PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3dikA_

Fold library id	PDB Header	Molecule	Title
c3dikA_	PDB header: viral protein	Chain: A: PDB Molecule: capsid protein p24;	PDBTitle: pseudo-atomic model of the hiv-1 ca hexameric lattice

Links to external resources
Added to library: Tue Mar 16 14:02:48 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P I V Q N L Q G Q M V H Q A I S P R T L N A W V K V V E E K A F S P E V I P M F S A L S E G A T P Q D L N T M L N T V G G H Q A A M Q M L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S S
T T T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E T I N E E A A E W D R L H P V H A G P I A P G Q M R E P R G S D I A G T T S T L Q E Q I G W M T H N P P I P V G E I Y K R W I I L G L N K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
G G G T T T T S S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I V R M Y S P T S I L D I R Q G P K E P F R D Y V D R F Y K T L R A E Q A S Q E V K N W M T E T L L V Q N A N P D C K T I L K A L G P G A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T
T T
T T
T T T T T S S
T T

. . . . . . . . .

Sequence L E E M M T A C Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	I	V	Q	N	L	Q	G	Q	M	V	H	Q	A	I	S	P	R	T	L	N	A	W	V	K	V	V	E	E	K	A	F	S	P	E	V	I	P	M	F	S	A	L	S	E	G	A	T	P	Q	D	L	N	T	M	L	N	T	V	G	G	H	Q	A	A	M	Q	M	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T																						S	S	S		T	T									T	T	T													S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	T	I	N	E	E	A	A	E	W	D	R	L	H	P	V	H	A	G	P	I	A	P	G	Q	M	R	E	P	R	G	S	D	I	A	G	T	T	S	T	L	Q	E	Q	I	G	W	M	T	H	N	P	P	I	P	V	G	E	I	Y	K	R	W	I	I	L	G	L	N	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S									T	T						G	G	G	T	T	T	T	S	S												S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	V	R	M	Y	S	P	T	S	I	L	D	I	R	Q	G	P	K	E	P	F	R	D	Y	V	D	R	F	Y	K	T	L	R	A	E	Q	A	S	Q	E	V	K	N	W	M	T	E	T	L	L	V	Q	N	A	N	P	D	C	K	T	I	L	K	A	L	G	P	G	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S				S	T	T					T	T																	T	T												T	T	T	T	T	S	S													T	T
	.	.	.	.	.	.	.	.	.
Sequence	L	E	E	M	M	T	A	C	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)