PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1w8gA_

Fold library id	PDB Header	Molecule	Title
c1w8gA_	PDB header: plp-binding protein	Chain: A: PDB Molecule: hypothetical upf0001 protein yggs;	PDBTitle: crystal structure of e. coli k-12 yggs

Links to external resources
Added to library: Tue Mar 16 13:39:04 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D I A H N L A Q V R D K I S A A A T R C G R S P E E I T L L A V S K T K P A S A I A E A I D A G Q R Q F G E N Y V Q E G V D K I R H F Q E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G
T T S
T T
S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G V T G L E W H F I G P L Q S N K S R L V A E H F D W C H T I D R L R I A T R L N D Q R P A E L P P L N V L I Q I N I S D E N S K S G I Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S
G G G
S
S S
T T S
S
T T
S B
G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A E L D E L A A A V A E L P R L R L R G L M A I P A P E S E Y V R Q F E V A R Q M A V A F A G L K T R Y P H I D T L S L G M S D D M E A A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G T
T T
S T T
G G G

. . . . . . . . . 220 . . . . . .

Sequence A A G S T M V R I G T A I F G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	I	A	H	N	L	A	Q	V	R	D	K	I	S	A	A	A	T	R	C	G	R	S	P	E	E	I	T	L	L	A	V	S	K	T	K	P	A	S	A	I	A	E	A	I	D	A	G	Q	R	Q	F	G	E	N	Y	V	Q	E	G	V	D	K	I	R	H	F	Q	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T			G	G	G								T	T	S											T	T							S	S														T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	V	T	G	L	E	W	H	F	I	G	P	L	Q	S	N	K	S	R	L	V	A	E	H	F	D	W	C	H	T	I	D	R	L	R	I	A	T	R	L	N	D	Q	R	P	A	E	L	P	P	L	N	V	L	I	Q	I	N	I	S	D	E	N	S	K	S	G	I	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			S							S				G	G	G									S							S											S		T	T	S												S		T	T				S	B		G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	E	L	D	E	L	A	A	A	V	A	E	L	P	R	L	R	L	R	G	L	M	A	I	P	A	P	E	S	E	Y	V	R	Q	F	E	V	A	R	Q	M	A	V	A	F	A	G	L	K	T	R	Y	P	H	I	D	T	L	S	L	G	M	S	D	D	M	E	A	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G										T		T	T																																					S	T	T									G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	A	A	G	S	T	M	V	R	I	G	T	A	I	F	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T		S					S