Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	M	P	L	S	L	L	I	G	L	R	F	S	R	G	R	R	R	G	G	M	V	S	L	I	S	V	I	S	T	I	G	I	A	L	G	V	A	V	L	I	V	G	L	S	A	M	N	G	F	E	R	E	L	N	N	R	I	L
Secondary structure
SS confidence
Disorder		?	?	?	?														?	?	?	?	?																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	V	V	P	H	G	E	I	E	A	V	D	Q	P	W	T	N	W	Q	E	A	L	D	H	V	Q	K	V	P	G	I	A	A	A	A	P	Y	I	N	F	T	G	L	V	E	S	G	A	N	L	R	A	I	Q	V	K	G	V	N	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?						?	?	?	?	?	?	?	?																													?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	Q	E	Q	R	L	S	A	L	P	S	F	V	Q	G	D	A	W	R	N	F	K	A	G	E	Q	Q	I	I	I	G	K	G	V	A	D	A	L	K	V	K	Q	G	D	W	V	S	I	M	I	P	N	S	N	P	E	H	K	L	M
Secondary structure
SS confidence
Disorder									?				?	?		?		?	?		?	?	?	?	?																											?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	P	K	R	V	R	L	H	V	A	G	I	L	Q	L	S	G	Q	L	D	H	S	F	A	M	I	P	L	A	D	A	Q	Q	Y	L	D	M	G	S	S	V	S	G	I	A	L	K	M	T	D	V	F	N	A	N	K	L	V	R	D
Secondary structure
SS confidence
Disorder		?	?	?	?										?	?		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	G	E	V	T	N	S	Y	V	Y	I	K	S	W	I	G	T	Y	G	Y	M	Y	R	D	I	Q	M	I	R	A	I	M	Y	L	A	M	V	L	V	I	G	V	A	C	F	N	I	V	S	T	L	V	M	A	V	K	D	K	S	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	I	A	V	L	R	T	L	G	A	K	D	G	L	I	R	A	I	F	V	W	Y	G	L	L	A	G	L	F	G	S	L	C	G	V	I	I	G	V	V	V	S	L	Q	L	T	P	I	I	E	W	I	E	K	L	I	G	H	Q	F
Secondary structure
SS confidence
Disorder																																																			?		?	?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Sequence		L	S	S	D	I	Y	F	I	D	F	L	P	S	E	L	H	W	L	D	V	F	Y	V	L	V	T	A	L	L	L	S	L	L	A	S	W	Y	P	A	R	R	A	S	N	I	D	P	A	R	V	L	S	G	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																																											?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ftj chain A Region: 57 - 263 Aligned: 192 Modelled: 196 Confidence: 99.0% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans Phyre2 PDB 3is6 chain A Region: 86 - 243 Aligned: 145 Modelled: 154 Confidence: 97.5% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:putative permease protein, abc transporter; PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a Phyre2 PDB 1cii chain A Region: 261 - 353 Aligned: 88 Modelled: 93 Confidence: 85.2% Identity: 15% PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Phyre2 PDB 3lti chain A Region: 304 - 319 Aligned: 16 Modelled: 16 Confidence: 25.2% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains Phyre2 PDB 2r6g chain G domain 1 Region: 306 - 413 Aligned: 104 Modelled: 108 Confidence: 15.8% Identity: 13% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 1col chain A Region: 317 - 406 Aligned: 64 Modelled: 64 Confidence: 15.0% Identity: 9% Fold: Toxins' membrane translocation domains Superfamily: Colicin Family: Colicin Phyre2 PDB 1mvf chain D Region: 144 - 178 Aligned: 35 Modelled: 35 Confidence: 13.4% Identity: 17% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 3k07 chain A Region: 232 - 400 Aligned: 164 Modelled: 169 Confidence: 13.3% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa Phyre2 PDB 2yvx chain D Region: 280 - 410 Aligned: 99 Modelled: 105 Confidence: 12.1% Identity: 14% PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte Phyre2 PDB 1g8k chain A domain 1 Region: 144 - 207 Aligned: 64 Modelled: 64 Confidence: 12.0% Identity: 11% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 1ub4 chain C Region: 144 - 178 Aligned: 35 Modelled: 35 Confidence: 11.6% Identity: 17% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 2yvx chain A domain 3 Region: 311 - 407 Aligned: 71 Modelled: 71 Confidence: 11.4% Identity: 18% Fold: MgtE membrane domain-like Superfamily: MgtE membrane domain-like Family: MgtE membrane domain-like Phyre2 PDB 2jsx chain A Region: 63 - 98 Aligned: 36 Modelled: 36 Confidence: 11.3% Identity: 11% PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd Phyre2 PDB 1ogy chain A domain 1 Region: 143 - 179 Aligned: 37 Modelled: 37 Confidence: 10.5% Identity: 11% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 2jio chain A domain 1 Region: 143 - 207 Aligned: 65 Modelled: 65 Confidence: 10.4% Identity: 12% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 1scj chain B Region: 77 - 96 Aligned: 20 Modelled: 20 Confidence: 10.4% Identity: 20% Fold: Ferredoxin-like Superfamily: Protease propeptides/inhibitors Family: Subtilase propeptides/inhibitors Phyre2 PDB 2cwb chain A Region: 299 - 323 Aligned: 25 Modelled: 25 Confidence: 9.9% Identity: 16% PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin Phyre2 PDB 2a8v chain A Region: 138 - 170 Aligned: 33 Modelled: 33 Confidence: 9.6% Identity: 21% PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex Phyre2 PDB 2l66 chain B Region: 143 - 184 Aligned: 42 Modelled: 42 Confidence: 9.6% Identity: 24% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. Phyre2 PDB 2pmw chain A Region: 77 - 96 Aligned: 20 Modelled: 20 Confidence: 9.6% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: the crystal structure of proprotein convertase subtilisin2 kexin type 9 (pcsk9) Phyre2 1 c3ftjA_ 2 c3is6A_ 3 c1ciiA_ 4 c3ltiA_ 5 d2r6gg1 6 d1cola_ 7 d1mvfd_ 8 c3k07A_ 9 c2yvxD_ 10 d1g8ka1 11 d1ub4c_ 12 d2yvxa3 13 c2jsxA_ 14 d1ogya1 15 d2jioa1 16 d1scjb_ 17 c2cwbA_ 18 c2a8vA_ 19 c2l66B_ 20 c2pmwA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ftjA_ 99.0 14 PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans 2 c3is6A_ 97.5 10 PDB header:transport protein Chain: A: PDB Molecule:putative permease protein, abc transporter; PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a 3 c1ciiA_ 85.2 15 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 4 c3ltiA_ 25.2 31 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 5 d2r6gg1 15.8 13 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 6 d1cola_ 15.0 9 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 7 d1mvfd_ 13.4 17 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 8 c3k07A_ 13.3 13 PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa 9 c2yvxD_ 12.1 14 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 10 d1g8ka1 12.0 11 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 11 d1ub4c_ 11.6 17 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 12 d2yvxa3 11.4 18 Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like 13 c2jsxA_ 11.3 11 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 14 d1ogya1 10.5 11 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 15 d2jioa1 10.4 12 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 16 d1scjb_ 10.4 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 17 c2cwbA_ 9.9 16 PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin 18 c2a8vA_ 9.6 21 PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex 19 c2l66B_ 9.6 24 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 20 c2pmwA_ 9.6 15 PDB header:hydrolase Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: the crystal structure of proprotein convertase subtilisin2 kexin type 9 (pcsk9) 21 c2w2mP_ not modelled 9.6 15 PDB header:hydrolase/receptor Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: wt pcsk9-deltac bound to wt egf-a of ldlr 22 c2p4eP_ not modelled 9.6 15 PDB header:hydrolase Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: crystal structure of pcsk9 23 d2vbua1 not modelled 9.5 27 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 24 c1wr1B_ not modelled 9.3 12 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 25 d2dnaa1 not modelled 9.3 12 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 26 d1o8ba2 not modelled 9.2 7 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 27 d1a62a2 not modelled 9.1 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 28 d1spbp_ not modelled 9.1 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 29 c2w1tB_ not modelled 9.0 19 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 30 d2bwba1 not modelled 9.0 12 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 31 c2dahA_ not modelled 9.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 32 d1vlfm1 not modelled 8.7 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 33 d1veja1 not modelled 8.6 12 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 34 c2dnaA_ not modelled 8.5 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 35 c3fewX_ not modelled 8.5 9 PDB header:immune system Chain: X: PDB Molecule:colicin s4; PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain 36 d1y5ia1 not modelled 8.5 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 37 d1h0ha1 not modelled 8.4 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 38 d1m0sa2 not modelled 8.3 14 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 39 d1uj4a2 not modelled 8.2 14 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 40 d2daha1 not modelled 8.2 12 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 41 c2e74E_ not modelled 8.1 8 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 42 c1vf5E_ not modelled 8.1 8 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 43 d2e74e1 not modelled 8.1 8 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 44 c1vf5R_ not modelled 8.1 8 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 45 c2e75E_ not modelled 8.1 8 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 46 c2e76E_ not modelled 8.1 8 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 47 d1lk5a2 not modelled 8.0 14 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 48 c3hzqA_ not modelled 7.9 8 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: structure of a tetrameric mscl in an expanded intermediate2 state 49 d1tmoa1 not modelled 7.9 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 50 d1dv0a_ not modelled 7.9 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 51 d2fy9a1 not modelled 7.6 14 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 52 c2k21A_ not modelled 7.5 17 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 53 d1dmra1 not modelled 7.4 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 54 c3d31D_ not modelled 7.4 15 PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans 55 d3d31c1 not modelled 7.4 15 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 56 d2iv2x1 not modelled 7.3 11 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 57 d1yfba1 not modelled 7.2 15 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 58 d1kqfa1 not modelled 7.2 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 59 c2jy5A_ not modelled 7.1 8 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 60 c2kncA_ not modelled 7.1 17 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 61 c3idwA_ not modelled 7.0 44 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 62 c2glwA_ not modelled 7.0 26 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 63 c1eu1A_ not modelled 6.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments. 64 c2kncB_ not modelled 6.8 6 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 65 d1eu1a1 not modelled 6.6 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 66 c2iv2X_ not modelled 6.5 11 PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli 67 c1wlfA_ not modelled 6.4 15 PDB header:protein transport Chain: A: PDB Molecule:peroxisome biogenesis factor 1; PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain 68 c2jpcA_ not modelled 6.2 14 PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein 69 c1h5nC_ not modelled 6.1 18 PDB header:oxidoreductase Chain: C: PDB Molecule:dmso reductase; PDBTitle: dmso reductase modified by the presence of dms and air 70 c2ki8A_ not modelled 6.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7 71 d1e32a1 not modelled 6.0 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 72 d1q08a_ not modelled 5.9 25 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators 73 c3kwmC_ not modelled 5.9 7 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 74 c2k29A_ not modelled 5.6 19 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 75 d1oqya2 not modelled 5.5 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 76 d1ijwc_ not modelled 5.4 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 77 c2v45A_ not modelled 5.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand 78 d1m56d_ not modelled 5.4 12 Fold:Single transmembrane helix Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV Family:Bacterial aa3 type cytochrome c oxidase subunit IV 79 d1ygya3 not modelled 5.3 3 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 80 c1lkzB_ not modelled 5.3 7 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 81 c2rmzA_ not modelled 5.3 14 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 82 c2nyaF_ not modelled 5.3 18 PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli 83 c1zc1A_ not modelled 5.3 20 PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites 84 c2ro5B_ not modelled 5.3 19 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt 85 c2yujA_ not modelled 5.3 20 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 86 c2ivfA_ not modelled 5.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 87 d1dzfa2 not modelled 5.2 29 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 88 c1lk5C_ not modelled 5.1 14 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 89 c2kr6A_ not modelled 5.0 26 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 90 d1hmja_ not modelled 5.0 18 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 91 c1g8jC_ not modelled 5.0 11 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0