PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1s1iC_

Fold library id	PDB Header	Molecule	Title
c1s1iC_	PDB header: ribosome	Chain: C: PDB Molecule: 60s ribosomal protein l3;	PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.

Links to external resources
Added to library: Tue Mar 16 12:30:58 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A P R H G H L G F L P R K R A A S I R A R V K A F P K D D R S K P V A L T S F L G Y K A G M T T I V R D L D R P G S K F H K R E V V E A V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S
S
S S S S
S
S S
S
S S
S
S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V V D T P P V V V V G V V G Y V E T P R G L R S L T T V W A E H L S D E V K R R F Y K N W Y K S K K K A F T K Y S A K Y A Q D G A G I E R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S
B
S
T T T T T T B S
S S
S S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L A R I K K Y A S V V R V L V H T Q I R K T P L A Q K K A H L A E I Q L N G G S I S E K V D W A R E H F E K T V A V D S V F E Q N E M I D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S
T T
S
S S S T T S S
B
S S S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence I A V T K G H G F E G V T H R W G T K K L P R K T H R G L R K V A C I G A W H P A H V M W S V A R A G Q R G Y H S R T S I N H K I Y R V G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B
S T T S S
T T T T S S
S
S
S S S S S
S S
B
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G D D E A N G A T S F D R T K K T I T P M G G F V H Y G E I K N D F I M V K G C I P G N R K R I V T L R K S L Y T N T S R K A L E E V S L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S
S S
S S
T T
S S S S
S
S S
S S
T T S
B
S S
S
S

. . . . . . . . .

Sequence W I D T A S K F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	P	R	H	G	H	L	G	F	L	P	R	K	R	A	A	S	I	R	A	R	V	K	A	F	P	K	D	D	R	S	K	P	V	A	L	T	S	F	L	G	Y	K	A	G	M	T	T	I	V	R	D	L	D	R	P	G	S	K	F	H	K	R	E	V	V	E	A	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S		S	S	S		S					S	S	S	S				S						S	S					S		S	S																	S		S	S	S			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	V	D	T	P	P	V	V	V	V	G	V	V	G	Y	V	E	T	P	R	G	L	R	S	L	T	T	V	W	A	E	H	L	S	D	E	V	K	R	R	F	Y	K	N	W	Y	K	S	K	K	K	A	F	T	K	Y	S	A	K	Y	A	Q	D	G	A	G	I	E	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															B				S	S				B							S				T	T	T	T	T	T	B	S				S	S			S	S				B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	A	R	I	K	K	Y	A	S	V	V	R	V	L	V	H	T	Q	I	R	K	T	P	L	A	Q	K	K	A	H	L	A	E	I	Q	L	N	G	G	S	I	S	E	K	V	D	W	A	R	E	H	F	E	K	T	V	A	V	D	S	V	F	E	Q	N	E	M	I	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	S														S	S		T	T			S												S	S	S										T	T	S	S		B		S	S	S	S			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	I	A	V	T	K	G	H	G	F	E	G	V	T	H	R	W	G	T	K	K	L	P	R	K	T	H	R	G	L	R	K	V	A	C	I	G	A	W	H	P	A	H	V	M	W	S	V	A	R	A	G	Q	R	G	Y	H	S	R	T	S	I	N	H	K	I	Y	R	V	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		B		S	T	T	S	S							T	T	T	T	S	S					S		S			S	S	S	S	S				S	S				B			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	D	D	E	A	N	G	A	T	S	F	D	R	T	K	K	T	I	T	P	M	G	G	F	V	H	Y	G	E	I	K	N	D	F	I	M	V	K	G	C	I	P	G	N	R	K	R	I	V	T	L	R	K	S	L	Y	T	N	T	S	R	K	A	L	E	E	V	S	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S				S	S					S	S				S	S			T	T		S	S	S	S					S						S	S				S	S		T	T	S			B					S	S			S					S
	.	.	.	.	.	.	.	.	.
Sequence	W	I	D	T	A	S	K	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S