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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c2zkqi_ | PDB header: ribosomal protein/rna | Chain: I: PDB Molecule: | PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map |
Added to library: Tue Mar 16 14:00:28 2010 | |
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Links to external resources | |
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Sequence | Q | S | V | Q | V | F | G | R | K | K | T | A | T | A | V | A | H | C | K | R | G | N | G | L | I | K | V | N | G | R | P | L | E | M | I | E | P | R | T | L | Q | Y | K | L | L | E | P | V | L | L | L | G | K | E | R | F | A | G | V | D | I | R | V | R | V | K | G | G | G | H |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | B | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | T | T | S | G | G | G | G | ![]() | ![]() | ![]() | ![]() | ![]() | T | S | S | T | T | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | ![]() |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . |
Sequence | V | A | Q | I | Y | A | I | R | Q | S | I | S | K | A | L | V | A | Y | Y | Q | K | Y | V | D | E | A | S | K | K | E | I | K | D | I | L | I | Q | Y | D | R | T | L | L | A | D | P | R | R | C | E | S | K | K | F | G | G | P | G | A | R | A | R | Y | Q | K | S | Y | R | ||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | T | S | S | S | S | S | S | S | T | T | S | T | T | S | S | S |
Download: | PDB structure | FASTA sequence |
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