Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	D	L	S	L	E	A	R	L	A	E	L	E	S	R	L	A	F	Q	E	I	T	I	E	E	L	N	V	T	V	T	A	H	E	M	E	M	A	K	L	R	D	H	L	R	L	L	T	E	K	L	K	A	S	Q	P	S	N	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																																		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.
Sequence		A	S	Q	A	E	E	T	P	P	P	H	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3efg chain A Region: 2 - 50 Aligned: 49 Modelled: 49 Confidence: 98.1% Identity: 41% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein slyx homolog; PDBTitle: structure of slyx protein from xanthomonas campestris pv. campestris2 str. atcc 33913 Phyre2 PDB 3m06 chain F Region: 5 - 56 Aligned: 52 Modelled: 52 Confidence: 93.3% Identity: 27% PDB header:protein binding Chain: F: PDB Molecule:tnf receptor-associated factor 2; PDBTitle: crystal structure of traf2 Phyre2 PDB 2xdj chain F Region: 13 - 56 Aligned: 44 Modelled: 44 Confidence: 92.0% Identity: 14% PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf Phyre2 PDB 1gd2 chain G Region: 8 - 48 Aligned: 41 Modelled: 41 Confidence: 89.2% Identity: 17% PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna Phyre2 PDB 3a7p chain B Region: 5 - 55 Aligned: 51 Modelled: 51 Confidence: 88.9% Identity: 22% PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 Phyre2 PDB 1m1j chain A Region: 3 - 47 Aligned: 45 Modelled: 45 Confidence: 87.2% Identity: 24% PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands Phyre2 PDB 2ykq chain C Region: 11 - 53 Aligned: 43 Modelled: 43 Confidence: 87.2% Identity: 21% PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer Phyre2 PDB 1deq chain D Region: 5 - 61 Aligned: 57 Modelled: 57 Confidence: 86.0% Identity: 19% PDB header: PDB COMPND: Phyre2 PDB 1deq chain F Region: 5 - 71 Aligned: 67 Modelled: 67 Confidence: 83.7% Identity: 15% PDB header: PDB COMPND: Phyre2 PDB 1deq chain O Region: 2 - 56 Aligned: 55 Modelled: 55 Confidence: 82.8% Identity: 7% PDB header: PDB COMPND: Phyre2 PDB 2wt7 chain B Region: 8 - 48 Aligned: 41 Modelled: 41 Confidence: 81.5% Identity: 17% PDB header:transcription Chain: B: PDB Molecule:transcription factor mafb; PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna Phyre2 PDB 1t2k chain D Region: 8 - 45 Aligned: 38 Modelled: 38 Confidence: 81.1% Identity: 24% PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna Phyre2 PDB 1zxa chain B Region: 7 - 35 Aligned: 29 Modelled: 29 Confidence: 80.6% Identity: 38% PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia Phyre2 PDB 3ghg chain K Region: 5 - 56 Aligned: 52 Modelled: 52 Confidence: 80.4% Identity: 8% PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen Phyre2 PDB 1ei3 chain E Region: 5 - 56 Aligned: 52 Modelled: 52 Confidence: 79.7% Identity: 12% PDB header: PDB COMPND: Phyre2 PDB 3m0d chain C Region: 7 - 56 Aligned: 50 Modelled: 50 Confidence: 79.6% Identity: 30% PDB header:signaling protein Chain: C: PDB Molecule:tnf receptor-associated factor 1; PDBTitle: crystal structure of the traf1:traf2:ciap2 complex Phyre2 PDB 3mov chain B Region: 2 - 55 Aligned: 51 Modelled: 51 Confidence: 76.7% Identity: 25% PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment Phyre2 PDB 1fos chain F Region: 8 - 45 Aligned: 38 Modelled: 38 Confidence: 73.6% Identity: 24% PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes Phyre2 PDB 1ci6 chain A Region: 8 - 48 Aligned: 41 Modelled: 41 Confidence: 73.5% Identity: 20% PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer Phyre2 PDB 3m9b chain K Region: 5 - 42 Aligned: 38 Modelled: 38 Confidence: 73.1% Identity: 29% PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa Phyre2 1 c3efgA_ 2 c3m06F_ 3 c2xdjF_ 4 c1gd2G_ 5 c3a7pB_ 6 c1m1jA_ 7 c2ykqC_ 8 c1deqD_ 9 c1deqF_ 10 c1deqO_ 11 c2wt7B_ 12 c1t2kD_ 13 c1zxaB_ 14 c3ghgK_ 15 c1ei3E_ 16 c3m0dC_ 17 c3movB_ 18 c1fosF_ 19 c1ci6A_ 20 c3m9bK_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3efgA_ 98.1 41 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein slyx homolog; PDBTitle: structure of slyx protein from xanthomonas campestris pv. campestris2 str. atcc 33913 2 c3m06F_ 93.3 27 PDB header:protein binding Chain: F: PDB Molecule:tnf receptor-associated factor 2; PDBTitle: crystal structure of traf2 3 c2xdjF_ 92.0 14 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 4 c1gd2G_ 89.2 17 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 5 c3a7pB_ 88.9 22 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 6 c1m1jA_ 87.2 24 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 7 c2ykqC_ 87.2 21 PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer 8 c1deqD_ 86.0 19 PDB header: PDB COMPND: 9 c1deqF_ 83.7 15 PDB header: PDB COMPND: 10 c1deqO_ 82.8 7 PDB header: PDB COMPND: 11 c2wt7B_ 81.5 17 PDB header:transcription Chain: B: PDB Molecule:transcription factor mafb; PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna 12 c1t2kD_ 81.1 24 PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna 13 c1zxaB_ 80.6 38 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 14 c3ghgK_ 80.4 8 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 15 c1ei3E_ 79.7 12 PDB header: PDB COMPND: 16 c3m0dC_ 79.6 30 PDB header:signaling protein Chain: C: PDB Molecule:tnf receptor-associated factor 1; PDBTitle: crystal structure of the traf1:traf2:ciap2 complex 17 c3movB_ 76.7 25 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment 18 c1fosF_ 73.6 24 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 19 c1ci6A_ 73.5 20 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 20 c3m9bK_ 73.1 29 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 21 c1aq5C_ not modelled 72.6 20 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 22 c1n73A_ not modelled 72.6 18 PDB header:blood clotting Chain: A: PDB Molecule:fibrin alpha-1 chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 23 c2hpcF_ not modelled 72.4 12 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 24 c2z5hB_ not modelled 72.0 15 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt 25 c1ei3C_ not modelled 64.9 15 PDB header: PDB COMPND: 26 c2e43A_ not modelled 64.2 21 PDB header:transcription/dna Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta; PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment 27 c1x8yA_ not modelled 63.1 24 PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b 28 c2v4hA_ not modelled 62.7 20 PDB header:transcription Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cc2-lz domain - 1d5 darpin complex 29 c1ca9D_ not modelled 62.6 19 PDB header:tnf signaling Chain: D: PDB Molecule:protein (tnf receptor associated factor 2); PDBTitle: structure of tnf receptor associated factor 2 in complex2 with a peptide from tnf-r2 30 c1n73C_ not modelled 61.5 14 PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 31 c2fxmB_ not modelled 58.3 15 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 32 c1gk4A_ not modelled 55.6 14 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 33 c3dtpA_ not modelled 53.4 29 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 34 c2zdiA_ not modelled 52.9 17 PDB header:chaperone Chain: A: PDB Molecule:prefoldin subunit beta; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 35 c1fllA_ not modelled 50.7 8 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: molecular basis for cd40 signaling mediated by traf3 36 c1fosE_ not modelled 48.8 18 PDB header:transcription/dna Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 37 c2d3eD_ not modelled 47.6 23 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 38 c2xzrA_ not modelled 47.5 21 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 39 c3mkxC_ not modelled 47.4 24 PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin 40 c3bvhE_ not modelled 47.3 24 PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 41 c3cvfA_ not modelled 47.1 17 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 42 c3ghgD_ not modelled 46.9 20 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 43 c2a93B_ not modelled 45.2 22 PDB header:leucine zippers Chain: B: PDB Molecule:c-myc-max heterodimeric leucine zipper; PDBTitle: nmr solution structure of the c-myc-max heterodimeric2 leucine zipper, 40 structures 44 c2zdiC_ not modelled 42.0 15 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 45 c1lwuH_ not modelled 39.7 18 PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from lamprey fibrinogen complexed with2 the peptide gly-his-arg-pro-amide 46 c1junB_ not modelled 39.3 24 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 47 c3a5tB_ not modelled 38.7 24 PDB header:transcription regulator/dna Chain: B: PDB Molecule:transcription factor mafg; PDBTitle: crystal structure of mafg-dna complex 48 c2fxpA_ not modelled 38.4 25 PDB header:viral protein Chain: A: PDB Molecule:spike glycoprotein; PDBTitle: solution structure of the sars-coronavirus hr2 domain 49 c2efrB_ not modelled 37.5 17 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 50 c3u59C_ not modelled 37.5 11 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 51 c3hizB_ not modelled 36.4 12 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 52 c1cosB_ not modelled 36.4 48 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 53 c1cosC_ not modelled 36.4 48 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 54 c1cosA_ not modelled 36.4 48 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 55 c3m9hB_ not modelled 35.9 29 PDB header:chaperone Chain: B: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain of the2 mycobacterium tuberculosis proteasomal atpase mpa 56 c1c1gA_ not modelled 35.6 16 PDB header:contractile protein Chain: A: PDB Molecule:tropomyosin; PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form 57 c3ojaB_ not modelled 34.7 15 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 58 c1coiA_ not modelled 34.3 39 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 59 c3na7A_ not modelled 31.1 12 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 60 c3bvhC_ not modelled 30.8 16 PDB header:blood clotting Chain: C: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 61 d1fxkc_ not modelled 30.1 18 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 62 c2xgjA_ not modelled 29.1 17 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance 63 c3u1aC_ not modelled 28.9 19 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 64 c1l4aD_ not modelled 28.8 6 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 65 c2akfC_ not modelled 27.3 16 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 66 c2akfA_ not modelled 27.3 16 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 67 c3h32A_ not modelled 27.1 21 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of d-dimer from human fibrin complexed with gly-his-2 arg-pro-tyr-amide 68 c1pl5A_ not modelled 26.0 25 PDB header:dna binding protein/transcription Chain: A: PDB Molecule:regulatory protein sir4; PDBTitle: crystal structure analysis of the sir4p c-terminal coiled2 coil 69 c3ci9B_ not modelled 26.0 29 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 70 c1ce9A_ not modelled 25.4 29 PDB header:helix capping Chain: A: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper 71 c1ce9B_ not modelled 25.4 29 PDB header:helix capping Chain: B: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper 72 c1ce9C_ not modelled 25.4 29 PDB header:helix capping Chain: C: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper 73 c1ce9D_ not modelled 25.4 29 PDB header:helix capping Chain: D: PDB Molecule:protein (gcn4-pmse); PDBTitle: helix capping in the gcn4 leucine zipper 74 c1nyhA_ not modelled 25.2 25 PDB header:transcription repressor Chain: A: PDB Molecule:regulatory protein sir4; PDBTitle: crystal structure of the coiled-coil dimerization motif of sir4 75 c3a2aC_ not modelled 25.0 29 PDB header:transport protein Chain: C: PDB Molecule:voltage-gated hydrogen channel 1; PDBTitle: the structure of the carboxyl-terminal domain of the human voltage-2 gated proton channel hv1 76 c1kwwC_ not modelled 25.0 22 PDB header:immune system, sugar binding protein Chain: C: PDB Molecule:mannose-binding protein a; PDBTitle: rat mannose protein a complexed with a-me-fuc. 77 c2akfB_ not modelled 24.9 17 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 78 c2ba2A_ not modelled 24.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0134 protein mpn010; PDBTitle: crystal structure of the duf16 domain of mpn010 from2 mycoplasma pneumoniae 79 c1mofA_ not modelled 23.7 22 PDB header:viral protein Chain: A: PDB Molecule:moloney murine leukemia virus p15; PDBTitle: coat protein 80 c2pnvA_ not modelled 23.5 24 PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus 81 c1bf5A_ not modelled 23.1 10 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 82 c1w5jB_ not modelled 23.0 21 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 83 c3ol1A_ not modelled 22.4 17 PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b 84 c2x7aB_ not modelled 22.2 14 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 85 c1l8dB_ not modelled 22.1 19 PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook 86 c1yvlB_ not modelled 22.1 10 PDB header:signaling protein Chain: B: PDB Molecule:signal transducer and activator of transcription PDBTitle: structure of unphosphorylated stat1 87 c2wq1A_ not modelled 21.8 23 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with three ixxntxx motifs2 coordinating bromide 88 c2wq3A_ not modelled 21.8 23 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with three ixxntxx motifs2 coordinating chloride and nitrate 89 c2eqbC_ not modelled 21.7 13 PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex 90 c1w5jA_ not modelled 21.4 23 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 91 c1w5jD_ not modelled 21.4 23 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 92 c1w5jC_ not modelled 21.4 23 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 93 c1y4mC_ not modelled 21.3 16 PDB header:membrane protein Chain: C: PDB Molecule:herv-frd_6p24.1 provirus ancestral env polyprotein; PDBTitle: crystal structure of human endogenous retrovirus herv-frd envelope2 protein (syncitin-2) 94 c1gcmA_ not modelled 20.9 19 PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 95 c1w5kB_ not modelled 20.7 23 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 96 c1w5kA_ not modelled 20.7 23 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 97 c1w5kC_ not modelled 20.7 23 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 98 c1w5kD_ not modelled 20.7 23 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 99 c1by0A_ not modelled 20.3 28 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0