Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77258
DateThu Jan 5 12:26:56 GMT 2012
Unique Job ID0bce17be54f538d4

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1vyra_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
Confidence and coverage
Confidence:100.0% Coverage: 99%
363 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSSEKLYSPLKVGAITAANRIFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEAT
Secondary structure 
SS confidence 
Disorder  ???????
?
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  QISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAENGHMAVQLWHTGRISHASLQPGGQAP
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  VAPSALSAGTRTSLRDENGQAIRVETSMPRALELEEIPGIVNDFRQAIANAREAGFDLVE
Secondary structure 
SS confidence 
Disorder 
???????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIEEWGADRIGIRVSPIGT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  FQNTDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYTDAFREKVRARFHGPIIG
Secondary structure 
SS confidence 
Disorder  ?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  AGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLVARLQRKAELNPQRAESFYGGGAEGYT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .....
Sequence  DYPTL
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1vyr chain A

3D model

Region: 3 - 365
Aligned: 363
Modelled: 363
Confidence: 100.0%
Identity: 88%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1gwj chain A

3D model

Region: 1 - 365
Aligned: 362
Modelled: 365
Confidence: 100.0%
Identity: 51%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 2gq8 chain A

3D model

Region: 1 - 364
Aligned: 361
Modelled: 364
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone

Phyre2

PDB 3aty chain A

3D model

Region: 1 - 364
Aligned: 361
Modelled: 364
Confidence: 100.0%
Identity: 37%
PDB header:oxidoreductase
Chain: A: PDB Molecule:prostaglandin f2a synthase;
PDBTitle: crystal structure of tcoye

Phyre2

PDB 3gka chain B

3D model

Region: 3 - 365
Aligned: 349
Modelled: 363
Confidence: 100.0%
Identity: 49%
PDB header:oxidoreductase
Chain: B: PDB Molecule:n-ethylmaleimide reductase;
PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei

Phyre2

PDB 1icp chain A

3D model

Region: 1 - 365
Aligned: 354
Modelled: 365
Confidence: 100.0%
Identity: 42%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1vji chain A

3D model

Region: 5 - 365
Aligned: 346
Modelled: 359
Confidence: 100.0%
Identity: 45%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1oya chain A

3D model

Region: 1 - 364
Aligned: 359
Modelled: 364
Confidence: 100.0%
Identity: 38%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1q45 chain A

3D model

Region: 2 - 365
Aligned: 360
Modelled: 364
Confidence: 100.0%
Identity: 37%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1ps9 chain A

3D model

Region: 2 - 352
Aligned: 325
Modelled: 337
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase

Phyre2

PDB 3k30 chain B

3D model

Region: 1 - 352
Aligned: 330
Modelled: 350
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex

Phyre2

PDB 1djn chain B

3D model

Region: 1 - 352
Aligned: 330
Modelled: 334
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)

Phyre2

PDB 1z41 chain A domain 1

3D model

Region: 3 - 354
Aligned: 328
Modelled: 333
Confidence: 100.0%
Identity: 32%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 3hf3 chain A

3D model

Region: 4 - 354
Aligned: 337
Modelled: 351
Confidence: 100.0%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01

Phyre2

PDB 2h90 chain A

3D model

Region: 4 - 360
Aligned: 347
Modelled: 357
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin

Phyre2

PDB 3l5a chain A

3D model

Region: 2 - 359
Aligned: 339
Modelled: 342
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus

Phyre2

PDB 1ps9 chain A domain 1

3D model

Region: 2 - 342
Aligned: 315
Modelled: 321
Confidence: 100.0%
Identity: 29%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 3kru chain C

3D model

Region: 4 - 352
Aligned: 325
Modelled: 334
Confidence: 100.0%
Identity: 35%
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39

Phyre2

PDB 3gr7 chain A

3D model

Region: 1 - 348
Aligned: 323
Modelled: 334
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form

Phyre2

PDB 1djq chain A domain 1

3D model

Region: 1 - 342
Aligned: 320
Modelled: 329
Confidence: 100.0%
Identity: 26%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2
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d1vyra_
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d1gwja_
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c2gq8A_
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c3atyA_
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c3gkaB_
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d1icpa_
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d1vjia_
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d1oyaa_
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d1q45a_
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c1ps9A_
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c3k30B_
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c1djnB_
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d1z41a1
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c3hf3A_
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c2h90A_
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c3l5aA_
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d1ps9a1
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c3kruC_
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c3gr7A_
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d1djqa1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1vyra_
100.0 88 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
2d1gwja_
100.0 51 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
3c2gq8A_
100.0 44 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone
4c3atyA_
100.0 37 PDB header:oxidoreductase
Chain: A: PDB Molecule:prostaglandin f2a synthase;
PDBTitle: crystal structure of tcoye
5c3gkaB_
100.0 49 PDB header:oxidoreductase
Chain: B: PDB Molecule:n-ethylmaleimide reductase;
PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei
6d1icpa_
100.0 42 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
7d1vjia_
100.0 45 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
8d1oyaa_
100.0 38 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
9d1q45a_
100.0 37 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
10c1ps9A_
100.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
11c3k30B_
100.0 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
12c1djnB_
100.0 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
13d1z41a1
100.0 32 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
14c3hf3A_
100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
15c2h90A_
100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin
16c3l5aA_
100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus
17d1ps9a1
100.0 29 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
18c3kruC_
100.0 35 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39
19c3gr7A_
100.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form
20d1djqa1
100.0 26 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
21d1gtea2
not modelled 100.0 10 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
22d1ep3a_
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
23d1vhna_
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
24c3b0vD_
not modelled 100.0 17 PDB header:oxidoreductase/rna
Chain: D: PDB Molecule:trna-dihydrouridine synthase;
PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna
25d1f76a_
not modelled 99.7 15 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
26d2b4ga1
not modelled 99.7 15 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
27c3oixA_
not modelled 99.7 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative dihydroorotate dehydrogenase; dihydroorotate
PDBTitle: crystal structure of the putative dihydroorotate dehydrogenase from2 streptococcus mutans
28d1juba_
not modelled 99.7 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
29d1d3ga_
not modelled 99.6 15 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
30c2fptA_
not modelled 99.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial;
PDBTitle: dual binding mode of a novel series of dhodh inhibitors
31d2gl5a1
not modelled 99.6 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
32c1tv5A_
not modelled 99.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase homolog, mitochondrial;
PDBTitle: plasmodium falciparum dihydroorotate dehydrogenase with a bound2 inhibitor
33d1tv5a1
not modelled 99.5 15 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
34d1uuma_
not modelled 99.4 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
35c1gthD_
not modelled 99.4 14 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
36c2htmB_
not modelled 99.4 17 PDB header:biosynthetic protein
Chain: B: PDB Molecule:thiazole biosynthesis protein thig;
PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8
37d1vrda1
not modelled 99.2 20 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
38c2gl5A_
not modelled 99.1 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase protein;
PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium
39c3tdmD_
not modelled 99.1 22 PDB header:de novo protein
Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel
PDBTitle: computationally designed tim-barrel protein, halfflr
40c3r2gA_
not modelled 99.1 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine 5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine 5' monophosphate dehydrogenase from2 legionella pneumophila
41c3gyeA_
not modelled 99.1 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, putative;
PDBTitle: didydroorotate dehydrogenase from leishmania major
42d1jpma1
not modelled 99.1 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
43c1kbiB_
not modelled 99.0 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome b2;
PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme
44c2z6jB_
not modelled 99.0 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:trans-2-enoyl-acp reductase ii;
PDBTitle: crystal structure of s. pneumoniae enoyl-acyl carrier2 protein reductase (fabk) in complex with an inhibitor
45d1goxa_
not modelled 99.0 20 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
46c1zfjA_
not modelled 99.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
47d1tb3a1
not modelled 99.0 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
48d1pvna1
not modelled 99.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
49d1zfja1
not modelled 98.9 21 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
50c1ypfB_
not modelled 98.9 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:gmp reductase;
PDBTitle: crystal structure of guac (ba5705) from bacillus anthracis at 1.8 a2 resolution
51d1geqa_
not modelled 98.9 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
52c1jcnA_
not modelled 98.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase i;
PDBTitle: binary complex of human type-i inosine monophosphate dehydrogenase2 with 6-cl-imp
53d1kbia1
not modelled 98.9 10 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
54c2o56D_
not modelled 98.9 16 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium
55c2a7nA_
not modelled 98.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:l(+)-mandelate dehydrogenase;
PDBTitle: crystal structure of the g81a mutant of the active chimera of (s)-2 mandelate dehydrogenase
56d1jr1a1
not modelled 98.9 20 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
57c2e77B_
not modelled 98.9 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate oxidase;
PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex
58d1p4ca_
not modelled 98.9 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
59d1wv2a_
not modelled 98.8 21 Fold:TIM beta/alpha-barrel
Superfamily:ThiG-like
Family:ThiG-like
60c2oo6A_
not modelled 98.8 15 PDB header:isomerase
Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase;
PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400
61d1p0ka_
not modelled 98.8 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
62c1vrdA_
not modelled 98.8 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase (tm1347)2 from thermotoga maritima at 2.18 a resolution
63d1qopa_
not modelled 98.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
64c3ffsC_
not modelled 98.7 23 PDB header:oxidoreductase
Chain: C: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: the crystal structure of cryptosporidium parvum inosine-5'-2 monophosphate dehydrogenase
65c2qq6B_
not modelled 98.7 21 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941
66c2ox4E_
not modelled 98.7 14 PDB header:isomerase
Chain: E: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of putative dehydratase from zymomonas mobilis zm4
67c2cdh1_
not modelled 98.7 19 PDB header:transferase
Chain: 1: PDB Molecule:enoyl reductase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.
68d1rd5a_
not modelled 98.7 19 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
69d1jcna1
not modelled 98.7 21 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
70c2zrvC_
not modelled 98.7 17 PDB header:isomerase
Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase;
PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn.
71d1xcfa_
not modelled 98.6 17 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
72c3bo9B_
not modelled 98.6 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nitroalkan dioxygenase;
PDBTitle: crystal structure of putative nitroalkan dioxygenase (tm0800) from2 thermotoga maritima at 2.71 a resolution
73c3khjE_
not modelled 98.6 19 PDB header:oxidoreductase
Chain: E: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: c. parvum inosine monophosphate dehydrogenase bound by inhibitor c64
74d1eepa_
not modelled 98.6 17 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
75c3rcyC_
not modelled 98.6 15 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035
76d1y0ea_
not modelled 98.6 14 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
77c3thuC_
not modelled 98.6 16 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg
78c3tjiA_
not modelled 98.6 17 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, n-terminal
PDBTitle: crystal structure of an enolase from enterobacter sp. 638 (efi target2 efi-501662) with bound mg
79d1yxya1
not modelled 98.5 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
80c2qjjC_
not modelled 98.5 16 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans
81d1xi3a_
not modelled 98.5 15 Fold:TIM beta/alpha-barrel
Superfamily:Thiamin phosphate synthase
Family:Thiamin phosphate synthase
82c1me9A_
not modelled 98.5 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh) from2 tritrichomonas foetus with imp bound
83c2a7rD_
not modelled 98.5 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:gmp reductase 2;
PDBTitle: crystal structure of human guanosine monophosphate2 reductase 2 (gmpr2)
84c3sqsA_
not modelled 98.5 16 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12
85d1ka9f_
not modelled 98.4 23 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
86c3q58A_
not modelled 98.4 19 PDB header:isomerase
Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase;
PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica
87c3bsmD_
not modelled 98.4 18 PDB header:lyase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens
88d1rvka1
not modelled 98.4 21 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
89c3navB_
not modelled 98.4 15 PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
90c3igsB_
not modelled 98.4 17 PDB header:isomerase
Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2;
PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase
91c2c3zA_
not modelled 98.4 14 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
92c2gjlA_
not modelled 98.4 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein pa1024;
PDBTitle: crystal structure of 2-nitropropane dioxygenase
93c3t8qA_
not modelled 98.4 15 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica
94c2ekcA_
not modelled 98.4 19 PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
95d1yeya1
not modelled 98.4 16 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
96d1xm3a_
not modelled 98.4 17 Fold:TIM beta/alpha-barrel
Superfamily:ThiG-like
Family:ThiG-like
97c3dfhC_
not modelled 98.4 15 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3
98c1jvnB_
not modelled 98.3 19 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
99d1nu5a1
not modelled 98.3 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
100c3t6cB_
not modelled 98.3 14 PDB header:lyase
Chain: B: PDB Molecule:putative mand family dehydratase;
PDBTitle: crystal structure of an enolase from pantoea ananatis (efi target efi-2 501676) with bound d-gluconate and mg
101d1thfd_
not modelled 98.3 15 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
102d2mnra1
not modelled 98.3 18 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
103d1o0ya_
not modelled 98.3 15 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
104c2oz8B_
not modelled 98.3 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mll7089 protein;
PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti
105c2podA_
not modelled 98.3 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase / muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from burkholderia2 pseudomallei k96243
106d1vcfa1
not modelled 98.2 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
107d1mzha_
not modelled 98.2 13 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
108c3dipA_
not modelled 98.2 13 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase protein from the2 environmental genome shotgun sequencing of the sargasso sea
109c3tj4B_
not modelled 98.2 19 PDB header:lyase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of an enolase from agrobacterium tumefaciens (efi2 target efi-502087) no mg
110d2cu0a1
not modelled 98.2 18 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
111d2tpsa_
not modelled 98.2 21 Fold:TIM beta/alpha-barrel
Superfamily:Thiamin phosphate synthase
Family:Thiamin phosphate synthase
112d1ub3a_
not modelled 98.2 17 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
113c2qgyA_
not modelled 98.2 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:enolase from the environmental genome shotgun
PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea
114d1ofda2
not modelled 98.2 18 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
115c2rduA_
not modelled 98.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyacid oxidase 1;
PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate
116d1vzwa1
not modelled 98.2 19 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
117c2qdeA_
not modelled 98.2 20 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1
118c1f9cA_
not modelled 98.2 21 PDB header:isomerase
Chain: A: PDB Molecule:protein (muconate cycloisomerase i);
PDBTitle: crystal structure of mle d178n variant
119c2pp1C_
not modelled 98.2 17 PDB header:lyase
Chain: C: PDB Molecule:l-talarate/galactarate dehydratase;
PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate
120c2pozA_
not modelled 98.2 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase;
PDBTitle: crystal structure of a putative dehydratase from mesorhizobium loti

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0