PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qgaD_

Fold library id	PDB Header	Molecule	Title
c3qgaD_	PDB header: hydrolase	Chain: D: PDB Molecule: fusion of urease beta and gamma subunits;	PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae

Links to external resources
Added to library: Sat Aug 13 09:50:08 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K L T P K E Q E K F L L Y Y A G E V A R K R K E E G L K L N Q P E A I A Y I S A H I M D E A R R G K K T V A Q L M E E C V H F L K K D E V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B
T
S
T T T S B
G G G B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P G V G N M V P D L G V E A N F P D G T K L V T V N W P I E P D D F K A G E I K F A S D K D I E L N A G K E I T E L K V T N K G P K S L H V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T S
B
S
T T
S
S S
T T T T
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G S H F H F F E A N R A L E F D R E K A Y G K R L D I P S G N T L R I G A G E T K T V H L I P I G G S K K I I G M N G L L N G I A D D L H K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
G G G S
T T S
G G G G T T
S
T T
T T
S T T
S T T S S
S

. . . . . . . . . 220 . . . .

Sequence Q K A L E K A K H H G F I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	L	T	P	K	E	Q	E	K	F	L	L	Y	Y	A	G	E	V	A	R	K	R	K	E	E	G	L	K	L	N	Q	P	E	A	I	A	Y	I	S	A	H	I	M	D	E	A	R	R	G	K	K	T	V	A	Q	L	M	E	E	C	V	H	F	L	K	K	D	E	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									T	T			B																				T		S									T	T	T	S	B		G	G	G	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	G	V	G	N	M	V	P	D	L	G	V	E	A	N	F	P	D	G	T	K	L	V	T	V	N	W	P	I	E	P	D	D	F	K	A	G	E	I	K	F	A	S	D	K	D	I	E	L	N	A	G	K	E	I	T	E	L	K	V	T	N	K	G	P	K	S	L	H	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T						S									T	T									S		B				S			T	T					S		S	S				T	T	T	T												S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	S	H	F	H	F	F	E	A	N	R	A	L	E	F	D	R	E	K	A	Y	G	K	R	L	D	I	P	S	G	N	T	L	R	I	G	A	G	E	T	K	T	V	H	L	I	P	I	G	G	S	K	K	I	I	G	M	N	G	L	L	N	G	I	A	D	D	L	H	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S		G	G	G	S		T	T			S		G	G	G	G	T	T					S		T	T							T	T											S	T	T					S	T	T	S	S						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	Q	K	A	L	E	K	A	K	H	H	G	F	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S