Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	E	I	N	P	V	N	N	R	I	Q	D	L	T	E	R	S	D	V	L	R	G	Y	L	D	Y	D	A	K	K	E	R	L	E	E	V	N	A	E	L	E	Q	P	D	V	W	N	E	P	E	R	A	Q	A	L	G	K	E	R
Secondary structure
SS confidence
Disorder		?	?	?																																								?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	S	L	E	A	V	V	D	T	L	D	Q	M	K	Q	G	L	E	D	V	S	G	L	L	E	L	A	V	E	A	D	D	E	E	T	F	N	E	A	V	A	E	L	D	A	L	E	E	K	L	A	Q	L	E	F	R	R	M	F	S
Secondary structure
SS confidence
Disorder																															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	E	Y	D	S	A	D	C	Y	L	D	I	Q	A	G	S	G	G	T	E	A	Q	D	W	A	S	M	L	E	R	M	Y	L	R	W	A	E	S	R	G	F	K	T	E	I	I	E	E	S	E	G	E	V	A	G	I	K	S	V	T
Secondary structure
SS confidence
Disorder																																																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	K	I	S	G	D	Y	A	Y	G	W	L	R	T	E	T	G	V	H	R	L	V	R	K	S	P	F	D	S	G	G	R	R	H	T	S	F	S	S	A	F	V	Y	P	E	V	D	D	D	I	D	I	E	I	N	P	A	D	L	R
Secondary structure
SS confidence
Disorder																				?				?	?	?	?	?	?	?	?	?	?							?	?			?	?	?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	D	V	Y	R	T	S	G	A	G	G	Q	H	V	N	R	T	E	S	A	V	R	I	T	H	I	P	T	G	I	V	T	Q	C	Q	N	D	R	S	Q	H	K	N	K	D	Q	A	M	K	Q	M	K	A	K	L	Y	E	L	E	M
Secondary structure
SS confidence
Disorder						?	?			?		?	?																										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Q	K	K	N	A	E	K	Q	A	M	E	D	N	K	S	D	I	G	W	G	S	Q	I	R	S	Y	V	L	D	D	S	R	I	K	D	L	R	T	G	V	E	T	R	N	T	Q	A	V	L	D	G	S	L	D	Q	F	I	E	A	S
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?																							?						?
Disorder confidence
		.	.	.	.	.
Sequence		L	K	A	G	L
Secondary structure
SS confidence
Disorder			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gqe chain A Region: 4 - 365 Aligned: 362 Modelled: 354 Confidence: 100.0% Identity: 97% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 2ihr chain 1 Region: 14 - 364 Aligned: 347 Modelled: 351 Confidence: 100.0% Identity: 46% PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus Phyre2 PDB 3d5c chain X Region: 26 - 363 Aligned: 337 Modelled: 338 Confidence: 100.0% Identity: 34% PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. Phyre2 PDB 1rq0 chain A Region: 30 - 363 Aligned: 308 Modelled: 334 Confidence: 100.0% Identity: 39% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 2b3t chain B domain 1 Region: 30 - 363 Aligned: 288 Modelled: 300 Confidence: 100.0% Identity: 43% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 1zbt chain A Region: 44 - 363 Aligned: 307 Modelled: 319 Confidence: 100.0% Identity: 30% PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution Phyre2 PDB 2jva chain A Region: 229 - 300 Aligned: 72 Modelled: 72 Confidence: 99.8% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 Phyre2 PDB 2jy9 chain A Region: 225 - 299 Aligned: 75 Modelled: 75 Confidence: 99.8% Identity: 35% PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 Phyre2 PDB 1j26 chain A Region: 228 - 299 Aligned: 72 Modelled: 72 Confidence: 99.8% Identity: 25% Fold: dsRBD-like Superfamily: Peptidyl-tRNA hydrolase domain-like Family: Peptidyl-tRNA hydrolase domain Phyre2 PDB 3err chain B Region: 31 - 132 Aligned: 98 Modelled: 100 Confidence: 91.6% Identity: 11% PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase Phyre2 PDB 1wpa chain A Region: 3 - 72 Aligned: 70 Modelled: 70 Confidence: 90.3% Identity: 17% PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: 1.5 angstrom crystal structure of human occludin fragment2 413-522 Phyre2 PDB 1xaw chain A Region: 3 - 72 Aligned: 70 Modelled: 70 Confidence: 89.7% Identity: 17% PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: crystal structure of the cytoplasmic distal c-terminal2 domain of occludin Phyre2 PDB 1fpo chain A domain 2 Region: 2 - 79 Aligned: 76 Modelled: 78 Confidence: 85.8% Identity: 11% Fold: Open three-helical up-and-down bundle Superfamily: HSC20 (HSCB), C-terminal oligomerisation domain Family: HSC20 (HSCB), C-terminal oligomerisation domain Phyre2 PDB 3lay chain F Region: 5 - 71 Aligned: 60 Modelled: 62 Confidence: 60.9% Identity: 22% PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 Phyre2 PDB 2dq3 chain A Region: 25 - 134 Aligned: 110 Modelled: 110 Confidence: 56.2% Identity: 20% PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 Phyre2 PDB 3uo2 chain A Region: 2 - 73 Aligned: 69 Modelled: 72 Confidence: 49.6% Identity: 13% PDB header:chaperone Chain: A: PDB Molecule:j-type co-chaperone jac1, mitochondrial; PDBTitle: jac1 co-chaperone from saccharomyces cerevisiae Phyre2 PDB 2dq0 chain A Region: 25 - 134 Aligned: 110 Modelled: 110 Confidence: 46.2% Identity: 13% PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog Phyre2 PDB 1deq chain O Region: 5 - 117 Aligned: 103 Modelled: 113 Confidence: 45.6% Identity: 11% PDB header: PDB COMPND: Phyre2 PDB 1set chain A domain 1 Region: 1 - 127 Aligned: 110 Modelled: 127 Confidence: 45.2% Identity: 20% Fold: Long alpha-hairpin Superfamily: tRNA-binding arm Family: Seryl-tRNA synthetase (SerRS) Phyre2 PDB 3dtp chain A Region: 3 - 117 Aligned: 111 Modelled: 115 Confidence: 43.7% Identity: 14% PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map Phyre2 1 d1gqea_ 2 c2ihr1_ 3 c3d5cX_ 4 d1rq0a_ 5 d2b3tb1 6 c1zbtA_ 7 c2jvaA_ 8 c2jy9A_ 9 d1j26a_ 10 c3errB_ 11 c1wpaA_ 12 c1xawA_ 13 d1fpoa2 14 c3layF_ 15 c2dq3A_ 16 c3uo2A_ 17 c2dq0A_ 18 c1deqO_ 19 d1seta1 20 c3dtpA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1gqea_ 100.0 97 Fold:Release factor Superfamily:Release factor Family:Release factor 2 c2ihr1_ 100.0 46 PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus 3 c3d5cX_ 100.0 34 PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. 4 d1rq0a_ 100.0 39 Fold:Release factor Superfamily:Release factor Family:Release factor 5 d2b3tb1 100.0 43 Fold:Release factor Superfamily:Release factor Family:Release factor 6 c1zbtA_ 100.0 30 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution 7 c2jvaA_ 99.8 26 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 8 c2jy9A_ 99.8 35 PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 9 d1j26a_ 99.8 25 Fold:dsRBD-like Superfamily:Peptidyl-tRNA hydrolase domain-like Family:Peptidyl-tRNA hydrolase domain 10 c3errB_ 91.6 11 PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase 11 c1wpaA_ 90.3 17 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: 1.5 angstrom crystal structure of human occludin fragment2 413-522 12 c1xawA_ 89.7 17 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: crystal structure of the cytoplasmic distal c-terminal2 domain of occludin 13 d1fpoa2 85.8 11 Fold:Open three-helical up-and-down bundle Superfamily:HSC20 (HSCB), C-terminal oligomerisation domain Family:HSC20 (HSCB), C-terminal oligomerisation domain 14 c3layF_ 60.9 22 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 15 c2dq3A_ 56.2 20 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 16 c3uo2A_ 49.6 13 PDB header:chaperone Chain: A: PDB Molecule:j-type co-chaperone jac1, mitochondrial; PDBTitle: jac1 co-chaperone from saccharomyces cerevisiae 17 c2dq0A_ 46.2 13 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog 18 c1deqO_ 45.6 11 PDB header: PDB COMPND: 19 d1seta1 45.2 20 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Seryl-tRNA synthetase (SerRS) 20 c3dtpA_ 43.7 14 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 21 c3ghgK_ not modelled 41.7 13 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 22 c2wmoA_ not modelled 39.2 14 PDB header:cell cycle Chain: A: PDB Molecule:dedicator of cytokinesis protein 9; PDBTitle: structure of the complex between dock9 and cdc42. 23 c2e1mA_ not modelled 38.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 24 c2jyaA_ not modelled 37.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1810; PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776 25 c3lssA_ not modelled 34.4 13 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp 26 c1f8sA_ not modelled 33.4 25 PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. 27 c3s2xB_ not modelled 32.2 19 PDB header:transferase Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha; PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain 28 c3fhnA_ not modelled 32.1 19 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein tip20; PDBTitle: structure of tip20p 29 c2yrvA_ not modelled 30.3 19 PDB header:transcription Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a; PDBTitle: solution structure of the rbb1nt domain of human2 rb(retinoblastoma)-binding protein 1 30 c1s1hI_ not modelled 30.2 15 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 31 c1wleB_ not modelled 29.1 21 PDB header:ligase Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate 32 c3qo8A_ not modelled 29.0 7 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic; PDBTitle: crystal structure of seryl-trna synthetase from candida albicans 33 d1cuna2 not modelled 28.8 11 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 34 c2chpC_ not modelled 28.1 19 PDB header:dna-binding protein Chain: C: PDB Molecule:metalloregulation dna-binding stress protein; PDBTitle: crystal structure of the dodecameric ferritin mrga from2 b.subtilis 168 35 d1tjoa_ not modelled 26.3 18 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 36 c1sryB_ not modelled 25.0 15 PDB header:ligase(synthetase) Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: refined crystal structure of the seryl-trna synthetase from2 thermus thermophilus at 2.5 angstroms resolution 37 d2spca_ not modelled 24.7 18 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 38 d1mqva_ not modelled 24.3 8 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 39 c1ei3E_ not modelled 23.6 15 PDB header: PDB COMPND: 40 c2gl2B_ not modelled 23.5 7 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 41 d1ivsa1 not modelled 23.4 15 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 42 d1nj1a3 not modelled 23.1 17 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 43 d1s05a_ not modelled 22.2 12 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 44 c3iq1A_ not modelled 21.1 15 PDB header:metal transport Chain: A: PDB Molecule:dps family protein; PDBTitle: crystal structure of dps protein from vibrio cholerae o1, a member of2 a broad superfamily of ferritin-like diiron-carboxylate proteins 45 c3gitA_ not modelled 19.9 19 PDB header:transferase Chain: A: PDB Molecule:carbon monoxide dehydrogenase/acetyl-coa synthase subunit PDBTitle: crystal structure of a truncated acetyl-coa synthase 46 c2c41K_ not modelled 19.8 10 PDB header:iron-binding/oxidation protein Chain: K: PDB Molecule:dps family dna-binding stress response protein; PDBTitle: x-ray structure of dps from thermosynechococcus elongatus 47 c2r6cG_ not modelled 19.7 12 PDB header:replication Chain: G: PDB Molecule:dnag primase, helicase binding domain; PDBTitle: crystal form bh2 48 c2cazF_ not modelled 19.4 60 PDB header:protein transport Chain: F: PDB Molecule:protein srn2; PDBTitle: escrt-i core 49 c3ojaB_ not modelled 18.8 16 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 50 c1s35A_ not modelled 18.5 13 PDB header:structural protein Chain: A: PDB Molecule:spectrin beta chain, erythrocyte; PDBTitle: crystal structure of repeats 8 and 9 of human erythroid2 spectrin 51 c1ei3C_ not modelled 18.2 9 PDB header: PDB COMPND: 52 c2c5iT_ not modelled 18.2 19 PDB header:protein transport Chain: T: PDB Molecule:t-snare affecting a late golgi compartment PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation 53 d1gqaa_ not modelled 18.0 18 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 54 d1s35a1 not modelled 17.5 15 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 55 c2vvlD_ not modelled 17.4 27 PDB header:oxidoreductase Chain: D: PDB Molecule:monoamine oxidase n; PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger. 56 c2qbvA_ not modelled 16.6 14 PDB header:isomerase Chain: A: PDB Molecule:chorismate mutase; PDBTitle: crystal structure of intracellular chorismate mutase from2 mycobacterium tuberculosis 57 d2gy9i1 not modelled 16.6 38 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 58 c3kwoA_ not modelled 16.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:putative bacterioferritin; PDBTitle: crystal structure of putative bacterioferritin from2 campylobacter jejuni 59 d2vqei1 not modelled 16.2 28 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 60 d2pc6a2 not modelled 15.9 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 61 c2d5kC_ not modelled 15.8 12 PDB header:metal binding protein Chain: C: PDB Molecule:dps family protein; PDBTitle: crystal structure of dps from staphylococcus aureus 62 c3ci9B_ not modelled 15.8 11 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 63 d1fafa_ not modelled 15.7 18 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 64 d1m0da_ not modelled 15.7 33 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 65 c3h0gA_ not modelled 15.7 17 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 66 d1ji4a_ not modelled 15.3 17 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 67 d1cpqa_ not modelled 15.2 18 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 68 c3m3wA_ not modelled 15.2 11 PDB header:endocytosis Chain: A: PDB Molecule:protein kinase c and casein kinase ii substrate protein 3; PDBTitle: crystal strcuture of mouse pacsin3 bar domain mutant 69 c3pdgA_ not modelled 15.1 18 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 70 c1gk4A_ not modelled 15.1 10 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 71 d1ji5a_ not modelled 14.8 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 72 d1u5pa2 not modelled 14.7 20 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 73 c2pc6C_ not modelled 14.7 19 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 74 d1ru3a_ not modelled 14.6 19 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Acetyl-CoA synthase 75 d2fgca2 not modelled 14.6 28 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 76 d1p7hl1 not modelled 14.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 77 c2k6lA_ not modelled 14.5 44 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the solution structure of xacb0070 from xanthonomas2 axonopodis pv citri reveals this new protein is a member of3 the rhh family of transcriptional repressors 78 d1nj8a3 not modelled 14.5 18 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 79 c3bbnI_ not modelled 14.4 19 PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein s9; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 80 c2c6rA_ not modelled 14.3 14 PDB header:dna-binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: fe-soaked crystal structure of the dps92 from deinococcus2 radiodurans 81 c3bboH_ not modelled 14.0 26 PDB header:ribosome Chain: H: PDB Molecule:ribosomal protein l5; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 82 c2z9fC_ not modelled 13.9 37 PDB header:biosynthetic protein Chain: C: PDB Molecule:cellulose synthase operon protein d; PDBTitle: crystal structure of axcesd protein from acetobacter xylinum 83 d2j8wa1 not modelled 13.6 18 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 84 c2xzmI_ not modelled 13.5 23 PDB header:ribosome Chain: I: PDB Molecule:rps16e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 85 d2f1fa1 not modelled 13.1 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 86 d1oaoc_ not modelled 13.1 19 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Acetyl-CoA synthase 87 c2f7nA_ not modelled 13.0 17 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: structure of d. radiodurans dps-1 88 c2zkqi_ not modelled 12.8 29 PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 89 d2f66c1 not modelled 12.7 47 Fold:Long alpha-hairpin Superfamily:Endosomal sorting complex assembly domain Family:VPS37 C-terminal domain-like 90 d2gu3a1 not modelled 12.1 21 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:PepSY-like 91 c2lf0A_ not modelled 12.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yibl; PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scatting, nesg4 target sfr339/ocsp target sf3636 92 d1utya_ not modelled 11.8 15 Fold:BTV NS2-like ssRNA-binding domain Superfamily:BTV NS2-like ssRNA-binding domain Family:BTV NS2-like ssRNA-binding domain 93 c1utyA_ not modelled 11.8 15 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 2; PDBTitle: crystal structure of the rna binding domain of bluetongue2 virus non-structural protein 2(ns2) 94 c2jzxA_ not modelled 11.4 21 PDB header:rna binding protein Chain: A: PDB Molecule:poly(rc)-binding protein 2; PDBTitle: pcbp2 kh1-kh2 domains 95 d1u5pa1 not modelled 11.4 16 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 96 c3pdyB_ not modelled 11.2 11 PDB header:structural protein Chain: B: PDB Molecule:plectin; PDBTitle: structure of the third and fourth spectrin repeats of the plakin2 domain of plectin 97 d2g5ca1 not modelled 11.1 19 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:TyrA dimerization domain-like 98 d1e85a_ not modelled 11.1 7 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 99 c2obaE_ not modelled 10.9 24 PDB header:lyase Chain: E: PDB Molecule:probable 6-pyruvoyl tetrahydrobiopterin synthase; PDBTitle: pseudomonas aeruginosa 6-pyruvoyl tetrahydrobiopterin synthase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0