Phyre 2 Results for P75958

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P75958
Date | Thu Jan 5 12:16:27 GMT 2012
Unique Job ID | 45746946a7ff18a9

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3ftjA_
Top template information
PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans
Confidence and coverage
Confidence: | 99.0% | Coverage: | 46%
192 residues ( 46% of your sequence) have been modelled with 99.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | M | P | L | S | L | L | I | G | L | R | F | S | R | G | R | R | R | G | G | M | V | S | L | I | S | V | I | S | T | I | G | I | A | L | G | V | A | V | L | I | V | G | L | S | A | M | N | G | F | E | R | E | L | N | N | R | I | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | V | V | P | H | G | E | I | E | A | V | D | Q | P | W | T | N | W | Q | E | A | L | D | H | V | Q | K | V | P | G | I | A | A | A | A | P | Y | I | N | F | T | G | L | V | E | S | G | A | N | L | R | A | I | Q | V | K | G | V | N | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | Q | Q | E | Q | R | L | S | A | L | P | S | F | V | Q | G | D | A | W | R | N | F | K | A | G | E | Q | Q | I | I | I | G | K | G | V | A | D | A | L | K | V | K | Q | G | D | W | V | S | I | M | I | P | N | S | N | P | E | H | K | L | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? |  |  |  | ? | ? |  | ? |  | ? | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | Q | P | K | R | V | R | L | H | V | A | G | I | L | Q | L | S | G | Q | L | D | H | S | F | A | M | I | P | L | A | D | A | Q | Q | Y | L | D | M | G | S | S | V | S | G | I | A | L | K | M | T | D | V | F | N | A | N | K | L | V | R | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | A | G | E | V | T | N | S | Y | V | Y | I | K | S | W | I | G | T | Y | G | Y | M | Y | R | D | I | Q | M | I | R | A | I | M | Y | L | A | M | V | L | V | I | G | V | A | C | F | N | I | V | S | T | L | V | M | A | V | K | D | K | S | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | D | I | A | V | L | R | T | L | G | A | K | D | G | L | I | R | A | I | F | V | W | Y | G | L | L | A | G | L | F | G | S | L | C | G | V | I | I | G | V | V | V | S | L | Q | L | T | P | I | I | E | W | I | E | K | L | I | G | H | Q | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | .
Sequence |  | L | S | S | D | I | Y | F | I | D | F | L | P | S | E | L | H | W | L | D | V | F | Y | V | L | V | T | A | L | L | L | S | L | L | A | S | W | Y | P | A | R | R | A | S | N | I | D | P | A | R | V | L | S | G | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3ftjA_ |

### PDB 3ftj chain A

Region: 57 - 263
Aligned: 192
Modelled: 196
Confidence: 99.0%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein
PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans

Phyre2
2 |
| c3is6A_ |

### PDB 3is6 chain A

Region: 86 - 243
Aligned: 145
Modelled: 154
Confidence: 97.5%
Identity: 10%
PDB header:transport protein
Chain: A: PDB Molecule:putative permease protein, abc transporter;
PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a

Phyre2
3 |
| c1ciiA_ |

### PDB 1cii chain A

Region: 261 - 353
Aligned: 88
Modelled: 93
Confidence: 85.2%
Identity: 15%
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia

Phyre2
4 |
| c3ltiA_ |

### PDB 3lti chain A

Region: 304 - 319
Aligned: 16
Modelled: 16
Confidence: 25.2%
Identity: 31%
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains

Phyre2
5 |
| d2r6gg1 |

### PDB 2r6g chain G domain 1

Region: 306 - 413
Aligned: 104
Modelled: 108
Confidence: 15.8%
Identity: 13%
Fold: MetI-like
Superfamily: MetI-like
Family: MetI-like

Phyre2
6 |
| d1cola_ |

### PDB 1col chain A

Region: 317 - 406
Aligned: 64
Modelled: 64
Confidence: 15.0%
Identity: 9%
Fold: Toxins' membrane translocation domains
Superfamily: Colicin
Family: Colicin

Phyre2
7 |
| d1mvfd_ |

### PDB 1mvf chain D

Region: 144 - 178
Aligned: 35
Modelled: 35
Confidence: 13.4%
Identity: 17%
Fold: Double-split beta-barrel
Superfamily: AbrB/MazE/MraZ-like
Family: Kis/PemI addiction antidote

Phyre2
8 |
| c3k07A_ |

### PDB 3k07 chain A

Region: 232 - 400
Aligned: 164
Modelled: 169
Confidence: 13.3%
Identity: 13%
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa

Phyre2
9 |
| c2yvxD_ |

### PDB 2yvx chain D

Region: 280 - 410
Aligned: 99
Modelled: 105
Confidence: 12.1%
Identity: 14%
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte

Phyre2
10 |
| d1g8ka1 |

### PDB 1g8k chain A domain 1

Region: 144 - 207
Aligned: 64
Modelled: 64
Confidence: 12.0%
Identity: 11%
Fold: Double psi beta-barrel
Superfamily: ADC-like
Family: Formate dehydrogenase/DMSO reductase, C-terminal domain

Phyre2
11 |
| d1ub4c_ |

### PDB 1ub4 chain C

Region: 144 - 178
Aligned: 35
Modelled: 35
Confidence: 11.6%
Identity: 17%
Fold: Double-split beta-barrel
Superfamily: AbrB/MazE/MraZ-like
Family: Kis/PemI addiction antidote

Phyre2
12 |
| d2yvxa3 |

### PDB 2yvx chain A domain 3

Region: 311 - 407
Aligned: 71
Modelled: 71
Confidence: 11.4%
Identity: 18%
Fold: MgtE membrane domain-like
Superfamily: MgtE membrane domain-like
Family: MgtE membrane domain-like

Phyre2
13 |
| c2jsxA_ |

### PDB 2jsx chain A

Region: 63 - 98
Aligned: 36
Modelled: 36
Confidence: 11.3%
Identity: 11%
PDB header:chaperone
Chain: A: PDB Molecule:protein napd;
PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd

Phyre2
14 |
| d1ogya1 |

### PDB 1ogy chain A domain 1

Region: 143 - 179
Aligned: 37
Modelled: 37
Confidence: 10.5%
Identity: 11%
Fold: Double psi beta-barrel
Superfamily: ADC-like
Family: Formate dehydrogenase/DMSO reductase, C-terminal domain

Phyre2
15 |
| d2jioa1 |

### PDB 2jio chain A domain 1

Region: 143 - 207
Aligned: 65
Modelled: 65
Confidence: 10.4%
Identity: 12%
Fold: Double psi beta-barrel
Superfamily: ADC-like
Family: Formate dehydrogenase/DMSO reductase, C-terminal domain

Phyre2
16 |
| d1scjb_ |

### PDB 1scj chain B

Region: 77 - 96
Aligned: 20
Modelled: 20
Confidence: 10.4%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: Protease propeptides/inhibitors
Family: Subtilase propeptides/inhibitors

Phyre2
17 |
| c2cwbA_ |

### PDB 2cwb chain A

Region: 299 - 323
Aligned: 25
Modelled: 25
Confidence: 9.9%
Identity: 16%
PDB header:protein binding
Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g
PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin

Phyre2
18 |
| c2a8vA_ |

### PDB 2a8v chain A

Region: 138 - 170
Aligned: 33
Modelled: 33
Confidence: 9.6%
Identity: 21%
PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex

Phyre2
19 |
| c2l66B_ |

### PDB 2l66 chain B

Region: 143 - 184
Aligned: 42
Modelled: 42
Confidence: 9.6%
Identity: 24%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, abrb family;
PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea.

Phyre2
20 |
| c2pmwA_ |

### PDB 2pmw chain A

Region: 77 - 96
Aligned: 20
Modelled: 20
Confidence: 9.6%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: the crystal structure of proprotein convertase subtilisin2 kexin type 9 (pcsk9)

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3ftjA_ |
|  | 99.0 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans
2 | c3is6A_ |
|  | 97.5 | 10 | PDB header:transport protein Chain: A: PDB Molecule:putative permease protein, abc transporter; PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a
3 | c1ciiA_ |
|  | 85.2 | 15 | PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
4 | c3ltiA_ |
|  | 25.2 | 31 | PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
5 | d2r6gg1 |
|  | 15.8 | 13 | Fold:MetI-like Superfamily:MetI-like Family:MetI-like
6 | d1cola_ |
|  | 15.0 | 9 | Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin
7 | d1mvfd_ |
|  | 13.4 | 17 | Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote
8 | c3k07A_ |
|  | 13.3 | 13 | PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa
9 | c2yvxD_ |
|  | 12.1 | 14 | PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte
10 | d1g8ka1 |
|  | 12.0 | 11 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
11 | d1ub4c_ |
|  | 11.6 | 17 | Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote
12 | d2yvxa3 |
|  | 11.4 | 18 | Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like
13 | c2jsxA_ |
|  | 11.3 | 11 | PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd
14 | d1ogya1 |
|  | 10.5 | 11 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
15 | d2jioa1 |
|  | 10.4 | 12 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
16 | d1scjb_ |
|  | 10.4 | 20 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors
17 | c2cwbA_ |
|  | 9.9 | 16 | PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
18 | c2a8vA_ |
|  | 9.6 | 21 | PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex
19 | c2l66B_ |
|  | 9.6 | 24 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea.
20 | c2pmwA_ |
|  | 9.6 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: the crystal structure of proprotein convertase subtilisin2 kexin type 9 (pcsk9)
21 | c2w2mP_ |
| not modelled | 9.6 | 15 | PDB header:hydrolase/receptor Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: wt pcsk9-deltac bound to wt egf-a of ldlr
22 | c2p4eP_ |
| not modelled | 9.6 | 15 | PDB header:hydrolase Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: crystal structure of pcsk9
23 | d2vbua1 |
| not modelled | 9.5 | 27 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like
24 | c1wr1B_ |
| not modelled | 9.3 | 12 | PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
25 | d2dnaa1 |
| not modelled | 9.3 | 12 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
26 | d1o8ba2 |
| not modelled | 9.2 | 7 | Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
27 | d1a62a2 |
| not modelled | 9.1 | 21 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
28 | d1spbp_ |
| not modelled | 9.1 | 20 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors
29 | c2w1tB_ |
| not modelled | 9.0 | 19 | PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt
30 | d2bwba1 |
| not modelled | 9.0 | 12 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
31 | c2dahA_ |
| not modelled | 9.0 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
32 | d1vlfm1 |
| not modelled | 8.7 | 13 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
33 | d1veja1 |
| not modelled | 8.6 | 12 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
34 | c2dnaA_ |
| not modelled | 8.5 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna
35 | c3fewX_ |
| not modelled | 8.5 | 9 | PDB header:immune system Chain: X: PDB Molecule:colicin s4; PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain
36 | d1y5ia1 |
| not modelled | 8.5 | 17 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
37 | d1h0ha1 |
| not modelled | 8.4 | 17 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
38 | d1m0sa2 |
| not modelled | 8.3 | 14 | Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
39 | d1uj4a2 |
| not modelled | 8.2 | 14 | Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
40 | d2daha1 |
| not modelled | 8.2 | 12 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
41 | c2e74E_ |
| not modelled | 8.1 | 8 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
42 | c1vf5E_ |
| not modelled | 8.1 | 8 | PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
43 | d2e74e1 |
| not modelled | 8.1 | 8 | Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex
44 | c1vf5R_ |
| not modelled | 8.1 | 8 | PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
45 | c2e75E_ |
| not modelled | 8.1 | 8 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
46 | c2e76E_ |
| not modelled | 8.1 | 8 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
47 | d1lk5a2 |
| not modelled | 8.0 | 14 | Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
48 | c3hzqA_ |
| not modelled | 7.9 | 8 | PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: structure of a tetrameric mscl in an expanded intermediate2 state
49 | d1tmoa1 |
| not modelled | 7.9 | 18 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
50 | d1dv0a_ |
| not modelled | 7.9 | 21 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
51 | d2fy9a1 |
| not modelled | 7.6 | 14 | Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like
52 | c2k21A_ |
| not modelled | 7.5 | 17 | PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
53 | d1dmra1 |
| not modelled | 7.4 | 16 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
54 | c3d31D_ |
| not modelled | 7.4 | 15 | PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans
55 | d3d31c1 |
| not modelled | 7.4 | 15 | Fold:MetI-like Superfamily:MetI-like Family:MetI-like
56 | d2iv2x1 |
| not modelled | 7.3 | 11 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
57 | d1yfba1 |
| not modelled | 7.2 | 15 | Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like
58 | d1kqfa1 |
| not modelled | 7.2 | 19 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
59 | c2jy5A_ |
| not modelled | 7.1 | 8 | PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain
60 | c2kncA_ |
| not modelled | 7.1 | 17 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
61 | c3idwA_ |
| not modelled | 7.0 | 44 | PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2
62 | c2glwA_ |
| not modelled | 7.0 | 26 | PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
63 | c1eu1A_ |
| not modelled | 6.9 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
64 | c2kncB_ |
| not modelled | 6.8 | 6 | PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
65 | d1eu1a1 |
| not modelled | 6.6 | 18 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
66 | c2iv2X_ |
| not modelled | 6.5 | 11 | PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli
67 | c1wlfA_ |
| not modelled | 6.4 | 15 | PDB header:protein transport Chain: A: PDB Molecule:peroxisome biogenesis factor 1; PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain
68 | c2jpcA_ |
| not modelled | 6.2 | 14 | PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein
69 | c1h5nC_ |
| not modelled | 6.1 | 18 | PDB header:oxidoreductase Chain: C: PDB Molecule:dmso reductase; PDBTitle: dmso reductase modified by the presence of dms and air
70 | c2ki8A_ |
| not modelled | 6.1 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7
71 | d1e32a1 |
| not modelled | 6.0 | 10 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like
72 | d1q08a_ |
| not modelled | 5.9 | 25 | Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators
73 | c3kwmC_ |
| not modelled | 5.9 | 7 | PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a
74 | c2k29A_ |
| not modelled | 5.6 | 19 | PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb
75 | d1oqya2 |
| not modelled | 5.5 | 22 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
76 | d1ijwc_ |
| not modelled | 5.4 | 25 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain
77 | c2v45A_ |
| not modelled | 5.4 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand
78 | d1m56d_ |
| not modelled | 5.4 | 12 | Fold:Single transmembrane helix Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV Family:Bacterial aa3 type cytochrome c oxidase subunit IV
79 | d1ygya3 |
| not modelled | 5.3 | 3 | Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
80 | c1lkzB_ |
| not modelled | 5.3 | 7 | PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli.
81 | c2rmzA_ |
| not modelled | 5.3 | 14 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
82 | c2nyaF_ |
| not modelled | 5.3 | 18 | PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli
83 | c1zc1A_ |
| not modelled | 5.3 | 20 | PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites
84 | c2ro5B_ |
| not modelled | 5.3 | 19 | PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt
85 | c2yujA_ |
| not modelled | 5.3 | 20 | PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1
86 | c2ivfA_ |
| not modelled | 5.3 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
87 | d1dzfa2 |
| not modelled | 5.2 | 29 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
88 | c1lk5C_ |
| not modelled | 5.1 | 14 | PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii
89 | c2kr6A_ |
| not modelled | 5.0 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit
90 | d1hmja_ |
| not modelled | 5.0 | 18 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
91 | c1g8jC_ |
| not modelled | 5.0 | 11 | PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0