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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1lwuH_

Fold library idPDB HeaderMoleculeTitle
c1lwuH_PDB header: blood clottingChain: H: PDB Molecule: fibrinogen beta chain;PDBTitle: crystal structure of fragment d from lamprey fibrinogen2 complexed with the peptide gly-his-arg-pro-amide


Added to library: Tue Mar 16 13:21:38 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHC
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Known secondary structure (DSSP)
TTTTTTTTTTTS








S

BSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNG
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Known secondary structure (DSSP) TT

S

S
TTS


SGGGS
SSS
S





S

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence KSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNA
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Known secondary structure (DSSP) SS





S

TTS


GGGTT



SSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence LLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIY
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Known secondary structure (DSSP)

TTS
TT

TT


BBTTB

SSS
TT
TT

TTTTT
S
B

SSS
STTS


TTSB
 .........290.........300.........310.....
Sequence TKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK
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Known secondary structure (DSSP)
TTTSTTSS

SS
TTB

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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