Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ46814
DateThu Jan 5 12:34:41 GMT 2012
Unique Job ID1b2b8a1148cebf2a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1wygA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
Confidence and coverage
Confidence:100.0% Coverage: 92%
880 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIIHFTLNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFNGNIVNASL
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Disorder  ?


























































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   .........70.........80.........90.........100.........110.........120
Sequence  LIAAQLEKADIRTAESLGKWNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDRIAAPT
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???




































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   .........130.........140.........150.........160.........170.........180
Sequence  REEIDDALSGLFSRDAGWQQYYQVIELAVARKNNPQATIDIAPTFRDDLEVIGKHYPKTD
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??
?




?





?












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   .........190.........200.........210.........220.........230.........240
Sequence  AAKMVQAKPCYVEDRVTADACVIKMLRSPHAHALITHLDVSKAEALPGVVHVITHLNCPD
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   .........250.........260.........270.........280.........290.........300
Sequence  IYYTPGGQSAPEPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEYEVLKPV
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Disorder 



??????
?















































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   .........310.........320.........330.........340.........350.........360
Sequence  MSIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAAS
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???????????????????????????
?????????





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   .........370.........380.........390.........400.........410.........420
Sequence  IHGHIGDMDKGFADADVIIERTYNSTQAQQCPTETHICFTRMDGDRLVIHASTQVPWHLR
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   .........430.........440.........450.........460.........470.........480
Sequence  RQVARLVGMKQHKVHVIKERVGGGFGSKQDILLEEVCAWATCVTGRPVLFRYTREEEFIA
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   .........490.........500.........510.........520.........530.........540
Sequence  NTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPALSLPLYPCDNVD
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   .........550.........560.........570.........580.........590.........600
Sequence  FQVTTYYSNICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKI
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   .........610.........620.........630.........640.........650.........660
Sequence  LGAIGEGKAPTSVPSAASCALEEILRQGREMIQWSSPKPQNGDWHIGRGVAIIMQKSGIP
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?





























???????















?
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   .........670.........680.........690.........700.........710.........720
Sequence  DIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHAL
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???
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   .........730.........740.........750.........760.........770.........780
Sequence  FDKGAYASSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVS
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   .........790.........800.........810.........820.........830.........840
Sequence  FGDIAHKGETGTGFGSLVGTGSYITPDFAFPYGANFAEVAVNTRTGEIRLDKFYALLDCG
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   .........850.........860.........870.........880.........890.........900
Sequence  TPVNPELALGQIYGATLRAIGHSMSEEIIYDAEGHPLTRDLRSYGAPKIGDIPRDFRAVL
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   .........910.........920.........930.........940.........950......
Sequence  VPSDDKVGPFGAKSISEIGVNGAAPAIATAIHDACGIWLREWHFTPEKILTALEKI
Secondary structure 

























SS confidence 























































Disorder 





???











































???
Disorder confidence 























































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1wyg chain A

3D model

Region: 3 - 955
Aligned: 880
Modelled: 896
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)

Phyre2

PDB 1vlb chain A

3D model

Region: 1 - 954
Aligned: 888
Modelled: 893
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a

Phyre2

PDB 1dgj chain A

3D model

Region: 1 - 953
Aligned: 884
Modelled: 889
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774

Phyre2

PDB 1sb3 chain D

3D model

Region: 171 - 955
Aligned: 730
Modelled: 750
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica

Phyre2

PDB 1ffv chain B

3D model

Region: 169 - 955
Aligned: 760
Modelled: 765
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava

Phyre2

PDB 1n62 chain E

3D model

Region: 167 - 955
Aligned: 751
Modelled: 755
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state

Phyre2

PDB 1t3q chain B

3D model

Region: 168 - 955
Aligned: 738
Modelled: 740
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: B: PDB Molecule:quinoline 2-oxidoreductase large subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86

Phyre2

PDB 2w54 chain F

3D model

Region: 171 - 955
Aligned: 727
Modelled: 741
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: F: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase from2 rhodobacter capsulatus in complex with bound inhibitor3 pterin-6-aldehyde

Phyre2

PDB 3eub chain L

3D model

Region: 171 - 955
Aligned: 713
Modelled: 733
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine

Phyre2

PDB 1rm6 chain A domain 2

3D model

Region: 301 - 955
Aligned: 606
Modelled: 619
Confidence: 100.0%
Identity: 30%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1n62 chain B domain 2

3D model

Region: 301 - 955
Aligned: 620
Modelled: 621
Confidence: 100.0%
Identity: 24%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1ffv chain B domain 2

3D model

Region: 305 - 955
Aligned: 627
Modelled: 629
Confidence: 100.0%
Identity: 25%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1jro chain B domain 2

3D model

Region: 298 - 955
Aligned: 606
Modelled: 615
Confidence: 100.0%
Identity: 27%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1t3q chain B domain 2

3D model

Region: 358 - 955
Aligned: 584
Modelled: 598
Confidence: 100.0%
Identity: 27%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1v97 chain A domain 5

3D model

Region: 300 - 955
Aligned: 591
Modelled: 611
Confidence: 100.0%
Identity: 25%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1vlb chain A domain 4

3D model

Region: 301 - 954
Aligned: 589
Modelled: 619
Confidence: 100.0%
Identity: 28%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1dgj chain A domain 4

3D model

Region: 301 - 953
Aligned: 585
Modelled: 601
Confidence: 100.0%
Identity: 27%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 3hrd chain E

3D model

Region: 167 - 634
Aligned: 418
Modelled: 431
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase

Phyre2

PDB 3hrd chain F

3D model

Region: 644 - 955
Aligned: 311
Modelled: 312
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase

Phyre2

PDB 2w3r chain G

3D model

Region: 1 - 166
Aligned: 161
Modelled: 165
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: G: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine

Phyre2
1

c1wygA_
2

c1vlbA_
3

c1dgjA_
4

c1sb3D_
5

c1ffvB_
6

c1n62E_
7

c1t3qB_
8

c2w54F_
9

c3eubL_
10

d1rm6a2
11

d1n62b2
12

d1ffvb2
13

d1jrob2
14

d1t3qb2
15

d1v97a5
16

d1vlba4
17

d1dgja4
18

c3hrdE_
19

c3hrdF_
20

c2w3rG_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1wygA_



100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
2c1vlbA_



100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
3c1dgjA_



100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774
4c1sb3D_



100.0 32 PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
5c1ffvB_



100.0 25 PDB header:hydrolase
Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava
6c1n62E_



100.0 25 PDB header:oxidoreductase
Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state
7c1t3qB_



100.0 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:quinoline 2-oxidoreductase large subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
8c2w54F_



100.0 28 PDB header:oxidoreductase
Chain: F: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase from2 rhodobacter capsulatus in complex with bound inhibitor3 pterin-6-aldehyde
9c3eubL_



100.0 25 PDB header:oxidoreductase
Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
10d1rm6a2



100.0 30 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
11d1n62b2



100.0 24 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
12d1ffvb2



100.0 25 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
13d1jrob2



100.0 27 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
14d1t3qb2



100.0 27 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
15d1v97a5



100.0 25 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
16d1vlba4



100.0 28 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
17d1dgja4



100.0 27 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
18c3hrdE_



100.0 30 PDB header:oxidoreductase
Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase
19c3hrdF_



100.0 28 PDB header:oxidoreductase
Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase
20c2w3rG_



100.0 26 PDB header:oxidoreductase
Chain: G: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine
21c1ffuA_



not modelled 100.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
22c3b9jI_



not modelled 100.0 24 PDB header:oxidoreductase
Chain: I: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
23c3hrdH_



not modelled 100.0 32 PDB header:oxidoreductase
Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
24c1rm6F_



not modelled 100.0 26 PDB header:oxidoreductase
Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
25c3eubJ_



not modelled 100.0 24 PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
26c1t3qD_



not modelled 100.0 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
27c1n60D_



not modelled 100.0 25 PDB header:oxidoreductase
Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain;
PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form
28d1dgja1



not modelled 100.0 23 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
29d1vlba1



not modelled 100.0 25 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
30d1t3qb1



not modelled 100.0 31 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
31d1v97a1



not modelled 100.0 26 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
32d1zxia1



not modelled 100.0 28 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
33d1n62a1



not modelled 100.0 26 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
34d1rm6c1



not modelled 100.0 28 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
35d1t3qa1



not modelled 100.0 18 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
36d1ffva1



not modelled 100.0 21 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
37d1ffvb1



not modelled 100.0 26 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
38d1n62b1



not modelled 100.0 30 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
39d1v97a3



not modelled 100.0 24 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
40d1jroa1



not modelled 100.0 28 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
41d3b9jc1



not modelled 99.9 27 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
42d1rm6a1



not modelled 99.9 41 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
43d1v97a2



not modelled 99.9 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
44d1jroa2



not modelled 99.9 26 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
45d1jrob1



not modelled 99.9 26 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
46d1ffva2



not modelled 99.9 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
47d1rm6c2



not modelled 99.9 23 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
48d1n62a2



not modelled 99.9 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
49d1t3qa2



not modelled 99.9 30 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
50d1vlba3



not modelled 99.9 29 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
51d1vlba2



not modelled 99.9 26 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
52d1dgja3



not modelled 99.9 25 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
53d1dgja2



not modelled 99.9 27 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
54d2bs2b2



not modelled 99.0 16 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
55d3c8ya2



not modelled 98.9 12 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
56d1nekb2



not modelled 98.8 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
57d1kf6b2



not modelled 98.6 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
58d2fug33



not modelled 98.4 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
59c2b76N_



not modelled 98.2 15 PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
60c1c4cA_



not modelled 98.0 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
61c2bs2E_



not modelled 97.6 18 PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
62c2h89B_



not modelled 97.4 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
63c2fugC_



not modelled 97.1 11 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
64d1frra_



not modelled 96.9 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
65d1fxia_



not modelled 96.8 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
66d1l5pa_



not modelled 96.8 16 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
67d1awda_



not modelled 96.8 11 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
68d1iuea_



not modelled 96.8 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
69d1czpa_



not modelled 96.6 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
70c1nekB_



not modelled 96.6 19 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
71d1a70a_



not modelled 96.5 13 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
72c3huiA_



not modelled 96.4 12 PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris
73d1wria_



not modelled 96.3 13 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
74c2wlbB_



not modelled 96.2 16 PDB header:electron transport
Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial;
PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria
75d1e9ma_



not modelled 96.0 20 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
76d2cjoa_



not modelled 95.9 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
77d2piaa3



not modelled 95.8 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
78d1jq4a_



not modelled 95.8 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
79d4fxca_



not modelled 95.7 10 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
80d1xlqa1



not modelled 95.6 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
81c3lxfC_



not modelled 95.6 18 PDB header:metal binding protein
Chain: C: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans
82d1pfda_



not modelled 95.6 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
83d1offa_



not modelled 95.5 8 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
84c1krhA_



not modelled 95.4 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase;
PDBTitle: x-ray stucture of benzoate dioxygenase reductase
85c3ah7A_



not modelled 95.4 16 PDB header:metal binding protein
Chain: A: PDB Molecule:[2fe-2s]ferredoxin;
PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004
86d1krha3



not modelled 95.2 10 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
87d1gaqb_



not modelled 95.1 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
88c2piaA_



not modelled 95.0 15 PDB header:reductase
Chain: A: PDB Molecule:phthalate dioxygenase reductase;
PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
89d1b9ra_



not modelled 95.0 10 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
90d1frda_



not modelled 94.7 10 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
91d1i7ha_



not modelled 94.6 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
92d2bt6a1



not modelled 94.4 13 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
93c1x31A_



not modelled 93.8 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
94d1doia_



not modelled 92.5 27 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
95c1l6vA_



not modelled 88.3 16 PDB header:electron transport
Chain: A: PDB Molecule:adrenodoxin 1;
PDBTitle: structure of reduced bovine adrenodoxin
96d1e0za_



not modelled 87.4 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
97c1y56A_



not modelled 87.2 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1363;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
98d1ep3b2



not modelled 76.4 11 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Dihydroorotate dehydrogenase B, PyrK subunit
99c2kl0A_



not modelled 75.8 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
100c3cwiA_



not modelled 71.2 26 PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
101d2gdga1



not modelled 61.9 14 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
102d1gd0a_



not modelled 61.3 15 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
103d2cu3a1



not modelled 60.8 32 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
104d1hfoa_



not modelled 58.4 16 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
105d1zud21



not modelled 58.3 19 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
106c3fwtA_



not modelled 57.0 11 PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: crystal structure of leishmania major mif2
107d1uiza_



not modelled 56.4 14 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
108c3gacD_



not modelled 55.9 16 PDB header:cytokine
Chain: D: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: structure of mif with hpp
109c1ep3B_



not modelled 54.4 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit);
PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.
110c2os5C_



not modelled 53.2 15 PDB header:cytokine
Chain: C: PDB Molecule:acemif;
PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum
111c3b64A_



not modelled 52.3 15 PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major
112d1dpta_



not modelled 51.9 12 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
113c2xczA_



not modelled 51.9 15 PDB header:immune system
Chain: A: PDB Molecule:possible atls1-like light-inducible protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus
114d1fima_



not modelled 51.7 14 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
115d1v86a_



not modelled 50.5 9 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
116d1v5oa_



not modelled 49.9 28 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
117d2fug11



not modelled 48.0 18 Fold:Bromodomain-like
Superfamily:Nqo1C-terminal domain-like
Family:Nqo1C-terminal domain-like
118c2fugA_



not modelled 44.5 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
119c1tygG_



not modelled 44.4 19 PDB header:biosynthetic protein
Chain: G: PDB Molecule:yjbs;
PDBTitle: structure of the thiazole synthase/this complex
120c2nnzA_



not modelled 43.8 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: solution structure of the hypothetical protein af2241 from2 archaeoglobus fulgidus

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0