Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	I	D	L	N	A	D	L	G	E	G	C	A	S	D	A	E	L	L	T	L	V	S	S	A	N	I	A	C	G	F	H	A	G	D	A	Q	I	M	Q	A	C	V	R	E	A	I	K	N	G	V	A	I	G	A	H	P	S	F
Secondary structure
SS confidence
Disorder		?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	D	R	E	N	F	G	R	S	A	M	Q	L	P	P	E	T	V	Y	A	Q	T	L	Y	Q	I	G	A	L	A	T	I	A	R	A	Q	G	G	V	M	R	H	V	K	P	H	G	M	L	Y	N	Q	A	A	K	E	A	Q	L	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	A	I	A	R	A	V	Y	A	C	D	P	A	L	I	L	V	G	L	A	G	S	E	L	I	R	A	G	K	Q	Y	G	L	T	T	R	E	E	V	F	A	D	R	G	Y	Q	A	D	G	S	L	V	P	R	S	Q	S	G	A	L
Secondary structure
SS confidence
Disorder																																																			?							?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	E	N	E	E	Q	A	L	A	Q	T	L	E	M	V	Q	H	G	R	V	K	S	I	T	G	E	W	A	T	V	A	A	Q	T	V	C	L	H	G	D	G	E	H	A	L	A	F	A	R	R	L	R	S	A	F	A	E	K	G	I
Secondary structure
SS confidence
Disorder																			?																																								?	?	?
Disorder confidence
		.	.	.	.
Sequence		V	V	A	A
Secondary structure
SS confidence
Disorder				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2dfa chain A domain 1 Region: 1 - 244 Aligned: 241 Modelled: 244 Confidence: 100.0% Identity: 46% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: LamB/YcsF-like Phyre2 PDB 1v6t chain A Region: 1 - 244 Aligned: 239 Modelled: 244 Confidence: 100.0% Identity: 43% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: LamB/YcsF-like Phyre2 PDB 2x5e chain A Region: 3 - 234 Aligned: 232 Modelled: 232 Confidence: 100.0% Identity: 39% PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa Phyre2 PDB 1xw8 chain A Region: 1 - 244 Aligned: 227 Modelled: 243 Confidence: 100.0% Identity: 95% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: LamB/YcsF-like Phyre2 PDB 2nly chain A domain 1 Region: 41 - 244 Aligned: 162 Modelled: 190 Confidence: 91.1% Identity: 16% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: Divergent polysaccharide deacetylase Phyre2 PDB 2c1i chain A Region: 2 - 244 Aligned: 169 Modelled: 179 Confidence: 89.5% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. Phyre2 PDB 1ny1 chain A Region: 2 - 244 Aligned: 175 Modelled: 186 Confidence: 87.4% Identity: 15% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 1tz9 chain A Region: 38 - 82 Aligned: 45 Modelled: 45 Confidence: 84.1% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: UxuA-like Phyre2 PDB 1w17 chain A Region: 2 - 244 Aligned: 177 Modelled: 184 Confidence: 79.9% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. Phyre2 PDB 2qv5 chain A Region: 41 - 243 Aligned: 164 Modelled: 177 Confidence: 65.7% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 Phyre2 PDB 1ur4 chain A Region: 36 - 138 Aligned: 99 Modelled: 99 Confidence: 65.4% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 2fvk chain A domain 2 Region: 36 - 161 Aligned: 93 Modelled: 93 Confidence: 62.4% Identity: 28% Fold: TIM beta/alpha-barrel Superfamily: Metallo-dependent hydrolases Family: Hydantoinase (dihydropyrimidinase), catalytic domain Phyre2 PDB 1e9z chain A Region: 71 - 102 Aligned: 32 Modelled: 32 Confidence: 58.9% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease Phyre2 PDB 1w8g chain A Region: 36 - 157 Aligned: 113 Modelled: 122 Confidence: 58.5% Identity: 12% PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs Phyre2 PDB 1tvl chain A Region: 42 - 240 Aligned: 142 Modelled: 142 Confidence: 58.1% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis Phyre2 PDB 1tvl chain A Region: 42 - 240 Aligned: 142 Modelled: 142 Confidence: 58.1% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Ssud-like monoxygenases Phyre2 PDB 3e0f chain A Region: 26 - 85 Aligned: 55 Modelled: 58 Confidence: 57.3% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent phosphoesterase; PDBTitle: crystal structure of a putative metal-dependent phosphoesterase2 (bad_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 a3 resolution Phyre2 PDB 3qxb chain B Region: 36 - 158 Aligned: 109 Modelled: 119 Confidence: 56.5% Identity: 15% PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution Phyre2 PDB 1e9y chain A domain 2 Region: 71 - 102 Aligned: 32 Modelled: 32 Confidence: 56.2% Identity: 25% Fold: Urease, gamma-subunit Superfamily: Urease, gamma-subunit Family: Urease, gamma-subunit Phyre2 PDB 1ejx chain A Region: 71 - 102 Aligned: 32 Modelled: 32 Confidence: 54.4% Identity: 22% Fold: Urease, gamma-subunit Superfamily: Urease, gamma-subunit Family: Urease, gamma-subunit Phyre2 1 d2dfaa1 2 d1v6ta_ 3 c2x5eA_ 4 d1xw8a_ 5 d2nlya1 6 c2c1iA_ 7 d1ny1a_ 8 d1tz9a_ 9 c1w17A_ 10 c2qv5A_ 11 d1ur4a_ 12 d2fvka2 13 c1e9zA_ 14 c1w8gA_ 15 c1tvlA_ 16 d1tvla_ 17 c3e0fA_ 18 c3qxbB_ 19 d1e9ya2 20 d1ejxa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2dfaa1 100.0 46 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 2 d1v6ta_ 100.0 43 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 3 c2x5eA_ 100.0 39 PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa 4 d1xw8a_ 100.0 95 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 5 d2nlya1 91.1 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase 6 c2c1iA_ 89.5 18 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. 7 d1ny1a_ 87.4 15 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 8 d1tz9a_ 84.1 16 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:UxuA-like 9 c1w17A_ 79.9 17 PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. 10 c2qv5A_ 65.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 11 d1ur4a_ 65.4 22 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 12 d2fvka2 62.4 28 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase), catalytic domain 13 c1e9zA_ 58.9 25 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 14 c1w8gA_ 58.5 12 PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs 15 c1tvlA_ 58.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis 16 d1tvla_ 58.1 21 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Ssud-like monoxygenases 17 c3e0fA_ 57.3 18 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent phosphoesterase; PDBTitle: crystal structure of a putative metal-dependent phosphoesterase2 (bad_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 a3 resolution 18 c3qxbB_ 56.5 15 PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution 19 d1e9ya2 56.2 25 Fold:Urease, gamma-subunit Superfamily:Urease, gamma-subunit Family:Urease, gamma-subunit 20 d1ejxa_ 54.4 22 Fold:Urease, gamma-subunit Superfamily:Urease, gamma-subunit Family:Urease, gamma-subunit 21 d4ubpa_ not modelled 52.9 19 Fold:Urease, gamma-subunit Superfamily:Urease, gamma-subunit Family:Urease, gamma-subunit 22 c3tsuA_ not modelled 51.3 23 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 23 c1y10C_ not modelled 50.0 11 PDB header:lyase Chain: C: PDB Molecule:hypothetical protein rv1264/mt1302; PDBTitle: mycobacterial adenylyl cyclase rv1264, holoenzyme, inhibited state 24 c2o7jA_ not modelled 47.5 13 PDB header:sugar binding protein Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose 25 c3noyA_ not modelled 45.8 25 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: crystal structure of ispg (gcpe) 26 d2nu7b1 not modelled 43.1 17 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 27 c3bdkB_ not modelled 43.0 26 PDB header:lyase Chain: B: PDB Molecule:d-mannonate dehydratase; PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue 28 c2hk1D_ not modelled 42.5 13 PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose 29 d1hara_ not modelled 42.0 7 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 30 c2e67D_ not modelled 38.5 23 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein tthb029; PDBTitle: crystal structure of the hypothetical protein tthb029 from thermus2 thermophilus hb8 31 c3epmB_ not modelled 38.0 20 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiamine biosynthesis protein thic; PDBTitle: crystal structure of caulobacter crescentus thic 32 c2ou4C_ not modelled 37.3 15 PDB header:isomerase Chain: C: PDB Molecule:d-tagatose 3-epimerase; PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii 33 d1xima_ not modelled 36.8 28 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 34 c2pfsA_ not modelled 35.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 35 d1nq6a_ not modelled 34.9 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 36 c3hgmD_ not modelled 33.7 14 PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata 37 d1qt1a_ not modelled 33.3 23 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 38 d1qyia_ not modelled 31.7 12 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein MW1667 (SA1546) 39 d1eucb1 not modelled 31.7 18 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 40 c3qgaD_ not modelled 31.0 23 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 41 c3mvnA_ not modelled 29.1 13 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp 42 d1v6wa2 not modelled 28.2 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 43 d1xlma_ not modelled 27.6 19 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 44 d1ulza2 not modelled 26.2 25 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 45 d2j9ga2 not modelled 25.7 25 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 46 c3c6cA_ not modelled 25.4 14 PDB header:hydrolase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution 47 c3louB_ not modelled 24.8 23 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 48 d2c1ia1 not modelled 24.7 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 49 c1k97A_ not modelled 24.6 16 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 50 c3bzjA_ not modelled 24.5 16 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 51 d1ur1a_ not modelled 24.0 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 52 d2glka1 not modelled 23.6 24 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 53 c3sg0A_ not modelled 23.5 12 PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 54 c3mr7B_ not modelled 23.1 17 PDB header:hydrolase Chain: B: PDB Molecule:adenylate/guanylate cyclase/hydrolase, alpha/beta fold PDBTitle: crystal structure of adenylate/guanylate cyclase/hydrolase from2 silicibacter pomeroyi 55 d1zvpa2 not modelled 22.1 27 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 56 c3chvA_ not modelled 21.7 23 PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution 57 c3ugsB_ not modelled 21.4 11 PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni 58 c3n2aA_ not modelled 21.4 17 PDB header:ligase Chain: A: PDB Molecule:bifunctional folylpolyglutamate synthase/dihydrofolate PDBTitle: crystal structure of bifunctional folylpolyglutamate2 synthase/dihydrofolate synthase from yersinia pestis co92 59 c2dclB_ not modelled 21.1 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503; PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3 60 d1uasa2 not modelled 21.0 8 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 61 d1hl9a2 not modelled 20.8 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Putative alpha-L-fucosidase, catalytic domain 62 c3tpaA_ not modelled 20.4 9 PDB header:heme binding protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: structure of hbpa2 from haemophilus parasuis 63 c3o1lB_ not modelled 20.1 14 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 64 d1abra_ not modelled 20.1 15 Fold:Ribosome inactivating proteins (RIP) Superfamily:Ribosome inactivating proteins (RIP) Family:Plant cytotoxins 65 c1ygyA_ not modelled 20.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 66 c2i7xA_ not modelled 19.9 21 PDB header:rna binding protein, protein binding Chain: A: PDB Molecule:protein cft2; PDBTitle: structure of yeast cpsf-100 (ydh1p) 67 d2i7xa1 not modelled 19.9 21 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:beta-CASP RNA-metabolising hydrolases 68 d1st6a4 not modelled 19.8 25 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 69 c3cpgA_ not modelled 19.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an unknown protein from bifidobacterium2 adolescentis 70 d2gc6a1 not modelled 19.7 17 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:Folylpolyglutamate synthetase, C-terminal domain 71 c3fh0A_ not modelled 19.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase 72 c3t0nA_ not modelled 19.2 10 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal; PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5 73 c2fvhB_ not modelled 18.9 29 PDB header:hydrolase Chain: B: PDB Molecule:urease gamma subunit; PDBTitle: crystal structure of rv1848, a urease gamma subunit urea (urea2 amidohydrolase), from mycobacterium tuberculosis 74 d1pb5a_ not modelled 18.6 60 Fold:Notch domain Superfamily:Notch domain Family:Notch domain 75 c1w96B_ not modelled 18.6 11 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase; PDBTitle: crystal structure of biotin carboxylase domain of acetyl-2 coenzyme a carboxylase from saccharomyces cerevisiae in3 complex with soraphen a 76 c2xzmO_ not modelled 18.4 15 PDB header:ribosome Chain: O: PDB Molecule:rps13e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 77 d1bxca_ not modelled 18.3 28 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 78 c3la4A_ not modelled 18.2 31 PDB header:hydrolase Chain: A: PDB Molecule:urease; PDBTitle: crystal structure of the first plant urease from jack bean (canavalia2 ensiformis) 79 d1i60a_ not modelled 18.0 17 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 80 c3sdoB_ not modelled 17.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase; PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei 81 d1st6a3 not modelled 17.8 15 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 82 c3dddA_ not modelled 17.7 11 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of a putative acetyltransferase (np_142035.1) from2 pyrococcus horikoshii at 2.25 a resolution 83 c1kh2D_ not modelled 17.5 24 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 84 c3civA_ not modelled 17.5 15 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-1,4-mannanase; PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius 85 c3ue9A_ not modelled 17.4 18 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase (ampsase) (pura) from2 burkholderia thailandensis 86 d1nfpa_ not modelled 17.0 19 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 87 d2fdra1 not modelled 16.9 13 Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like 88 d1o94c_ not modelled 16.5 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 89 d1efpb_ not modelled 16.4 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 90 c3t66A_ not modelled 16.1 27 PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans 91 c3ly1C_ not modelled 16.0 19 PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution 92 d2c71a1 not modelled 15.9 21 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 93 d1gvia2 not modelled 15.5 30 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 94 d1ztwa1 not modelled 15.4 11 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 95 d2pw6a1 not modelled 15.4 20 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 96 c3elyA_ not modelled 15.2 18 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: wesselsbron virus methyltransferase in complex with adohcy 97 d8ruca2 not modelled 15.1 24 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 98 c2c2xB_ not modelled 14.8 20 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase- PDBTitle: three dimensional structure of bifunctional2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase3 from mycobacterium tuberculosis 99 c2grvC_ not modelled 14.7 14 PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0