PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3d5cX_

Fold library id	PDB Header	Molecule	Title
c3d5cX_	PDB header: ribosome	Chain: X: PDB Molecule: peptide chain release factor 1;	PDBTitle: structural basis for translation termination on the 70s2 ribosome. this file contains the 30s subunit, release3 factor 1 (rf1), two trna, and mrna molecules of the second4 70s ribosome. the entire crystal structure contains two5 70s ribosomes as described in remark 400.

Links to external resources
Added to library: Tue Mar 16 14:19:21 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M L D K L D R L E E E Y R E L E A L L S D P E V L K D K G R Y Q S L S R R Y A E M G E V I G L I R E Y R K V L E D L E Q A E S L L D D P E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S T T T T S
T S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K E M A K A E R E A L L A R K E A L E K E L E R H L L P K D P M D E R D A I V E I R A G T G G E E A A L F A R D L F N M Y L R F A E E M G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
S S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E T E V L D S H P T D L G G F S K V V F E V R G P G A Y G T F K Y E S G V H R V Q R V P V T E T Q G R I H T S T A T V A V L P K A E E E D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S T T G G G
S
S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A L N M D E I R I D V M R A S G P G G Q G V N T T D S A V R V V H L P T G I M V T C Q D S R S Q I K N R E K A L M I L R S R L L E M K R A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
T T T T
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence E A E R L R K T R L A Q I G T G E R S E K I R T Y N F P Q S R V T D H R I G F T T H D L E G V L S G H L T P I L E A L K R A D Q E R Q L A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G G S
S S T T T T T T T T
T T T

. . . .

Sequence L A E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	L	D	K	L	D	R	L	E	E	E	Y	R	E	L	E	A	L	L	S	D	P	E	V	L	K	D	K	G	R	Y	Q	S	L	S	R	R	Y	A	E	M	G	E	V	I	G	L	I	R	E	Y	R	K	V	L	E	D	L	E	Q	A	E	S	L	L	D	D	P	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T										T	T	S	T	T	T	T	S																																					T	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	E	M	A	K	A	E	R	E	A	L	L	A	R	K	E	A	L	E	K	E	L	E	R	H	L	L	P	K	D	P	M	D	E	R	D	A	I	V	E	I	R	A	G	T	G	G	E	E	A	A	L	F	A	R	D	L	F	N	M	Y	L	R	F	A	E	E	M	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											S	T	T																S	S																							T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	T	E	V	L	D	S	H	P	T	D	L	G	G	F	S	K	V	V	F	E	V	R	G	P	G	A	Y	G	T	F	K	Y	E	S	G	V	H	R	V	Q	R	V	P	V	T	E	T	Q	G	R	I	H	T	S	T	A	T	V	A	V	L	P	K	A	E	E	E	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S	S										S	T	T						G	G	G		S									S	S		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	L	N	M	D	E	I	R	I	D	V	M	R	A	S	G	P	G	G	Q	G	V	N	T	T	D	S	A	V	R	V	V	H	L	P	T	G	I	M	V	T	C	Q	D	S	R	S	Q	I	K	N	R	E	K	A	L	M	I	L	R	S	R	L	L	E	M	K	R	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G										S																		T	T	T	T								S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	E	A	E	R	L	R	K	T	R	L	A	Q	I	G	T	G	E	R	S	E	K	I	R	T	Y	N	F	P	Q	S	R	V	T	D	H	R	I	G	F	T	T	H	D	L	E	G	V	L	S	G	H	L	T	P	I	L	E	A	L	K	R	A	D	Q	E	R	Q	L	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S		G	G	G	G	S		S	S					T	T	T	T					T	T	T	T										T	T	T
	.	.	.	.
Sequence	L	A	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S