07/01/2012 23:40:20 : INFO  : Run start: Sat Jan  7 23:40:20 GMT 2012
07/01/2012 23:40:23 : INFO  : Initialised job
07/01/2012 23:40:24 : INFO  : Renaming log file 'phyre2_20120107_234019.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/45746946a7ff18a9/phyre_20120107_234019.log'
07/01/2012 23:40:24 : INFO  : Initialised job:
Sequence
>batch____
MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL
AVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNP
QQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM
QPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRD
AGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSG
DIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQF
LSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ

07/01/2012 23:40:25 : INFO  : Checked sequence
07/01/2012 23:40:26 : INFO  : Finding homologues with PSI-BLAST
07/01/2012 23:40:27 : INFO  : PSI-BLAST 3 iterations
07/01/2012 23:43:19 : INFO  : PSI-BLAST 5 iterations
07/01/2012 23:47:45 : INFO  : Finished PSI-BLAST
07/01/2012 23:47:46 : INFO  : Running Buildali to generate a3m file
08/01/2012 01:33:30 : INFO  : Converting to HMM
08/01/2012 01:33:57 : INFO  : Calibrating HMM
08/01/2012 01:34:14 : INFO  : Searching HMM database
08/01/2012 01:43:51 : INFO  : Finished buildali
08/01/2012 01:43:52 : INFO  : Predicting secondary structure
08/01/2012 01:43:56 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 01:43:57 : INFO  : Predicting Disordered regions
08/01/2012 01:43:59 : INFO  : Predicted Disorder (Disopred)
08/01/2012 01:44:00 : INFO  : Running memsat_svm check
08/01/2012 01:48:25 : INFO  : Running memsat_svm full
08/01/2012 01:54:08 : INFO  : Predicted Transmembrane (memsat_svm) ID '45746946a7ff18a9'
08/01/2012 01:54:09 : INFO  : Initialising fold library search
08/01/2012 01:54:10 : INFO  : Initialised search input
08/01/2012 01:54:11 : INFO  : Building Ensemble models
08/01/2012 01:54:12 : INFO  : Building hh.c3ftjA_.model.1.pdb
08/01/2012 01:54:18 : INFO  : Building hh.c1ciiA_.model.2.pdb
08/01/2012 01:54:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/45746946a7ff18a9/hh.c1ciiA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/45746946a7ff18a9/c1ciiA_.3.pdb
08/01/2012 01:54:25 : INFO  : Building c3ftjA_.1.pdb
08/01/2012 01:54:32 : INFO  : Building c3is6A_.2.pdb
08/01/2012 01:54:39 : INFO  : Building c1ciiA_.3.pdb
08/01/2012 01:54:46 : INFO  : Building c3ltiA_.4.pdb
08/01/2012 01:54:53 : INFO  : Building d2r6gg1.5.pdb
08/01/2012 01:55:00 : INFO  : Building d1cola_.6.pdb
08/01/2012 01:55:09 : INFO  : Building d1mvfd_.7.pdb
08/01/2012 01:55:18 : INFO  : Building c3k07A_.8.pdb
08/01/2012 01:55:28 : INFO  : Building c2yvxD_.9.pdb
08/01/2012 01:55:38 : INFO  : Building d1g8ka1.10.pdb
08/01/2012 01:55:49 : INFO  : Building d1ub4c_.11.pdb
08/01/2012 01:56:00 : INFO  : Building d2yvxa3.12.pdb
08/01/2012 01:56:06 : INFO  : Building c2jsxA_.13.pdb
08/01/2012 01:56:12 : INFO  : Building d1ogya1.14.pdb
08/01/2012 01:56:20 : INFO  : Building d2jioa1.15.pdb
08/01/2012 01:56:26 : INFO  : Building d1scjb_.16.pdb
08/01/2012 01:56:32 : INFO  : Building c2cwbA_.17.pdb
08/01/2012 01:56:39 : INFO  : Building c2a8vA_.18.pdb
08/01/2012 01:56:44 : INFO  : Building c2l66B_.19.pdb
08/01/2012 01:56:51 : INFO  : Building c2pmwA_.20.pdb
08/01/2012 01:57:13 : INFO  : Finished HH model building
08/01/2012 01:57:13 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 01:58:18 : INFO  : html domain output complete ID '45746946a7ff18a9'
08/01/2012 02:06:39 : INFO  : Run end  : Sun Jan  8 02:06:38 GMT 2012
