PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3h0gA_

Fold library id	PDB Header	Molecule	Title
c3h0gA_	PDB header: transcription	Chain: A: PDB Molecule: dna-directed rna polymerase ii subunit rpb1;	PDBTitle: rna polymerase ii from schizosaccharomyces pombe

Links to external resources
Added to library: Sat Aug 28 20:00:55 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S G I Q F S P S S V P L R R V E E V Q F G I L S P E E I R S M S V A K I E F P E T M D E S G Q R P R V G G L L D P R L G T I D R Q F K C Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
B
T T
T T
S S S S S
S S S S S S S
S S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C G E T M A D C P G H F G H I E L A K P V F H I G F L S K I K K I L E C V C W N C G K L K I D S S N P K F N D T Q R Y R D P K N R L N A V W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S S
S
B
S S S S
T T T
S
S
S S S
T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N V C K T K M V C D T G L S A G S D N F D L S N P S A N M G H G G C G A A Q P T I R K D G L R L W G S W K R G K D E S D L P E K R L L S P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S S
S S
S S
S S
T T
B
S S S S
B
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E V H T I F T H I S S E D L A H L G L N E Q Y A R P D W M I I T V L P V P P P S V R P S I S V D G T S R G E D D L T H K L S D I I K A N A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
S S S
G G G S S B S S
G G G S
S S S
T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V R R C E Q E G A P A H I V S E Y E Q L L Q F H V A T Y M D N E I A G Q P Q A L Q K S G R P L K S I R A R L K G K E G R L R G N L M G K R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G
S S S T T T T
T T
S S
S S S S
T
S S S S S T T T T S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence D F S A R T V I T G D P N L S L D E L G V P R S I A K T L T Y P E T V T P Y N I Y Q L Q E L V R N G P D E H P G A K Y I I R D T G E R I D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S
T T B
B
T S
B
T T T
T T S S S
T T
B
T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence R Y H K R A G D I P L R Y G W R V E R H I R D G D V V I F N R Q P S L H K M S M M G H R I R V M P Y S T F R L N L S V T S P Y N A D F D G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
S S
S
S S
S G G G
S S S S G G G S G G G T
S S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence E M N M H V P Q S E E T R A E I Q E I T M V P K Q I V S P Q S N K P V M G I V Q D T L A G V R K F S L R D N F L T R N A V M N I M L W V P D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T
T T T T S T T T T S
T S T T
T G G G G
S S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence W D G I L P P P V I L K P K V L W T G K Q I L S L I I P K G I N L I R D D D K Q S L S N P T D S G M L I E N G E I I Y G V V D K K T V G A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S B
S S S
T T T T S
S S B
S S
S S
T T T
S
B S
S S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence Q G G L V H T I W K E K G P E I C K G F F N G I Q R V V N Y W L L H N G F S I G I G D T I A D A D T M K E V T R T V K E A R R Q V A E C I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S S S
T T T
G G G G S
S T T T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence D A Q H N R L K P E P G M T L R E S F E A K V S R I L N Q A R D N A G R S A E H S L K D S N N V K Q M V A A G S K G S F I N I S Q M S A C V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
S S
T T T T S
S S
T T T
S S
T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence G Q Q I V E G K R I P F G F K Y R T L P H F P K D D D S P E S R G F I E N S Y L R G L T P Q E F F F H A M A G R E G L I D T A V K T A E T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S S
S T T S S S T T S
S S
S T T T S S
S S
T T T
T T T T T T T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence Y I Q R R L V K A M E D V M V R Y D G T V R N A M G D I I Q F A Y G E D G L D A T L V E Y Q V F D S L R L S T K Q F E K K Y R I D L M E D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T
T T S
S S S S S S
B
G G G
T T T S
T T T S
T T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence S L S L Y M E N S I E N D S S V Q D L L D E E Y T Q L V A D R E L L C K F I F P K G D A R W P L P V N V Q R I I Q N A L Q I F H L E A K K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T S
S
T T S
S S T T T S S S S S S S
S
S
T T T T T T T S
T T S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence T D L L P S D I I N G L N E L I A K L T I F R G S D R I T R D V Q N N A T L L F Q I L L R S K F A V K R V I M E Y R L N K V A F E W I M G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S T T T T T S S T T S S S S S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence V E A R F Q Q A V V S P G E M V G T L A A Q S I G E P A T Q M T L N T F H Y A G V S S K N V T L G V P R L K E I L N V A K N I K T P S L T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B
S S
T T S S
S S
S G G G T T
S
S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence Y L M P W I A A N M D L A K N V Q T Q I E H T T L S T V T S A T E I H Y D P D P Q D T V I E E D K D F V E A F F A I P D E E V E E N L Y K Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S S T T T T T S S
S S
S
S
S T T
S S S
S T T
S S T T
S S
S

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence S P W L L R L E L D R A K M L D K K L S M S D V A G K I A E S F E R D L F T I W S E D N A D K L I I R C R I I R D D D R K A E D D D N M I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S T T T T
T T S G G G S S T T S
T T
S S
S
S S
S

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence E D V F L K T I E G H M L E S I S L R G V P N I T R V Y M M E H K I V R Q I E D G T F E R A D E W V L E T D G I N L T E A M T V E G V D A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S
T T
S S S
S
S T T T S S S S
T T

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . . . . . . . . . 1400

Sequence R T Y S N S F V E I L Q I L G I E A T R S A L L K E L R N V I E F D G S Y V N Y R H L A L L C D V M T S R G H L M A I T R H G I N R A E T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S
T T S
S S S
T S S S S
T T S
S
S

. . . . . . . . . 1410 . . . . . . . . . 1420 . . . . . . . . . 1430 . . . . . . . . . 1440 . . . . . . . . . 1450 . . . . . . . . . 1460 . . . . . . . . . 1470

Sequence A L M R C S F E E T V E I L M D A A A S G E K D D C K G I S E N I M L G Q L A P M G T G A F D I Y L D Q D M L M N Y S L G T A V P T L A G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T G G G T
B
S T T G G G T
S
S S T T S
S
S G G G G

. . . . . . . . . 1480 . . . . . . . . . 1490 . . . . . .

Sequence G M G T S Q L P E G A G T P Y E R S P M V D S G F V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T
S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	G	I	Q	F	S	P	S	S	V	P	L	R	R	V	E	E	V	Q	F	G	I	L	S	P	E	E	I	R	S	M	S	V	A	K	I	E	F	P	E	T	M	D	E	S	G	Q	R	P	R	V	G	G	L	L	D	P	R	L	G	T	I	D	R	Q	F	K	C	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S				S	S								B																					T	T		T	T		S	S	S	S	S			S	S	S	S	S	S	S				S	S	S	S				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	G	E	T	M	A	D	C	P	G	H	F	G	H	I	E	L	A	K	P	V	F	H	I	G	F	L	S	K	I	K	K	I	L	E	C	V	C	W	N	C	G	K	L	K	I	D	S	S	N	P	K	F	N	D	T	Q	R	Y	R	D	P	K	N	R	L	N	A	V	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			S	S	S	S												S		B													S	S	S	S		T	T	T				S			S		S									S	S		T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	V	C	K	T	K	M	V	C	D	T	G	L	S	A	G	S	D	N	F	D	L	S	N	P	S	A	N	M	G	H	G	G	C	G	A	A	Q	P	T	I	R	K	D	G	L	R	L	W	G	S	W	K	R	G	K	D	E	S	D	L	P	E	K	R	L	L	S	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	T	T			S	S				S	S							S	S		S	S											T	T						B			S	S	S	S		B		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	V	H	T	I	F	T	H	I	S	S	E	D	L	A	H	L	G	L	N	E	Q	Y	A	R	P	D	W	M	I	I	T	V	L	P	V	P	P	P	S	V	R	P	S	I	S	V	D	G	T	S	R	G	E	D	D	L	T	H	K	L	S	D	I	I	K	A	N	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S								S	S			S	S	S			G	G	G	S	S	B	S	S						G	G	G	S						S	S	S						T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	R	R	C	E	Q	E	G	A	P	A	H	I	V	S	E	Y	E	Q	L	L	Q	F	H	V	A	T	Y	M	D	N	E	I	A	G	Q	P	Q	A	L	Q	K	S	G	R	P	L	K	S	I	R	A	R	L	K	G	K	E	G	R	L	R	G	N	L	M	G	K	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G			S	S	S	T	T															T	T		T	T		S	S						S	S	S	S											T		S	S	S	S	S	T	T	T	T	S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	D	F	S	A	R	T	V	I	T	G	D	P	N	L	S	L	D	E	L	G	V	P	R	S	I	A	K	T	L	T	Y	P	E	T	V	T	P	Y	N	I	Y	Q	L	Q	E	L	V	R	N	G	P	D	E	H	P	G	A	K	Y	I	I	R	D	T	G	E	R	I	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S										T	T	S		T	T	B		B							T	S						B			T	T	T												T	T	S	S	S								T	T			B			T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	R	Y	H	K	R	A	G	D	I	P	L	R	Y	G	W	R	V	E	R	H	I	R	D	G	D	V	V	I	F	N	R	Q	P	S	L	H	K	M	S	M	M	G	H	R	I	R	V	M	P	Y	S	T	F	R	L	N	L	S	V	T	S	P	Y	N	A	D	F	D	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T		S								S	S									S									S	S			S	G	G	G										S	S	S	S					G	G	G	S	G	G	G	T			S	S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	E	M	N	M	H	V	P	Q	S	E	E	T	R	A	E	I	Q	E	I	T	M	V	P	K	Q	I	V	S	P	Q	S	N	K	P	V	M	G	I	V	Q	D	T	L	A	G	V	R	K	F	S	L	R	D	N	F	L	T	R	N	A	V	M	N	I	M	L	W	V	P	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	T	T								T			T	T	T	T	S			T	T	T	T			S					T											S	T	T					T					G	G	G	G		S	S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	W	D	G	I	L	P	P	P	V	I	L	K	P	K	V	L	W	T	G	K	Q	I	L	S	L	I	I	P	K	G	I	N	L	I	R	D	D	D	K	Q	S	L	S	N	P	T	D	S	G	M	L	I	E	N	G	E	I	I	Y	G	V	V	D	K	K	T	V	G	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S					S	B		S	S	S					T	T					T	T	S		S	S	B							S	S			S	S		T	T	T		S					B	S								S					S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	Q	G	G	L	V	H	T	I	W	K	E	K	G	P	E	I	C	K	G	F	F	N	G	I	Q	R	V	V	N	Y	W	L	L	H	N	G	F	S	I	G	I	G	D	T	I	A	D	A	D	T	M	K	E	V	T	R	T	V	K	E	A	R	R	Q	V	A	E	C	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T						S	S	S	S	S		T	T	T																									G	G	G	G	S			S												T	T	T								T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	D	A	Q	H	N	R	L	K	P	E	P	G	M	T	L	R	E	S	F	E	A	K	V	S	R	I	L	N	Q	A	R	D	N	A	G	R	S	A	E	H	S	L	K	D	S	N	N	V	K	Q	M	V	A	A	G	S	K	G	S	F	I	N	I	S	Q	M	S	A	C	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	T						S	S			T	T																								T	T	S		S	S		T	T	T							S	S											T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	G	Q	Q	I	V	E	G	K	R	I	P	F	G	F	K	Y	R	T	L	P	H	F	P	K	D	D	D	S	P	E	S	R	G	F	I	E	N	S	Y	L	R	G	L	T	P	Q	E	F	F	F	H	A	M	A	G	R	E	G	L	I	D	T	A	V	K	T	A	E	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	T	T	S	S	S				S	T	T	S	S	S	T	T	S		S	S			S	T	T	T	S	S			S	S		T	T	T															T	T	T	T	T					T	T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	Y	I	Q	R	R	L	V	K	A	M	E	D	V	M	V	R	Y	D	G	T	V	R	N	A	M	G	D	I	I	Q	F	A	Y	G	E	D	G	L	D	A	T	L	V	E	Y	Q	V	F	D	S	L	R	L	S	T	K	Q	F	E	K	K	Y	R	I	D	L	M	E	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T					T	T	T					T	T	S					S	S	S	S	S	S		B		G	G	G							T	T	T	S							T	T	T	S				T	T	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	S	L	S	L	Y	M	E	N	S	I	E	N	D	S	S	V	Q	D	L	L	D	E	E	Y	T	Q	L	V	A	D	R	E	L	L	C	K	F	I	F	P	K	G	D	A	R	W	P	L	P	V	N	V	Q	R	I	I	Q	N	A	L	Q	I	F	H	L	E	A	K	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	T	S		S			T	T	S		S	S	T															T	T	S	S	S	S	S	S	S		S								S						T	T	T	T	T	T	T	S				T	T	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	T	D	L	L	P	S	D	I	I	N	G	L	N	E	L	I	A	K	L	T	I	F	R	G	S	D	R	I	T	R	D	V	Q	N	N	A	T	L	L	F	Q	I	L	L	R	S	K	F	A	V	K	R	V	I	M	E	Y	R	L	N	K	V	A	F	E	W	I	M	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T				S				S	T	T	T	T					T	S	S								T	T	S	S	S							S	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	V	E	A	R	F	Q	Q	A	V	V	S	P	G	E	M	V	G	T	L	A	A	Q	S	I	G	E	P	A	T	Q	M	T	L	N	T	F	H	Y	A	G	V	S	S	K	N	V	T	L	G	V	P	R	L	K	E	I	L	N	V	A	K	N	I	K	T	P	S	L	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	B			S	S																						T	T	S	S						S	S				S	G	G	G						T	T		S			S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	Y	L	M	P	W	I	A	A	N	M	D	L	A	K	N	V	Q	T	Q	I	E	H	T	T	L	S	T	V	T	S	A	T	E	I	H	Y	D	P	D	P	Q	D	T	V	I	E	E	D	K	D	F	V	E	A	F	F	A	I	P	D	E	E	V	E	E	N	L	Y	K	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S		S	S	S	T	T	T					T	T	S	S			S	S		S			S									S	T	T					S	S	S		S								T	T		S	S	T	T		S	S		S
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	S	P	W	L	L	R	L	E	L	D	R	A	K	M	L	D	K	K	L	S	M	S	D	V	A	G	K	I	A	E	S	F	E	R	D	L	F	T	I	W	S	E	D	N	A	D	K	L	I	I	R	C	R	I	I	R	D	D	D	R	K	A	E	D	D	D	N	M	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S	S	T	T	T	T							T	T	S	G	G	G	S	S	T	T	S								T	T		S	S											S						S	S				S
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	E	D	V	F	L	K	T	I	E	G	H	M	L	E	S	I	S	L	R	G	V	P	N	I	T	R	V	Y	M	M	E	H	K	I	V	R	Q	I	E	D	G	T	F	E	R	A	D	E	W	V	L	E	T	D	G	I	N	L	T	E	A	M	T	V	E	G	V	D	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S												T	T				S	S			T	T																S	S	S														S				S	T	T	T	S	S	S	S			T	T
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
Sequence	R	T	Y	S	N	S	F	V	E	I	L	Q	I	L	G	I	E	A	T	R	S	A	L	L	K	E	L	R	N	V	I	E	F	D	G	S	Y	V	N	Y	R	H	L	A	L	L	C	D	V	M	T	S	R	G	H	L	M	A	I	T	R	H	G	I	N	R	A	E	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T				S									S															T	T	S		S	S	S																T	S	S	S	S						T	T	S		S				S
	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470
Sequence	A	L	M	R	C	S	F	E	E	T	V	E	I	L	M	D	A	A	A	S	G	E	K	D	D	C	K	G	I	S	E	N	I	M	L	G	Q	L	A	P	M	G	T	G	A	F	D	I	Y	L	D	Q	D	M	L	M	N	Y	S	L	G	T	A	V	P	T	L	A	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S			T							G	G	G	T			B					S	T	T	G	G	G	T		S				S	S	T	T	S														S						S	G	G	G	G
	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.
Sequence	G	M	G	T	S	Q	L	P	E	G	A	G	T	P	Y	E	R	S	P	M	V	D	S	G	F	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		S	S				T	T		S	S				T	T