Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	L	S	S	L	T	A	V	S	P	V	D	G	R	Y	G	D	K	V	S	A	L	R	G	I	F	S	E	Y	G	L	L	K	F	R	V	Q	V	E	V	R	W	L	Q	K	L	A	A	H	A	A	I	K	E	V	P	A	F	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	D	A	I	G	Y	L	D	A	I	V	A	S	F	S	E	E	D	A	A	R	I	K	T	I	E	R	T	T	N	H	D	V	K	A	V	E	Y	F	L	K	E	K	V	A	E	I	P	E	L	H	A	V	S	E	F	I	H	F	A
Secondary structure
SS confidence
Disorder																														?	?	?																	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		C	T	S	E	D	I	N	N	L	S	H	A	L	M	L	K	T	A	R	D	E	V	I	L	P	Y	W	R	Q	L	I	D	G	I	K	D	L	A	V	Q	Y	R	D	I	P	L	L	S	R	T	H	G	Q	P	A	T	P	S	T	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	K	E	M	A	N	V	A	Y	R	M	E	R	Q	Y	R	Q	L	N	Q	V	E	I	L	G	K	I	N	G	A	V	G	N	Y	N	A	H	I	A	A	Y	P	E	V	D	W	H	Q	F	S	E	E	F	V	T	S	L	G	I	Q
Secondary structure
SS confidence
Disorder																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		W	N	P	Y	T	T	Q	I	E	P	H	D	Y	I	A	E	L	F	D	C	V	A	R	F	N	T	I	L	I	D	F	D	R	D	V	W	G	Y	I	A	L	N	H	F	K	Q	K	T	I	A	G	E	I	G	S	S	T	M	P	H
Secondary structure
SS confidence
Disorder				?			?																																											?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		K	V	N	P	I	D	F	E	N	S	E	G	N	L	G	L	S	N	A	V	L	Q	H	L	A	S	K	L	P	V	S	R	W	Q	R	D	L	T	D	S	T	V	L	R	N	L	G	V	G	I	G	Y	A	L	I	A	Y	Q	S	T
Secondary structure
SS confidence
Disorder																															?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	K	G	V	S	K	L	E	V	N	R	D	H	L	L	D	E	L	D	H	N	W	E	V	L	A	E	P	I	Q	T	V	M	R	R	Y	G	I	E	K	P	Y	E	K	L	K	E	L	T	R	G	K	R	V	D	A	E	G	M	K
Secondary structure
SS confidence
Disorder																																																								?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Sequence		Q	F	I	D	G	L	A	L	P	E	E	E	K	A	R	L	K	A	M	T	P	A	N	Y	I	G	R	A	I	T	M	V	D	E	L	K
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?																					?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pts chain A Region: 2 - 456 Aligned: 444 Modelled: 446 Confidence: 100.0% Identity: 95% PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of wild type escherichia coli adenylosuccinate lyase Phyre2 PDB 3bhg chain A Region: 3 - 455 Aligned: 447 Modelled: 453 Confidence: 100.0% Identity: 55% PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase from legionella2 pneumophila Phyre2 PDB 2qga chain C Region: 6 - 455 Aligned: 442 Modelled: 450 Confidence: 100.0% Identity: 46% PDB header:lyase Chain: C: PDB Molecule:adenylosuccinate lyase; PDBTitle: plasmodium vivax adenylosuccinate lyase pv003765 with amp bound Phyre2 PDB 2vd6 chain B Region: 4 - 455 Aligned: 424 Modelled: 452 Confidence: 100.0% Identity: 18% PDB header:lyase Chain: B: PDB Molecule:adenylosuccinate lyase; PDBTitle: human adenylosuccinate lyase in complex with its substrate2 n6-(1,2-dicarboxyethyl)-amp, and its products amp and3 fumarate. Phyre2 PDB 2pfm chain A Region: 14 - 455 Aligned: 416 Modelled: 442 Confidence: 100.0% Identity: 22% PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis Phyre2 PDB 1c3c chain A Region: 15 - 456 Aligned: 411 Modelled: 442 Confidence: 100.0% Identity: 21% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1yis chain A Region: 2 - 455 Aligned: 395 Modelled: 405 Confidence: 100.0% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: structural genomics of caenorhabditis elegans: adenylosuccinate lyase Phyre2 PDB 1re5 chain A Region: 12 - 455 Aligned: 418 Modelled: 434 Confidence: 100.0% Identity: 21% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1i0a chain A Region: 14 - 455 Aligned: 419 Modelled: 432 Confidence: 100.0% Identity: 18% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1tj7 chain A Region: 12 - 455 Aligned: 424 Modelled: 441 Confidence: 100.0% Identity: 17% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1q5n chain A Region: 12 - 455 Aligned: 417 Modelled: 433 Confidence: 100.0% Identity: 18% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1hy0 chain A Region: 21 - 455 Aligned: 412 Modelled: 431 Confidence: 100.0% Identity: 17% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1dof chain A Region: 8 - 430 Aligned: 376 Modelled: 399 Confidence: 100.0% Identity: 24% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1k62 chain A Region: 7 - 455 Aligned: 421 Modelled: 445 Confidence: 100.0% Identity: 18% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 1j3u chain A Region: 2 - 447 Aligned: 428 Modelled: 446 Confidence: 100.0% Identity: 15% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 2e9f chain C Region: 15 - 455 Aligned: 413 Modelled: 440 Confidence: 100.0% Identity: 18% PDB header:lyase Chain: C: PDB Molecule:argininosuccinate lyase; PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine Phyre2 PDB 1tjv chain A Region: 20 - 455 Aligned: 413 Modelled: 431 Confidence: 100.0% Identity: 17% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 PDB 3c8t chain A Region: 11 - 455 Aligned: 410 Modelled: 425 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:fumarate lyase; PDBTitle: crystal structure of fumarate lyase from mesorhizobium sp. bnc1 Phyre2 PDB 1yfm chain A Region: 2 - 445 Aligned: 426 Modelled: 444 Confidence: 100.0% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:fumarase; PDBTitle: recombinant yeast fumarase Phyre2 PDB 1yfm chain A Region: 2 - 445 Aligned: 426 Modelled: 444 Confidence: 100.0% Identity: 16% Fold: L-aspartase-like Superfamily: L-aspartase-like Family: L-aspartase/fumarase Phyre2 1 c2ptsA_ 2 c3bhgA_ 3 c2qgaC_ 4 c2vd6B_ 5 c2pfmA_ 6 d1c3ca_ 7 c1yisA_ 8 d1re5a_ 9 d1i0aa_ 10 d1tj7a_ 11 d1q5na_ 12 d1hy0a_ 13 d1dofa_ 14 d1k62a_ 15 d1j3ua_ 16 c2e9fC_ 17 d1tjva_ 18 c3c8tA_ 19 c1yfmA_ 20 d1yfma_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ptsA_ 100.0 95 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of wild type escherichia coli adenylosuccinate lyase 2 c3bhgA_ 100.0 55 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase from legionella2 pneumophila 3 c2qgaC_ 100.0 46 PDB header:lyase Chain: C: PDB Molecule:adenylosuccinate lyase; PDBTitle: plasmodium vivax adenylosuccinate lyase pv003765 with amp bound 4 c2vd6B_ 100.0 18 PDB header:lyase Chain: B: PDB Molecule:adenylosuccinate lyase; PDBTitle: human adenylosuccinate lyase in complex with its substrate2 n6-(1,2-dicarboxyethyl)-amp, and its products amp and3 fumarate. 5 c2pfmA_ 100.0 22 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis 6 d1c3ca_ 100.0 21 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 7 c1yisA_ 100.0 17 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: structural genomics of caenorhabditis elegans: adenylosuccinate lyase 8 d1re5a_ 100.0 21 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 9 d1i0aa_ 100.0 18 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 10 d1tj7a_ 100.0 17 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 11 d1q5na_ 100.0 18 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 12 d1hy0a_ 100.0 17 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 13 d1dofa_ 100.0 24 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 14 d1k62a_ 100.0 18 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 15 d1j3ua_ 100.0 15 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 16 c2e9fC_ 100.0 18 PDB header:lyase Chain: C: PDB Molecule:argininosuccinate lyase; PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine 17 d1tjva_ 100.0 17 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 18 c3c8tA_ 100.0 20 PDB header:lyase Chain: A: PDB Molecule:fumarate lyase; PDBTitle: crystal structure of fumarate lyase from mesorhizobium sp. bnc1 19 c1yfmA_ 100.0 16 PDB header:lyase Chain: A: PDB Molecule:fumarase; PDBTitle: recombinant yeast fumarase 20 d1yfma_ 100.0 16 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 21 d1fuoa_ not modelled 100.0 17 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 22 d1vdka_ not modelled 100.0 18 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 23 d1jswa_ not modelled 100.0 15 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 24 c3no9C_ not modelled 100.0 15 PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase class ii; PDBTitle: crystal structure of apo fumarate hydratase from mycobacterium2 tuberculosis 25 c3ocfB_ not modelled 100.0 16 PDB header:lyase Chain: B: PDB Molecule:fumarate lyase:delta crystallin; PDBTitle: crystal structure of fumarate lyase:delta crystallin from brucella2 melitensis in native form 26 d1jswc_ not modelled 100.0 14 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 27 c3e04C_ not modelled 100.0 15 PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase; PDBTitle: crystal structure of human fumarate hydratase 28 c2fenA_ not modelled 100.0 21 PDB header:isomerase Chain: A: PDB Molecule:3-carboxy-cis,cis-muconate lactonizing enzyme; PDBTitle: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium2 radiobacter s2 29 c3gtdB_ not modelled 100.0 15 PDB header:lyase Chain: B: PDB Molecule:fumarate hydratase class ii; PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii 30 d1f1oa_ not modelled 100.0 24 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 31 c3r6yG_ not modelled 100.0 14 PDB header:lyase Chain: G: PDB Molecule:aspartase; PDBTitle: crystal structure of chymotrypsin-treated aspartase from bacillus sp.2 ym55-1 32 c2ctoA_ not modelled 28.3 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:novel protein; PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904 33 d1rp4a_ not modelled 18.4 11 Fold:ERO1-like Superfamily:ERO1-like Family:ERO1-like 34 c3ahrA_ not modelled 15.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:ero1-like protein alpha; PDBTitle: inactive human ero1 35 c2xgvA_ not modelled 15.0 23 PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) 36 c1wjvA_ not modelled 14.2 56 PDB header:dna binding protein Chain: A: PDB Molecule:cell growth regulating nucleolar protein lyar; PDBTitle: solution structure of the n-terminal zinc finger domain of2 mouse cell growth regulating nucleolar protein lyar 37 c2ev9B_ not modelled 13.1 43 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from thermus2 thermophilus hb8 in complex with nadp(h) and shikimate 38 c3fbtB_ not modelled 12.7 33 PDB header:oxidoreductase, lyase Chain: B: PDB Molecule:chorismate mutase and shikimate 5-dehydrogenase PDBTitle: crystal structure of a chorismate mutase/shikimate 5-2 dehydrogenase fusion protein from clostridium3 acetobutylicum 39 c3bbnC_ not modelled 12.7 57 PDB header:ribosome Chain: C: PDB Molecule:ribosomal protein s3; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 40 d1nvta2 not modelled 12.2 29 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 41 d2cb2a1 not modelled 11.3 33 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:SOR-like 42 d1v5pa_ not modelled 10.7 50 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 43 d1vi2a2 not modelled 10.4 14 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 44 d1g3pa2 not modelled 9.6 33 Fold:N-terminal domains of the minor coat protein g3p Superfamily:N-terminal domains of the minor coat protein g3p Family:N-terminal domains of the minor coat protein g3p 45 d1npya2 not modelled 9.3 23 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 46 c3egqB_ not modelled 9.3 8 PDB header:transcription Chain: B: PDB Molecule:tetr family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator (af_1817)2 from archaeoglobus fulgidus at 2.55 a resolution 47 d1p77a2 not modelled 9.1 20 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 48 c3dikA_ not modelled 8.9 22 PDB header:viral protein Chain: A: PDB Molecule:capsid protein p24; PDBTitle: pseudo-atomic model of the hiv-1 ca hexameric lattice 49 c1nvtA_ not modelled 8.8 27 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5'-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe or2 mj1084) in complex with nadp+ 50 c3pwzA_ not modelled 8.7 27 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase 3; PDBTitle: crystal structure of an ael1 enzyme from pseudomonas putida 51 c1p74B_ not modelled 8.3 20 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from2 haemophilus influenzae 52 c1dipA_ not modelled 7.9 14 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 53 d2qalc1 not modelled 7.7 38 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 54 c3u62A_ not modelled 7.6 57 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from thermotoga maritima 55 d1lbua1 not modelled 7.6 23 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 56 c3pgjB_ not modelled 7.5 27 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.49 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. n169613 in complex with shikimate 57 c3tozA_ not modelled 7.4 27 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from2 listeria monocytogenes in complex with nad. 58 c2hk8B_ not modelled 7.4 20 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution 59 d1wjva1 not modelled 7.4 63 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:C2HC finger 60 d1nyta2 not modelled 7.4 29 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 61 c1ekuA_ not modelled 7.3 31 PDB header:immune system Chain: A: PDB Molecule:interferon gamma; PDBTitle: crystal structure of a biologically active single chain2 mutant of human ifn-gamma 62 c2eggA_ not modelled 7.3 57 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from2 geobacillus kaustophilus 63 d1prtb1 not modelled 7.1 42 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 64 c2choA_ not modelled 6.5 83 PDB header:hydrolase Chain: A: PDB Molecule:glucosaminidase; PDBTitle: bacteroides thetaiotaomicron hexosaminidase with o-2 glcnacase activity 65 d1u5ta1 not modelled 6.5 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 66 c3o8qB_ not modelled 6.5 27 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae 67 c2zmeA_ not modelled 6.4 4 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 68 c3oakC_ not modelled 6.4 21 PDB header:transcription Chain: C: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex 69 c1npyA_ not modelled 6.4 43 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical shikimate 5-dehydrogenase-like PDBTitle: structure of shikimate 5-dehydrogenase-like protein hi0607 70 c1jmtB_ not modelled 6.4 29 PDB header:rna binding protein Chain: B: PDB Molecule:splicing factor u2af 65 kda subunit; PDBTitle: x-ray structure of a core u2af65/u2af35 heterodimer 71 c2dinA_ not modelled 6.2 32 PDB header:dna binding protein Chain: A: PDB Molecule:cell division cycle 5-like protein; PDBTitle: solution structure of the myb_dna-binding domain of human2 cell division cycle 5-like protein 72 d2ibge1 not modelled 6.2 11 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:Hedgehog (development protein), N-terminal signaling domain 73 d2uubc1 not modelled 6.1 50 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 74 c3no7A_ not modelled 6.0 23 PDB header:dna binding protein Chain: A: PDB Molecule:putative plasmid related protein; PDBTitle: crystal structure of the centromere-binding protein parb from plasmid2 pcxc100 75 c1nytC_ not modelled 6.0 27 PDB header:oxidoreductase Chain: C: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: shikimate dehydrogenase aroe complexed with nadp+ 76 c3cuqA_ not modelled 5.9 4 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 77 c2nloA_ not modelled 5.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of the quinate dehydrogenase from corynebacterium2 glutamicum 78 d1jfla2 not modelled 5.7 12 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 79 c2dchX_ not modelled 5.7 36 PDB header:hydrolase Chain: X: PDB Molecule:putative homing endonuclease; PDBTitle: crystal structure of archaeal intron-encoded homing endonuclease i-2 tsp061i 80 c1vi2B_ not modelled 5.6 15 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2; PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad 81 d1cg2a2 not modelled 5.6 22 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 82 c2qv5A_ not modelled 5.6 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 83 c1iijA_ not modelled 5.5 50 PDB header:signaling protein Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase; PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment 84 c3hsbB_ not modelled 5.5 43 PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer 85 d2i9xa1 not modelled 5.2 43 Fold:SpoVG-like Superfamily:SpoVG-like Family:SpoVG-like 86 c2i9zB_ not modelled 5.2 43 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative septation protein spovg; PDBTitle: structural genomics, the crystal structure of full-length spovg from2 staphylococcus epidermidis atcc 12228 87 c1s1iC_ not modelled 5.2 15 PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 88 c2jq1A_ not modelled 5.1 33 PDB header:antimicrobial protein Chain: A: PDB Molecule:phylloseptin-3; PDBTitle: phylloseptin-3

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0