16/01/2012 05:12:40 : INFO  : Run start: Mon Jan 16 05:12:40 GMT 2012
16/01/2012 05:12:45 : INFO  : Initialised job
16/01/2012 05:12:46 : INFO  : Renaming log file 'phyre2_20120116_051239.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/0bce17be54f538d4/phyre_20120116_051239.log'
16/01/2012 05:12:47 : INFO  : Initialised job:
Sequence
>batch____
MSSEKLYSPLKVGAITAANRIFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEAT
QISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAENGHMAVQLWHTGRISHASLQPGGQAP
VAPSALSAGTRTSLRDENGQAIRVETSMPRALELEEIPGIVNDFRQAIANAREAGFDLVE
LHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIEEWGADRIGIRVSPIGT
FQNTDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYTDAFREKVRARFHGPIIG
AGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLVARLQRKAELNPQRAESFYGGGAEGYT
DYPTL

16/01/2012 05:12:48 : INFO  : Checked sequence
16/01/2012 05:12:51 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 05:12:52 : INFO  : PSI-BLAST 3 iterations
16/01/2012 05:15:27 : INFO  : PSI-BLAST 5 iterations
16/01/2012 05:18:03 : INFO  : Finished PSI-BLAST
16/01/2012 05:18:05 : INFO  : Running Buildali to generate a3m file
16/01/2012 05:29:35 : INFO  : Converting to HMM
16/01/2012 05:29:40 : INFO  : Calibrating HMM
16/01/2012 05:29:57 : INFO  : Searching HMM database
16/01/2012 05:38:36 : INFO  : Finished buildali
16/01/2012 05:38:38 : INFO  : Predicting secondary structure
16/01/2012 05:38:45 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 05:38:46 : INFO  : Predicting Disordered regions
16/01/2012 05:38:50 : INFO  : Predicted Disorder (Disopred)
16/01/2012 05:38:51 : INFO  : Running memsat_svm check
16/01/2012 05:41:21 : INFO  : Running memsat_svm full
16/01/2012 05:48:45 : INFO  : Predicted Transmembrane (memsat_svm) ID '0bce17be54f538d4'
16/01/2012 05:48:46 : INFO  : Initialising fold library search
16/01/2012 05:48:49 : INFO  : Initialised search input
16/01/2012 05:48:51 : INFO  : Building Ensemble models
16/01/2012 05:48:54 : INFO  : Building hh.d1vyra_.model.1.pdb
16/01/2012 05:49:08 : INFO  : Building d1vyra_.1.pdb
16/01/2012 05:49:22 : INFO  : Building d1gwja_.2.pdb
16/01/2012 05:49:35 : INFO  : Building c2gq8A_.3.pdb
16/01/2012 05:49:48 : INFO  : Building c3atyA_.4.pdb
16/01/2012 05:50:01 : INFO  : Building c3gkaB_.5.pdb
16/01/2012 05:50:14 : INFO  : Building d1icpa_.6.pdb
16/01/2012 05:50:28 : INFO  : Building d1vjia_.7.pdb
16/01/2012 05:50:41 : INFO  : Building d1oyaa_.8.pdb
16/01/2012 05:50:53 : INFO  : Building d1q45a_.9.pdb
16/01/2012 05:51:08 : INFO  : Building c1ps9A_.10.pdb
16/01/2012 05:51:22 : INFO  : Building c3k30B_.11.pdb
16/01/2012 05:51:35 : INFO  : Building c1djnB_.12.pdb
16/01/2012 05:51:49 : INFO  : Building d1z41a1.13.pdb
16/01/2012 05:52:02 : INFO  : Building c3hf3A_.14.pdb
16/01/2012 05:52:14 : INFO  : Building c2h90A_.15.pdb
16/01/2012 05:52:27 : INFO  : Building c3l5aA_.16.pdb
16/01/2012 05:52:41 : INFO  : Building d1ps9a1.17.pdb
16/01/2012 05:52:54 : INFO  : Building c3kruC_.18.pdb
16/01/2012 05:53:07 : INFO  : Building c3gr7A_.19.pdb
16/01/2012 05:53:20 : INFO  : Building d1djqa1.20.pdb
16/01/2012 05:53:48 : INFO  : Finished HH model building
16/01/2012 05:53:50 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 05:54:35 : INFO  : html domain output complete ID '0bce17be54f538d4'
16/01/2012 07:52:45 : INFO  : Run end  : Mon Jan 16 07:52:45 GMT 2012
