PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3pfmA_

Fold library id	PDB Header	Molecule	Title
c3pfmA_	PDB header: signaling protein	Chain: A: PDB Molecule: ggdef domain protein;	PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf

Links to external resources
Added to library: Sat Nov 20 09:57:48 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S N A D H H A W H R L L D R A L S E Q H F Q L Y F Q P V V A A R D T H L V L H Y K V L S R L L D E Q G Q T I P A G R F L P W L E R F G W T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
T T S
T T S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R L D L L X L E Q V L R Q X A S H E D C L A L N L S A A T L A D P H A L N R V F E I L R Q H S D L G P R L T L E I G E E Q L P E Q A X L E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T G G G T T T S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L T R R L R E L G F S L S L Q R F G G R F S X I G N L A R L G L A Y L K I D G S Y I R D I D Q E S D K R L F I E A I Q R A A H S I D L P L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T G G G G G G T
S
G G G G T T T T T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . .

Sequence A E R V E T E G E L Q V I R E X G L Y G V Q G Q L F G E P A P W G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
S
S G G G
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	N	A	D	H	H	A	W	H	R	L	L	D	R	A	L	S	E	Q	H	F	Q	L	Y	F	Q	P	V	V	A	A	R	D	T	H	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I	P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T												S	S		T	T	S													T	T	S																T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	L	D	L	L	X	L	E	Q	V	L	R	Q	X	A	S	H	E	D	C	L	A	L	N	L	S	A	A	T	L	A	D	P	H	A	L	N	R	V	F	E	I	L	R	Q	H	S	D	L	G	P	R	L	T	L	E	I	G	E	E	Q	L	P	E	Q	A	X	L	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														G	G	G																														T	G	G	G	T	T	T							S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	X	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	D	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T									T	T	T	G	G	G	G	G	G					T		S						G	G	G	G	T	T	T	T	T		T																T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Sequence	A	E	R	V	E	T	E	G	E	L	Q	V	I	R	E	X	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	A	P	W	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S											T		S				S	G	G	G					S