 15 PDB header:helicase PDB COMPND: 11 c1xp8A_ 79.3 16 PDB header:dna binding protein Chain: A: PDB Molecule:reca protein; PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s" 12 c3hr8A_ 79.0 12 PDB header:recombination Chain: A: PDB Molecule:protein reca; PDBTitle: crystal structure of thermotoga maritima reca 13 c3c85A_ 70.5 12 PDB header:transport protein Chain: A: PDB Molecule:putative glutathione-regulated potassium-efflux system PDBTitle: crystal structure of trka domain of putative glutathione-regulated2 potassium-efflux kefb from vibrio parahaemolyticus 14 d1szpa2 69.0 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 15 d7reqa2 59.2 12 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 16 c2ztsB_ 57.4 11 PDB header:atp-binding protein Chain: B: PDB Molecule:putative uncharacterized protein ph0186; PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 17 c2g1uA_ 53.3 12 PDB header:transport protein Chain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution 18 d1tf7a1 52.0 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 19 c3fwzA_ 45.9 18 PDB header:membrane protein Chain: A: PDB Molecule:inner membrane protein ybal; PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli 20 c2q6tB_ 42.8 9 PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer 21 d1id1a_ not modelled 40.8 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain 22 d2i1qa2 not modelled 35.9 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 23 d1fmfa_ not modelled 34.1 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 24 c1szpC_ not modelled 33.0 13 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein rad51; PDBTitle: a crystal structure of the rad51 filament 25 d1b74a1 not modelled 33.0 7 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 26 d3bula2 not modelled 29.9 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 27 c3eywA_ not modelled 28.6 13 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 28 c1y80A_ not modelled 27.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 29 c2w0mA_ not modelled 23.7 8 PDB header:unknown function Chain: A: PDB Molecule:sso2452; PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2 30 d1lssa_ not modelled 22.7 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain 31 c3mjsA_ not modelled 22.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:amphb; PDBTitle: structure of a-type ketoreductases from modular polyketide synthase 32 c3cq0B_ not modelled 20.7 19 PDB header:transferase Chain: B: PDB Molecule:putative transaldolase ygr043c; PDBTitle: crystal structure of tal2_yeast 33 c2dflA_ not modelled 19.1 15 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: crystal structure of left-handed rada filament 34 c3qatB_ not modelled 19.0 17 PDB header:transferase Chain: B: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of acyl-carrier-protein-s-malonyltransferase from2 bartonella henselae 35 c2zjbB_ not modelled 18.3 13 PDB header:recombination Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog; PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant 36 c2xoaA_ not modelled 16.7 16 PDB header:metal transport Chain: A: PDB Molecule:ryanodine receptor 1; PDBTitle: crystal structure of the n-terminal three domains of the2 skeletal muscle ryanodine receptor (ryr1) 37 d1skyb3 not modelled 15.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 38 c3s93B_ not modelled 15.4 12 PDB header:transcription Chain: B: PDB Molecule:tudor domain-containing protein 5; PDBTitle: crystal structure of conserved motif in tdrd5 39 d1oaia_ not modelled 15.3 26 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 40 c3bh0A_ not modelled 15.2 9 PDB header:replication Chain: A: PDB Molecule:dnab-like replicative helicase; PDBTitle: atpase domain of g40p 41 d1go5a_ not modelled 15.1 26 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 42 c1yqtA_ not modelled 14.8 10 PDB header:hydrolyase/translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: rnase-l inhibitor 43 d1ccwa_ not modelled 14.3 12 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 44 c2vyeA_ not modelled 13.5 6 PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex 45 c1yodB_ not modelled 13.0 30 PDB header:de novo protein Chain: B: PDB Molecule:water-solublized phospholamban; PDBTitle: crystal structure of a water soluble analog of phospholamban 46 c2iy3A_ not modelled 12.8 16 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 47 d3dhwc1 not modelled 12.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 48 c3io5B_ not modelled 12.4 10 PDB header:dna binding protein Chain: B: PDB Molecule:recombination and repair protein; PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4 49 c1yodA_ not modelled 12.1 30 PDB header:de novo protein Chain: A: PDB Molecule:water-solublized phospholamban; PDBTitle: crystal structure of a water soluble analog of phospholamban 50 d3e9la1 not modelled 12.0 50 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Prp8 beta-finger domain-like 51 d3e9oa1 not modelled 11.9 31 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Prp8 beta-finger domain-like 52 c2yhsA_ not modelled 11.5 15 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the e. coli srp receptor ftsy 53 d1t6sa1 not modelled 11.5 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ScpB/YpuH-like 54 d2g1la1 not modelled 10.7 25 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 55 c3e66B_ not modelled 10.6 31 PDB header:splicing Chain: B: PDB Molecule:prp8; PDBTitle: crystal structure of the beta-finger domain of yeast prp8 56 c3f6cB_ not modelled 10.4 9 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 57 c1vciA_ not modelled 10.4 8 PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp 58 c2j37W_ not modelled 10.4 7 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 59 d1nlfa_ not modelled 10.3 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 60 d2b4aa1 not modelled 10.2 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 61 c3dm5A_ not modelled 10.2 14 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 62 d1oi7a1 not modelled 10.1 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 63 c2it1B_ not modelled 9.9 6 PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii 64 c1oxtB_ not modelled 9.8 18 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus 65 d2fy8a1 not modelled 9.8 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain 66 c3r1fO_ not modelled 9.7 17 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 67 c2qy9A_ not modelled 9.7 14 PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy 68 c1wr4A_ not modelled 9.7 29 PDB header:ligase Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2; PDBTitle: solution structure of the second ww domain of nedd4-2 69 d1vpra1 not modelled 9.7 38 Fold:Lipocalins Superfamily:Lipocalins Family:Dinoflagellate luciferase repeat 70 d1np7a2 not modelled 9.7 13 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 71 c2d62A_ not modelled 9.5 10 PDB header:sugar binding protein Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein 72 c3pfmA_ not modelled 9.4 40 PDB header:signaling protein Chain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf 73 d1v5wa_ not modelled 9.2 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 74 c1xnlA_ not modelled 9.2 42 PDB header:viral protein Chain: A: PDB Molecule:membrane protein gp37; PDBTitle: aslv fusion peptide 75 c3t8yA_ not modelled 9.2 11 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 76 c3eulB_ not modelled 9.1 17 PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis 77 d1jbea_ not modelled 9.0 23 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 78 c3ldaA_ not modelled 9.0 13 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: yeast rad51 h352y filament interface mutant 79 c2jp7A_ not modelled 8.9 10 PDB header:translation Chain: A: PDB Molecule:mrna export factor mex67; PDBTitle: nmr structure of the mex67 uba domain 80 c1vp7D_ not modelled 8.8 21 PDB header:hydrolase Chain: D: PDB Molecule:exodeoxyribonuclease vii small subunit; PDBTitle: crystal structure of exodeoxyribonuclease vii small subunit2 (np_881400.1) from bordetella pertussis at 2.40 a resolution 81 d1owla2 not modelled 8.5 20 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 82 c1m7lA_ not modelled 8.4 27 PDB header:sugar binding protein Chain: A: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: solution structure of the coiled-coil trimerization domain2 from lung surfactant protein d 83 c2r8rB_ not modelled 8.2 33 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000 84 c1t4gA_ not modelled 8.2 16 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: atpase in complex with amp-pnp 85 d1fx0a3 not modelled 8.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 86 c3hv9A_ not modelled 8.1 15 PDB header:hydrolase Chain: A: PDB Molecule:protein fimx; PDBTitle: crystal structure of fimx eal domain from pseudomonas aeruginosa 87 c3pihA_ not modelled 8.0 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 88 c2knjA_ not modelled 7.9 33 PDB header:antimicrobial protein Chain: A: PDB Molecule:microplusin preprotein; PDBTitle: nmr structure of microplusin a antimicrobial peptide from2 rhipicephalus (boophilus) microplus 89 c1y7pB_ not modelled 7.8 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator 90 c2lf3A_ not modelled 7.8 29 PDB header:signaling protein Chain: A: PDB Molecule:effector protein hopab3; PDBTitle: solution nmr structure of hoppmal_281_385 from pseudomonas syringae2 pv. maculicola str. es4326, midwest center for structural genomics3 target apc40104.5 and northeast structural genomics consortium target4 pst2a 91 c1skyE_ not modelled 7.7 17 PDB header:atp synthase Chain: E: PDB Molecule:f1-atpase; PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3 92 c1qzwC_ not modelled 7.7 13 PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication 93 d1a8oa_ not modelled 7.6 18 Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain 94 c2nq2C_ not modelled 7.5 10 PDB header:metal transport Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter. 95 d1p6qa_ not modelled 7.5 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 96 d1qrjb1 not modelled 7.3 22 Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:Retrovirus capsid protein C-terminal domain 97 d1tu1a_ not modelled 7.2 18 Fold:Mog1p/PsbP-like Superfamily:Mog1p/PsbP-like Family:PA0094-like 98 d2veaa2 not modelled 7.2 10 Fold:Profilin-like Superfamily:GAF domain-like Family:Phytochrome-specific domain 99 c3d31B_ not modelled 7.2 12 PDB header:transport protein Chain: B: PDB Molecule:sulfate/molybdate abc transporter, atp-binding PDBTitle: modbc from methanosarcina acetivorans

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0