PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1e9zA_

Fold library id	PDB Header	Molecule	Title
c1e9zA_	PDB header: hydrolase	Chain: A: PDB Molecule: urease subunit alpha;	PDBTitle: crystal structure of helicobacter pylori urease

Links to external resources
Added to library: Tue Mar 16 14:27:25 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K L T P K E L D K L M L H Y A G E L A K K R K E K G I K L N Y V E A V A L I S A H I M E E A R A G K K T A A E L M Q E G R T L L K P D D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
B
T T
S
G G G S
T T T B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M D G V A S M I H E V G I E A M F P D G T K L V T V H T P I E A N G K L V P G E L F L K N E D I T I N E G K K A V S V K V K N V G D R P V Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T
S
S S
T T
S S
T T S S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I G S H F H F F E V N R C L D F D R E K T F G K R L D I A A G T A V R F E P G E E K S V E L I D I G G N R R I F G F N A L V D R Q A D N E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
G G G S
T T S
T T
S S T T
T T
T T
S T T S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . .

Sequence K K I A L H R A K E R G F H G A K S D D N Y V K T I K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	L	T	P	K	E	L	D	K	L	M	L	H	Y	A	G	E	L	A	K	K	R	K	E	K	G	I	K	L	N	Y	V	E	A	V	A	L	I	S	A	H	I	M	E	E	A	R	A	G	K	K	T	A	A	E	L	M	Q	E	G	R	T	L	L	K	P	D	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T	S			B																			T	T		S									G	G	G	S			T	T	T	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	D	G	V	A	S	M	I	H	E	V	G	I	E	A	M	F	P	D	G	T	K	L	V	T	V	H	T	P	I	E	A	N	G	K	L	V	P	G	E	L	F	L	K	N	E	D	I	T	I	N	E	G	K	K	A	V	S	V	K	V	K	N	V	G	D	R	P	V	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T						S									T	T											S				S	S			T	T						S	S				T	T	S	S												S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	G	S	H	F	H	F	F	E	V	N	R	C	L	D	F	D	R	E	K	T	F	G	K	R	L	D	I	A	A	G	T	A	V	R	F	E	P	G	E	E	K	S	V	E	L	I	D	I	G	G	N	R	R	I	F	G	F	N	A	L	V	D	R	Q	A	D	N	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S		G	G	G	S		T	T			S						T	T					S	S	T	T							T	T												T	T					S	T	T	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence	K	K	I	A	L	H	R	A	K	E	R	G	F	H	G	A	K	S	D	D	N	Y	V	K	T	I	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T		T	T					S	S					S