Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP15877
DateThu Jan 5 11:34:57 GMT 2012
Unique Job ID45f667485f99845a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1kb0A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni
Confidence and coverage
Confidence:100.0% Coverage: 66%
523 residues ( 66% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAINNTGSRRLLVTLTALFAALCGLYLLIGGGWLVAIGGSWYYPIAGLVMLGVAWMLWRS
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Disorder  ???????????












































????
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   .........70.........80.........90.........100.........110.........120
Sequence  KRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWRRLVIPASGA
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Disorder 
???


























?
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   .........130.........140.........150.........160.........170.........180
Sequence  VAALVVALLISGGILTWAGFNDPQEINGTLSADATPAEAISPVADQDWPAYGRNQEGQRF
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?
????????????????????
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   .........190.........200.........210.........220.........230.........240
Sequence  SPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD
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??













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   .........250.........260.........270.........280.........290.........300
Sequence  AASGKEKWHYDPELKTNESFQHVTCRGVSYHEAKAETASPEVMADCPRRIILPVNDGRLI
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   .........310.........320.........330.........340.........350.........360
Sequence  AINAENGKLCETFANKGVLNLQSNMPDTKPGLYEPTSPPIITDKTIVMAGSVTDNFSTRE
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   .........370.........380.........390.........400.........410.........420
Sequence  TSGVIRGFDVNTGELLWAFDPGAKDPNAIPSDEHTFTFNSPNSWAPAAYDAKLDLVYLPM
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   .........430.........440.........450.........460.........470.........480
Sequence  GVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV
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?
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   .........490.........500.........510.........520.........530.........540
Sequence  NGQKVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVTPTQPFSELSFRPT
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??????
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   .........550.........560.........570.........580.........590.........600
Sequence  KDLSGADMWGATMFDQLVCRVMFHQMRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPN
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   .........610.........620.........630.........640.........650.........660
Sequence  REVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPF
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   .........670.........680.........690.........700.........710.........720
Sequence  GLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAG
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?
?
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   .........730.........740.........750.........760.........770.........780
Sequence  NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGT
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?
???




















?
?

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   .........790......
Sequence  KMGDYIVAYALPDDVK
Secondary structure 









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????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1kb0 chain A

3D model

Region: 160 - 796
Aligned: 523
Modelled: 540
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni

Phyre2

PDB 1yiq chain A

3D model

Region: 160 - 791
Aligned: 524
Modelled: 554
Confidence: 100.0%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism.

Phyre2

PDB 1kv9 chain A

3D model

Region: 159 - 796
Aligned: 519
Modelled: 539
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase;
PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5

Phyre2

PDB 1kb0 chain A domain 2

3D model

Region: 161 - 796
Aligned: 523
Modelled: 539
Confidence: 100.0%
Identity: 29%
Fold: 8-bladed beta-propeller
Superfamily: Quinoprotein alcohol dehydrogenase-like
Family: Quinoprotein alcohol dehydrogenase-like

Phyre2

PDB 1flg chain A

3D model

Region: 160 - 793
Aligned: 525
Modelled: 526
Confidence: 100.0%
Identity: 25%
Fold: 8-bladed beta-propeller
Superfamily: Quinoprotein alcohol dehydrogenase-like
Family: Quinoprotein alcohol dehydrogenase-like

Phyre2

PDB 2ad6 chain A domain 1

3D model

Region: 163 - 791
Aligned: 512
Modelled: 519
Confidence: 100.0%
Identity: 30%
Fold: 8-bladed beta-propeller
Superfamily: Quinoprotein alcohol dehydrogenase-like
Family: Quinoprotein alcohol dehydrogenase-like

Phyre2

PDB 1w6s chain A

3D model

Region: 161 - 791
Aligned: 522
Modelled: 547
Confidence: 100.0%
Identity: 28%
Fold: 8-bladed beta-propeller
Superfamily: Quinoprotein alcohol dehydrogenase-like
Family: Quinoprotein alcohol dehydrogenase-like

Phyre2

PDB 1kv9 chain A domain 2

3D model

Region: 160 - 796
Aligned: 521
Modelled: 537
Confidence: 100.0%
Identity: 31%
Fold: 8-bladed beta-propeller
Superfamily: Quinoprotein alcohol dehydrogenase-like
Family: Quinoprotein alcohol dehydrogenase-like

Phyre2

PDB 1lrw chain A

3D model

Region: 159 - 791
Aligned: 524
Modelled: 561
Confidence: 100.0%
Identity: 28%
Fold: 8-bladed beta-propeller
Superfamily: Quinoprotein alcohol dehydrogenase-like
Family: Quinoprotein alcohol dehydrogenase-like

Phyre2

PDB 2be1 chain A

3D model

Region: 223 - 534
Aligned: 263
Modelled: 285
Confidence: 100.0%
Identity: 19%
PDB header:transcription
Chain: A: PDB Molecule:serine/threonine-protein kinase/endoribonuclease ire1;
PDBTitle: structure of the compact lumenal domain of yeast ire1

Phyre2

PDB 3p1l chain A

3D model

Region: 181 - 790
Aligned: 358
Modelled: 382
Confidence: 100.0%
Identity: 20%
PDB header:protein binding
Chain: A: PDB Molecule:lipoprotein yfgl;
PDBTitle: crystal structure of escherichia coli bamb, a lipoprotein component of2 the beta-barrel assembly machinery complex, native crystals.

Phyre2

PDB 2hz6 chain A

3D model

Region: 224 - 459
Aligned: 156
Modelled: 163
Confidence: 99.8%
Identity: 20%
PDB header:signaling protein
Chain: A: PDB Molecule:endoplasmic reticulum to nucleus signalling 1
PDBTitle: the crystal structure of human ire1-alpha luminal domain

Phyre2

PDB 3no2 chain A

3D model

Region: 224 - 515
Aligned: 242
Modelled: 255
Confidence: 99.6%
Identity: 12%
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein of unknown function (baccac_01654) from2 bacteroides caccae at 1.35 a resolution

Phyre2

PDB 3hxj chain A

3D model

Region: 207 - 736
Aligned: 303
Modelled: 331
Confidence: 99.6%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrrolo-quinoline quinone;
PDBTitle: crystal structure of pyrrolo-quinoline quinone (pqq_dh) from2 methanococcus maripaludis, northeast structural genomics consortium3 target mrr86

Phyre2

PDB 2j57 chain J

3D model

Region: 281 - 759
Aligned: 333
Modelled: 337
Confidence: 99.2%
Identity: 16%
PDB header:oxidoreductase
Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain;
PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin.

Phyre2

PDB 1jmx chain B

3D model

Region: 281 - 756
Aligned: 330
Modelled: 384
Confidence: 99.2%
Identity: 18%
Fold: 7-bladed beta-propeller
Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
Family: Quinohemoprotein amine dehydrogenase B chain

Phyre2

PDB 2mad chain H

3D model

Region: 275 - 755
Aligned: 331
Modelled: 331
Confidence: 99.2%
Identity: 11%
Fold: 7-bladed beta-propeller
Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
Family: Methylamine dehydrogenase, H-chain

Phyre2

PDB 1nno chain A

3D model

Region: 226 - 750
Aligned: 363
Modelled: 390
Confidence: 99.2%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa

Phyre2

PDB 1pby chain B

3D model

Region: 225 - 754
Aligned: 309
Modelled: 318
Confidence: 99.1%
Identity: 17%
Fold: 7-bladed beta-propeller
Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
Family: Quinohemoprotein amine dehydrogenase B chain

Phyre2

PDB 3mbr chain X

3D model

Region: 190 - 422
Aligned: 174
Modelled: 209
Confidence: 99.1%
Identity: 14%
PDB header:transferase
Chain: X: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris

Phyre2
1

c1kb0A_
2

c1yiqA_
3

c1kv9A_
4

d1kb0a2
5

d1flga_
6

d2ad6a1
7

d1w6sa_
8

d1kv9a2
9

d1lrwa_
10

c2be1A_
11

c3p1lA_
12

c2hz6A_
13

c3no2A_
14

c3hxjA_
15

c2j57J_
16

d1jmxb_
17

d2madh_
18

c1nnoA_
19

d1pbyb_
20

c3mbrX_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1kb0A_



100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni
2c1yiqA_



100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism.
3c1kv9A_



100.0 32 PDB header:oxidoreductase
Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase;
PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5
4d1kb0a2



100.0 29 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
5d1flga_



100.0 25 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
6d2ad6a1



100.0 30 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
7d1w6sa_



100.0 28 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
8d1kv9a2



100.0 31 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
9d1lrwa_



100.0 28 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
10c2be1A_



100.0 19 PDB header:transcription
Chain: A: PDB Molecule:serine/threonine-protein kinase/endoribonuclease ire1;
PDBTitle: structure of the compact lumenal domain of yeast ire1
11c3p1lA_



100.0 20 PDB header:protein binding
Chain: A: PDB Molecule:lipoprotein yfgl;
PDBTitle: crystal structure of escherichia coli bamb, a lipoprotein component of2 the beta-barrel assembly machinery complex, native crystals.
12c2hz6A_



99.8 20 PDB header:signaling protein
Chain: A: PDB Molecule:endoplasmic reticulum to nucleus signalling 1
PDBTitle: the crystal structure of human ire1-alpha luminal domain
13c3no2A_



99.6 12 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein of unknown function (baccac_01654) from2 bacteroides caccae at 1.35 a resolution
14c3hxjA_



99.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrrolo-quinoline quinone;
PDBTitle: crystal structure of pyrrolo-quinoline quinone (pqq_dh) from2 methanococcus maripaludis, northeast structural genomics consortium3 target mrr86
15c2j57J_



99.2 16 PDB header:oxidoreductase
Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain;
PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin.
16d1jmxb_



99.2 18 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Quinohemoprotein amine dehydrogenase B chain
17d2madh_



99.2 11 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
18c1nnoA_



99.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa
19d1pbyb_



99.1 17 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Quinohemoprotein amine dehydrogenase B chain
20c3mbrX_



99.1 14 PDB header:transferase
Chain: X: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris
21c1gq1B_



not modelled 99.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase;
PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form
22c3nolA_



not modelled 99.0 15 PDB header:transferase
Chain: A: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of zymomonas mobilis glutaminyl cyclase (trigonal2 form)
23c3hx6A_



not modelled 99.0 20 PDB header:cell adhesion
Chain: A: PDB Molecule:type 4 fimbrial biogenesis protein pily1;
PDBTitle: crystal structure of pseudomonas aeruginosa pily1 c-terminal2 domain
24c3vh0C_



not modelled 98.9 15 PDB header:protein binding/dna
Chain: C: PDB Molecule:uncharacterized protein ynce;
PDBTitle: crystal structure of e. coli ynce complexed with dna
25c3c75J_



not modelled 98.7 15 PDB header:oxidoreductase
Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain;
PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin
26d2bbkh_



not modelled 98.7 15 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
27c2h47F_



not modelled 98.6 14 PDB header:oxidoreductase/electron transport
Chain: F: PDB Molecule:aromatic amine dehydrogenase;
PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
28c1l0qC_



not modelled 98.6 19 PDB header:protein binding
Chain: C: PDB Molecule:surface layer protein;
PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein
29c3u4yA_



not modelled 98.5 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771.
30c3nokB_



not modelled 98.5 14 PDB header:transferase
Chain: B: PDB Molecule:glutaminyl cyclase;
PDBTitle: crystal structure of myxococcus xanthus glutaminyl cyclase
31c3dsmA_



not modelled 98.2 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bacuni_02894;
PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d.
32c2iwaA_



not modelled 98.0 15 PDB header:transferase
Chain: A: PDB Molecule:glutamine cyclotransferase;
PDBTitle: unbound glutaminyl cyclotransferase from carica papaya.
33c2i0tB_



not modelled 98.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:aromatic amine dehydrogenase;
PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase
34d1l0qa2



not modelled 98.0 18 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:YVTN repeat
35d1qksa2



not modelled 97.9 12 Fold:8-bladed beta-propeller
Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
36d1nira2



not modelled 97.8 13 Fold:8-bladed beta-propeller
Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
37d1fwxa2



not modelled 97.7 18 Fold:7-bladed beta-propeller
Superfamily:Nitrous oxide reductase, N-terminal domain
Family:Nitrous oxide reductase, N-terminal domain
38c1fwxB_



not modelled 97.7 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrous oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans
39c3bwsA_



not modelled 97.6 17 PDB header:unknown function
Chain: A: PDB Molecule:protein lp49;
PDBTitle: crystal structure of the leptospiral antigen lp49
40c3elqA_



not modelled 97.5 19 PDB header:transferase
Chain: A: PDB Molecule:arylsulfate sulfotransferase;
PDBTitle: crystal structure of a bacterial arylsulfate2 sulfotransferase
41c1qniE_



not modelled 97.1 13 PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrous-oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution
42c3fgbB_



not modelled 96.7 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn;
PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b.
43d1pjxa_



not modelled 96.6 11 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
44c2w18A_



not modelled 96.1 11 PDB header:nuclear protein
Chain: A: PDB Molecule:partner and localizer of brca2;
PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2
45c2fp8A_



not modelled 95.5 15 PDB header:lyase
Chain: A: PDB Molecule:strictosidine synthase;
PDBTitle: structure of strictosidine synthase, the biosynthetic entry to the2 monoterpenoid indole alkaloid family
46c3g4hB_



not modelled 94.9 12 PDB header:hydrolase
Chain: B: PDB Molecule:regucalcin;
PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound)
47c3hfqB_



not modelled 94.4 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein lp_2219;
PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118.
48c3dm0A_



not modelled 94.2 14 PDB header:sugar binding protein,signaling protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with
PDBTitle: maltose binding protein fusion with rack1 from a. thaliana
49c2oajA_



not modelled 93.4 11 PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:protein sni1;
PDBTitle: crystal structure of sro7 from s. cerevisiae
50d2ghsa1



not modelled 92.7 15 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
51c2ghsA_



not modelled 92.7 15 PDB header:calcium-binding protein
Chain: A: PDB Molecule:agr_c_1268p;
PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution
52c2zuxA_



not modelled 92.2 13 PDB header:lyase
Chain: A: PDB Molecule:yesw protein;
PDBTitle: crystal structure of rhamnogalacturonan lyase yesw2 complexed with rhamnose
53c3dr2A_



not modelled 92.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:exported gluconolactonase;
PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways
54c3sbrF_



not modelled 90.8 16 PDB header:oxidoreductase
Chain: F: PDB Molecule:nitrous-oxide reductase;
PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate
55c3fw0A_



not modelled 90.7 15 PDB header:lyase
Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase;
PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate)
56c3mmyE_



not modelled 90.2 13 PDB header:nuclear protein
Chain: E: PDB Molecule:mrna export factor;
PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1
57c1n7dA_



not modelled 90.2 19 PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor
58d1nr0a1



not modelled 90.1 16 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
59d1yfqa_



not modelled 89.6 10 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:Cell cycle arrest protein BUB3
60d1k32a2



not modelled 87.9 11 Fold:6-bladed beta-propeller
Superfamily:Tricorn protease N-terminal domain
Family:Tricorn protease N-terminal domain
61d1mdah_



not modelled 87.0 13 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
62c2wg3C_



not modelled 85.5 11 PDB header:signaling protein
Chain: C: PDB Molecule:hedgehog-interacting protein;
PDBTitle: crystal structure of the complex between human hedgehog-2 interacting protein hip and desert hedgehog without calcium
63c3iytG_



not modelled 83.2 12 PDB header:apoptosis
Chain: G: PDB Molecule:apoptotic protease-activating factor 1;
PDBTitle: structure of an apoptosome-procaspase-9 card complex
64d2p4oa1



not modelled 82.6 11 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:All0351-like
65c3s25A_



not modelled 79.9 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical 7-bladed beta-propeller-like protein;
PDBTitle: crystal structure of a hypothetical 7-bladed beta-propeller-like2 protein (eubrec_1955) from eubacterium rectale atcc 33656 at 1.88 a3 resolution
66c3c5mC_



not modelled 79.3 8 PDB header:lyase
Chain: C: PDB Molecule:oligogalacturonate lyase;
PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199
67c3ei4D_



not modelled 78.7 12 PDB header:dna binding protein
Chain: D: PDB Molecule:dna damage-binding protein 2;
PDBTitle: structure of the hsddb1-hsddb2 complex
68d1qnia2



not modelled 72.9 11 Fold:7-bladed beta-propeller
Superfamily:Nitrous oxide reductase, N-terminal domain
Family:Nitrous oxide reductase, N-terminal domain
69d2dg1a1



not modelled 71.8 16 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
70d1jofa_



not modelled 71.3 13 Fold:7-bladed beta-propeller
Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme
Family:3-carboxy-cis,cis-mucoante lactonizing enzyme
71d1s1da_



not modelled 70.0 15 Fold:5-bladed beta-propeller
Superfamily:Apyrase
Family:Apyrase
72d1npea_



not modelled 69.1 15 Fold:6-bladed beta-propeller
Superfamily:YWTD domain
Family:YWTD domain
73c3npeA_



not modelled 67.7 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic;
PDBTitle: structure of vp14 in complex with oxygen
74c2uvkB_



not modelled 67.4 16 PDB header:unknown function
Chain: B: PDB Molecule:yjht;
PDBTitle: structure of yjht
75c3s94A_



not modelled 66.8 12 PDB header:signaling protein
Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6;
PDBTitle: crystal structure of lrp6-e1e2
76d2bgra1



not modelled 65.1 12 Fold:8-bladed beta-propeller
Superfamily:DPP6 N-terminal domain-like
Family:DPP6 N-terminal domain-like
77c3pe7A_



not modelled 64.3 8 PDB header:lyase
Chain: A: PDB Molecule:oligogalacturonate lyase;
PDBTitle: oligogalacturonate lyase in complex with manganese
78c3qqzA_



not modelled 62.8 10 PDB header:metal binding protein
Chain: A: PDB Molecule:putative uncharacterized protein yjik;
PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073
79c3lrvA_



not modelled 57.9 11 PDB header:splicing
Chain: A: PDB Molecule:pre-mrna-splicing factor 19;
PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function.
80c2ifsA_



not modelled 54.9 33 PDB header:signaling protein
Chain: A: PDB Molecule:wiskott-aldrich syndrome protien ineracting
PDBTitle: structure of the n-wasp evh1 domain in complex with an2 extended wip peptide
81c2vz1A_



not modelled 54.3 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:galactose oxidase;
PDBTitle: premat-galactose oxidase
82d1gxra_



not modelled 54.3 20 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
83c2g8sB_



not modelled 52.1 13 PDB header:sugar binding protein
Chain: B: PDB Molecule:glucose/sorbosone dehydrogenases;
PDBTitle: crystal structure of the soluble aldose sugar dehydrogenase2 (asd) from escherichia coli in the apo-form
84c3q6kA_



not modelled 50.9 22 PDB header:protein binding
Chain: A: PDB Molecule:43.2 kda salivary protein;
PDBTitle: salivary protein from lutzomyia longipalpis
85c1c9lA_



not modelled 49.7 17 PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:clathrin;
PDBTitle: peptide-in-groove interactions link target proteins to the2 b-propeller of clathrin
86d1ijqa1



not modelled 49.0 16 Fold:6-bladed beta-propeller
Superfamily:YWTD domain
Family:YWTD domain
87d1nlna_



not modelled 46.0 13 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
88c2pbiB_



not modelled 45.6 17 PDB header:signaling protein
Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta 5;
PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure
89d1utca2



not modelled 44.3 27 Fold:7-bladed beta-propeller
Superfamily:Clathrin heavy-chain terminal domain
Family:Clathrin heavy-chain terminal domain
90d1ri6a_



not modelled 42.5 15 Fold:7-bladed beta-propeller
Superfamily:Putative isomerase YbhE
Family:Putative isomerase YbhE
91c2xtsD_



not modelled 42.4 24 PDB header:oxidoreductase/electron transport
Chain: D: PDB Molecule:cytochrome;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
92c2iwkB_



not modelled 42.1 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrous oxide reductase;
PDBTitle: inhibitor-bound form of nitrous oxide reductase from2 achromobacter cycloclastes at 1.7 angstrom resolution
93d1kshb_



not modelled 41.7 42 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
94d2r6gf1



not modelled 39.8 20 Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
95c3e5zA_



not modelled 39.5 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.
96c1bpoA_



not modelled 36.4 17 PDB header:membrane protein
Chain: A: PDB Molecule:protein (clathrin);
PDBTitle: clathrin heavy-chain terminal domain and linker
97c1ijqA_



not modelled 35.9 18 PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: crystal structure of the ldl receptor ywtd-egf domain pair
98c2oitA_



not modelled 35.9 12 PDB header:oncoprotein
Chain: A: PDB Molecule:nucleoporin 214kda;
PDBTitle: crystal structure of the n-terminal domain of the human2 proto-oncogene nup214/can
99d1orva1



not modelled 35.8 12 Fold:8-bladed beta-propeller
Superfamily:DPP6 N-terminal domain-like
Family:DPP6 N-terminal domain-like
100c1xi4D_



not modelled 35.6 21 PDB header:endocytosis/exocytosis
Chain: D: PDB Molecule:clathrin heavy chain;
PDBTitle: clathrin d6 coat
101d1h6la_



not modelled 34.3 24 Fold:6-bladed beta-propeller
Superfamily:Thermostable phytase (3-phytase)
Family:Thermostable phytase (3-phytase)
102c2biwC_



not modelled 32.5 11 PDB header:oxidoreductase
Chain: C: PDB Molecule:apocarotenoid-cleaving oxygenase;
PDBTitle: crystal structure of apocarotenoid cleavage oxygenase from2 synechocystis, native enzyme
103c3tekA_



not modelled 32.1 32 PDB header:dna binding protein
Chain: A: PDB Molecule:thermodbp-single stranded dna binding protein;
PDBTitle: thermodbp: a non-canonical single-stranded dna binding protein with a2 novel structure and mechanism
104d1es5a_



not modelled 32.0 8 Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
105d1tbga_



not modelled 31.9 9 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
106c2v20A_



not modelled 31.7 28 PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase tem;
PDBTitle: structure of a tem-1 beta-lactamase insertant2 allosterically regulated by kanamycin and anions. complex3 with sulfate.
107d1mkea1



not modelled 31.4 33 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
108d1g2914



not modelled 31.3 16 Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
109c2qe8B_



not modelled 31.0 14 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative hydrolase (ava_4197) from anabaena2 variabilis atcc 29413 at 1.35 a resolution
110d1qfma1



not modelled 30.7 13 Fold:7-bladed beta-propeller
Superfamily:Peptidase/esterase 'gauge' domain
Family:Prolyl oligopeptidase, N-terminal domain
111d1pgua1



not modelled 28.9 12 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
112d1y9qa2



not modelled 28.1 16 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Probable transcriptional regulator VC1968, C-terminal domain
113c2gnqA_



not modelled 27.7 11 PDB header:transcription
Chain: A: PDB Molecule:wd-repeat protein 5;
PDBTitle: structure of wdr5
114c3ei3B_



not modelled 27.7 10 PDB header:dna binding protein
Chain: B: PDB Molecule:dna damage-binding protein 2;
PDBTitle: structure of the hsddb1-drddb2 complex
115c2zuyA_



not modelled 27.3 15 PDB header:lyase
Chain: A: PDB Molecule:yesx protein;
PDBTitle: crystal structure of exotype rhamnogalacturonan lyase yesx
116c3pjzA_



not modelled 27.0 20 PDB header:transport protein
Chain: A: PDB Molecule:potassium uptake protein trkh;
PDBTitle: crystal structure of the potassium transporter trkh from vibrio2 parahaemolyticus
117d1zgka1



not modelled 25.8 37 Fold:6-bladed beta-propeller
Superfamily:Kelch motif
Family:Kelch motif
118c3odtB_



not modelled 25.6 17 PDB header:nuclear protein
Chain: B: PDB Molecule:protein doa1;
PDBTitle: crystal structure of wd40 beta propeller domain of doa1
119c3eg6A_



not modelled 25.3 11 PDB header:protein binding
Chain: A: PDB Molecule:wd repeat-containing protein 5;
PDBTitle: structure of wdr5 bound to mll1 peptide
120c3of6D_



not modelled 24.9 33 PDB header:immune system
Chain: D: PDB Molecule:pre t-cell antigen receptor alpha;
PDBTitle: human pre-t cell receptor crystal structure

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0