Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP06846
DateThu Jan 5 10:59:26 GMT 2012
Unique Job ID1fc5d493bcf8c8ca

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1zvvA_
Top template information
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
Confidence and coverage
Confidence:100.0% Coverage: 97%
318 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTSSARKLQTGAV
Secondary structure 





















SS confidence 



























































Disorder  ???




















???????






















??????
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   .........70.........80.........90.........100.........110.........120
Sequence  NQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTNCYEHSGLPDIKNVTGILI
Secondary structure 























SS confidence 



























































Disorder  ?






?

????






























???


?






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   .........130.........140.........150.........160.........170.........180
Sequence  VGKPTPALRAAASALTDNICFIDFHEPGSGYDAVDIDLARISKEIIDFYINQGVNRIGFI
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   .........190.........200.........210.........220.........230.........240
Sequence  GGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSSSSGYELAKQMLAREDYPKALFV
Secondary structure 























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Disorder 


??
??








































?









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   .........250.........260.........270.........280.........290.........300
Sequence  ASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLV
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   .........310.........320.......
Sequence  YEKARDGRALPLLVFVPSKLKLRGTTR
Secondary structure 











SS confidence 


























Disorder 



??????











?????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1zvv chain A

3D model

Region: 1 - 327
Aligned: 318
Modelled: 327
Confidence: 100.0%
Identity: 24%
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex

Phyre2

PDB 3kjx chain D

3D model

Region: 1 - 327
Aligned: 318
Modelled: 319
Confidence: 100.0%
Identity: 24%
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi

Phyre2

PDB 1bdh chain A

3D model

Region: 3 - 327
Aligned: 316
Modelled: 318
Confidence: 100.0%
Identity: 27%
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex

Phyre2

PDB 3h5t chain A

3D model

Region: 2 - 326
Aligned: 306
Modelled: 311
Confidence: 100.0%
Identity: 20%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum

Phyre2

PDB 3c3k chain A

3D model

Region: 59 - 327
Aligned: 258
Modelled: 269
Confidence: 100.0%
Identity: 23%
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes

Phyre2

PDB 2iks chain A

3D model

Region: 58 - 327
Aligned: 262
Modelled: 270
Confidence: 100.0%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:dna-binding transcriptional dual regulator;
PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12

Phyre2

PDB 2nzu chain G domain 1

3D model

Region: 58 - 327
Aligned: 263
Modelled: 263
Confidence: 100.0%
Identity: 19%
Fold: Periplasmic binding protein-like I
Superfamily: Periplasmic binding protein-like I
Family: L-arabinose binding protein-like

Phyre2

PDB 3k4h chain A

3D model

Region: 59 - 327
Aligned: 267
Modelled: 269
Confidence: 100.0%
Identity: 20%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98

Phyre2

PDB 2o20 chain H

3D model

Region: 58 - 327
Aligned: 262
Modelled: 263
Confidence: 100.0%
Identity: 16%
PDB header:transcription
Chain: H: PDB Molecule:catabolite control protein a;
PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis

Phyre2

PDB 3qk7 chain C

3D model

Region: 59 - 326
Aligned: 265
Modelled: 268
Confidence: 100.0%
Identity: 15%
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulators;
PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001

Phyre2

PDB 3cs3 chain A

3D model

Region: 56 - 327
Aligned: 262
Modelled: 272
Confidence: 100.0%
Identity: 15%
PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis

Phyre2

PDB 3k9c chain A

3D model

Region: 61 - 327
Aligned: 256
Modelled: 267
Confidence: 100.0%
Identity: 19%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family protein;
PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.

Phyre2

PDB 3dbi chain A

3D model

Region: 59 - 327
Aligned: 263
Modelled: 264
Confidence: 100.0%
Identity: 20%
PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate

Phyre2

PDB 3clk chain B

3D model

Region: 75 - 327
Aligned: 253
Modelled: 253
Confidence: 100.0%
Identity: 20%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcription regulator;
PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum

Phyre2

PDB 3e3m chain A

3D model

Region: 61 - 327
Aligned: 255
Modelled: 267
Confidence: 100.0%
Identity: 18%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi

Phyre2

PDB 3bbl chain A

3D model

Region: 65 - 326
Aligned: 262
Modelled: 261
Confidence: 100.0%
Identity: 20%
PDB header:regulatory protein
Chain: A: PDB Molecule:regulatory protein of laci family;
PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans

Phyre2

PDB 3hcw chain B

3D model

Region: 57 - 327
Aligned: 267
Modelled: 269
Confidence: 100.0%
Identity: 17%
PDB header:rna binding protein
Chain: B: PDB Molecule:maltose operon transcriptional repressor;
PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus

Phyre2

PDB 3d8u chain A

3D model

Region: 61 - 326
Aligned: 252
Modelled: 259
Confidence: 100.0%
Identity: 19%
PDB header:transcription regulator
Chain: A: PDB Molecule:purr transcriptional regulator;
PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633

Phyre2

PDB 3h5o chain B

3D model

Region: 61 - 326
Aligned: 258
Modelled: 253
Confidence: 100.0%
Identity: 19%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator gntr;
PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum

Phyre2

PDB 3brq chain A

3D model

Region: 60 - 326
Aligned: 257
Modelled: 267
Confidence: 100.0%
Identity: 21%
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator ascg;
PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg

Phyre2
1

c1zvvA_
2

c3kjxD_
3

c1bdhA_
4

c3h5tA_
5

c3c3kA_
6

c2iksA_
7

d2nzug1
8

c3k4hA_
9

c2o20H_
10

c3qk7C_
11

c3cs3A_
12

c3k9cA_
13

c3dbiA_
14

c3clkB_
15

c3e3mA_
16

c3bblA_
17

c3hcwB_
18

c3d8uA_
19

c3h5oB_
20

c3brqA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1zvvA_



100.0 24 PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
2c3kjxD_



100.0 24 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi
3c1bdhA_



100.0 27 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
4c3h5tA_



100.0 20 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
5c3c3kA_



100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes
6c2iksA_



100.0 16 PDB header:transcription
Chain: A: PDB Molecule:dna-binding transcriptional dual regulator;
PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12
7d2nzug1



100.0 19 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
8c3k4hA_



100.0 20 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98
9c2o20H_



100.0 16 PDB header:transcription
Chain: H: PDB Molecule:catabolite control protein a;
PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis
10c3qk7C_



100.0 15 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulators;
PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001
11c3cs3A_



100.0 15 PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis
12c3k9cA_



100.0 19 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family protein;
PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.
13c3dbiA_



100.0 20 PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate
14c3clkB_



100.0 20 PDB header:transcription regulator
Chain: B: PDB Molecule:transcription regulator;
PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum
15c3e3mA_



100.0 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi
16c3bblA_



100.0 20 PDB header:regulatory protein
Chain: A: PDB Molecule:regulatory protein of laci family;
PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans
17c3hcwB_



100.0 17 PDB header:rna binding protein
Chain: B: PDB Molecule:maltose operon transcriptional repressor;
PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus
18c3d8uA_



100.0 19 PDB header:transcription regulator
Chain: A: PDB Molecule:purr transcriptional regulator;
PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633
19c3h5oB_



100.0 19 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator gntr;
PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum
20c3brqA_



100.0 21 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator ascg;
PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg
21c3kkeA_



not modelled 100.0 19 PDB header:transcription regulator
Chain: A: PDB Molecule:laci family transcriptional regulator;
PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis
22c2rgyA_



not modelled 100.0 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum
23c3ctpB_



not modelled 100.0 18 PDB header:transcription regulator
Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose
24c3mizB_



not modelled 100.0 20 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator protein, laci
PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli
25c3huuC_



not modelled 100.0 14 PDB header:transcription regulator
Chain: C: PDB Molecule:transcription regulator like protein;
PDBTitle: crystal structure of transcription regulator like protein from2 staphylococcus haemolyticus
26c3egcF_



not modelled 100.0 18 PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative ribose operon repressor;
PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis
27c2h0aA_



not modelled 100.0 20 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus
28d1tlfa_



not modelled 100.0 20 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
29c3o74A_



not modelled 100.0 14 PDB header:transcription
Chain: A: PDB Molecule:fructose transport system repressor frur;
PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida
30c3gv0A_



not modelled 100.0 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens
31c3bilA_



not modelled 100.0 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable laci-family transcriptional regulator;
PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum
32c3jy6B_



not modelled 100.0 14 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis
33c3g85A_



not modelled 100.0 23 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (laci family);
PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum
34c3hs3A_



not modelled 100.0 17 PDB header:transcription regulator
Chain: A: PDB Molecule:ribose operon repressor;
PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus
35d1dbqa_



not modelled 100.0 26 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
36c1jyeA_



not modelled 100.0 19 PDB header:transcription
Chain: A: PDB Molecule:lactose operon repressor;
PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution
37d1jyea_



not modelled 100.0 19 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
38c2ioyB_



not modelled 100.0 16 PDB header:sugar binding protein
Chain: B: PDB Molecule:periplasmic sugar-binding protein;
PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein
39c3gybB_



not modelled 100.0 22 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulators (laci-family
PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum
40c2qu7B_



not modelled 100.0 12 PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus
41c3jvdA_



not modelled 100.0 19 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulators;
PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum
42d1jx6a_



not modelled 100.0 16 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
43c2fn9A_



not modelled 100.0 17 PDB header:sugar binding protein
Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein;
PDBTitle: thermotoga maritima ribose binding protein unliganded form
44d2dria_



not modelled 100.0 15 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
45c3l6uA_



not modelled 100.0 15 PDB header:transport protein
Chain: A: PDB Molecule:abc-type sugar transport system periplasmic
PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum
46d1guda_



not modelled 99.9 19 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
47d1byka_



not modelled 99.9 13 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
48c3ksmA_



not modelled 99.9 14 PDB header:transport protein
Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component;
PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis
49c3e61A_



not modelled 99.9 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon;
PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus
50c3brsA_



not modelled 99.9 15 PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans
51d8abpa_



not modelled 99.9 14 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
52c2vk2A_



not modelled 99.9 20 PDB header:transport protein
Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq;
PDBTitle: crystal structure of a galactofuranose binding protein
53c3g1wB_



not modelled 99.9 15 PDB header:transport protein
Chain: B: PDB Molecule:sugar abc transporter;
PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans
54c3l49D_



not modelled 99.9 15 PDB header:transport protein
Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic
PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1
55c3ma0A_



not modelled 99.9 12 PDB header:sugar binding protein
Chain: A: PDB Molecule:d-xylose-binding periplasmic protein;
PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli
56c3gbvB_



not modelled 99.9 12 PDB header:transcription regulator
Chain: B: PDB Molecule:putative laci-family transcriptional regulator;
PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis
57c3h75A_



not modelled 99.9 14 PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic sugar-binding domain protein;
PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens
58c2rjoA_



not modelled 99.9 14 PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans
59c2qvcC_



not modelled 99.9 12 PDB header:transport protein
Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding
PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima
60c2x7xA_



not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: fructose binding periplasmic domain of hybrid two component2 system bt1754
61d1gcaa_



not modelled 99.9 15 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
62c3rotA_



not modelled 99.9 11 PDB header:transport protein
Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein;
PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila
63d2fvya1



not modelled 99.9 14 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
64d1tjya_



not modelled 99.8 8 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
65c3o1hB_



not modelled 99.8 13 PDB header:signaling protein
Chain: B: PDB Molecule:periplasmic protein tort;
PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
66c3d02A_



not modelled 99.8 12 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative laci-type transcriptional regulator;
PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution
67d2bjca1



not modelled 99.7 37 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
68d1qpza1



not modelled 99.7 41 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
69d2hsga1



not modelled 99.7 49 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
70d1efaa1



not modelled 99.6 36 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
71d1uxda_



not modelled 99.6 29 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
72c2qh8A_



not modelled 99.6 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961
73c3lftA_



not modelled 99.6 14 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a
74d1lcda_



not modelled 99.6 38 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
75d1uxca_



not modelled 99.6 29 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
76c2hqbA_



not modelled 99.5 10 PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator of comk gene;
PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
77c2lcvA_



not modelled 99.5 41 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
78c2fqxA_



not modelled 99.5 14 PDB header:transport protein
Chain: A: PDB Molecule:membrane lipoprotein tmpc;
PDBTitle: pnra from treponema pallidum complexed with guanosine
79c2l8nA_



not modelled 99.5 41 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
80c3s99A_



not modelled 98.7 9 PDB header:lipid binding protein
Chain: A: PDB Molecule:basic membrane lipoprotein;
PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak
81c3trbA_



not modelled 96.1 16 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
82c3cecA_



not modelled 96.0 22 PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
83c2ebyA_



not modelled 95.8 19 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
84c1u78A_



not modelled 95.8 10 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
85c2bnoA_



not modelled 95.6 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
86c3t76A_



not modelled 95.6 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
87c1y9qA_



not modelled 95.6 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
88c3eusB_



not modelled 95.4 14 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
89d2a6ca1



not modelled 95.4 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
90d2ofya1



not modelled 95.3 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
91c3b7hA_



not modelled 95.3 18 PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
92d1nera_



not modelled 95.3 26 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
93d2icta1



not modelled 95.2 19 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
94d2b5aa1



not modelled 95.2 24 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
95c3bs3A_



not modelled 95.1 22 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
96d1rioa_



not modelled 95.1 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
97c2o3fC_



not modelled 95.1 23 PDB header:transcription
Chain: C: PDB Molecule:putative hth-type transcriptional regulator ybbh;
PDBTitle: structural genomics, the crystal structure of the n-2 terminal domain of the putative transcriptional regulator3 ybbh from bacillus subtilis subsp. subtilis str. 168.
98c2o38A_



not modelled 95.1 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
99d2o38a1



not modelled 95.1 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
100d1adra_



not modelled 95.0 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
101d2o3fa1



not modelled 95.0 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:RpiR-like
102d1utxa_



not modelled 95.0 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
103d1y9qa1



not modelled 95.0 22 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
104c3eetA_



not modelled 94.8 22 PDB header:transcription regulator
Chain: A: PDB Molecule:putative gntr-family transcriptional regulator;
PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator
105d1y7ya1



not modelled 94.8 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
106c3neuA_



not modelled 94.8 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262
107c3clcC_



not modelled 94.8 16 PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
108c1b0nA_



not modelled 94.8 18 PDB header:transcription regulator
Chain: A: PDB Molecule:protein (sinr protein);
PDBTitle: sinr protein/sini protein complex
109c2kpjA_



not modelled 94.7 19 PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
110c3f52A_



not modelled 94.7 22 PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
111c3f8mA_



not modelled 94.7 26 PDB header:transcription
Chain: A: PDB Molecule:gntr-family protein transcriptional regulator;
PDBTitle: crystal structure of phnf from mycobacterium smegmatis
112d1x57a1



not modelled 94.6 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:EDF1-like
113d2r1jl1



not modelled 94.6 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
114c3op9A_



not modelled 94.6 22 PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
115d1lmb3_



not modelled 94.6 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
116c3omtA_



not modelled 94.6 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
117d1b0na2



not modelled 94.5 21 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
118c3iwfA_



not modelled 94.5 20 PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
119c2ef8A_



not modelled 94.4 18 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
120c2w48D_



not modelled 94.3 43 PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0