Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	T	K	K	N	N	S	E	Y	I	P	E	F	D	K	S	F	R	H	P	R	Y	W	G	A	W	L	G	V	A	A	M	A	G	I	A	L	T	P	P	K	F	R	D	P	I	L	A	R	L	G	R	F	A	G	R	L	G	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	S	R	R	R	A	L	I	N	L	S	L	C	F	P	E	R	S	E	A	E	R	E	A	I	V	D	E	M	F	A	T	A	P	Q	A	M	A	M	M	A	E	L	A	I	R	G	P	E	K	I	Q	P	R	V	D	W	Q	G	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	I	I	E	E	M	R	R	N	N	E	K	V	I	F	L	V	P	H	G	W	A	V	D	I	P	A	M	L	M	A	S	Q	G	Q	K	M	A	A	M	F	H	N	Q	G	N	P	V	F	D	Y	V	W	N	T	V	R	R	R	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	G	R	L	H	A	R	N	D	G	I	K	P	F	I	Q	S	V	R	Q	G	Y	W	G	Y	Y	L	P	D	Q	D	H	G	P	E	H	S	E	F	V	D	F	F	A	T	Y	K	A	T	L	P	A	I	G	R	L	M	K	V	C
Secondary structure
SS confidence
Disorder																																				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	A	R	V	V	P	L	F	P	I	Y	D	G	K	T	H	R	L	T	I	Q	V	R	P	P	M	D	D	L	L	E	A	D	D	H	T	I	A	R	R	M	N	E	E	V	E	I	F	V	G	P	R	P	E	Q	Y	T	W	I	L
Secondary structure
SS confidence
Disorder																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Sequence		K	L	L	K	T	R	K	P	G	E	I	Q	P	Y	K	R	K	D	L	Y	P	I	K
Secondary structure
SS confidence
Disorder											?	?		?			?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ltx chain A Region: 268 - 303 Aligned: 36 Modelled: 36 Confidence: 64.7% Identity: 14% PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Phyre2 PDB 1j7j chain A Region: 106 - 227 Aligned: 116 Modelled: 122 Confidence: 55.9% Identity: 13% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 1kl7 chain A Region: 61 - 200 Aligned: 140 Modelled: 140 Confidence: 55.3% Identity: 6% Fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes Family: Tryptophan synthase beta subunit-like PLP-dependent enzymes Phyre2 PDB 1g9s chain A Region: 107 - 228 Aligned: 122 Modelled: 122 Confidence: 49.2% Identity: 12% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 2j5b chain A Region: 116 - 143 Aligned: 28 Modelled: 28 Confidence: 44.6% Identity: 11% PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol Phyre2 PDB 1a3c chain A Region: 183 - 231 Aligned: 48 Modelled: 49 Confidence: 42.3% Identity: 10% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 2igb chain A domain 1 Region: 183 - 231 Aligned: 48 Modelled: 49 Confidence: 36.0% Identity: 15% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 1xuz chain A Region: 116 - 245 Aligned: 96 Modelled: 96 Confidence: 34.3% Identity: 10% PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol Phyre2 PDB 2pju chain D Region: 125 - 249 Aligned: 104 Modelled: 104 Confidence: 33.9% Identity: 11% PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr Phyre2 PDB 1yfz chain A Region: 129 - 228 Aligned: 100 Modelled: 100 Confidence: 33.9% Identity: 7% PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis Phyre2 PDB 1yfz chain A domain 1 Region: 129 - 228 Aligned: 100 Modelled: 100 Confidence: 33.9% Identity: 7% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 3efh chain B Region: 120 - 203 Aligned: 83 Modelled: 84 Confidence: 32.2% Identity: 8% PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1; PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1 Phyre2 PDB 1nkt chain A domain 4 Region: 120 - 194 Aligned: 73 Modelled: 73 Confidence: 31.3% Identity: 12% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 3o7m chain D Region: 121 - 228 Aligned: 108 Modelled: 108 Confidence: 31.3% Identity: 7% PDB header:transferase Chain: D: PDB Molecule:hypoxanthine phosphoribosyltransferase; PDBTitle: 1.98 angstrom resolution crystal structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-2) from bacillus anthracis str. 'ames3 ancestor' Phyre2 PDB 2zdr chain A domain 2 Region: 117 - 245 Aligned: 95 Modelled: 95 Confidence: 29.0% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: NeuB-like Phyre2 PDB 1ufr chain A Region: 183 - 231 Aligned: 48 Modelled: 49 Confidence: 28.8% Identity: 13% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 3lub chain E Region: 121 - 142 Aligned: 22 Modelled: 22 Confidence: 28.4% Identity: 23% PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution Phyre2 PDB 1v7z chain A Region: 120 - 161 Aligned: 42 Modelled: 42 Confidence: 26.8% Identity: 17% Fold: Creatininase Superfamily: Creatininase Family: Creatininase Phyre2 PDB 1w30 chain A Region: 183 - 231 Aligned: 48 Modelled: 49 Confidence: 25.9% Identity: 15% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 2q5c chain A Region: 125 - 249 Aligned: 104 Modelled: 104 Confidence: 24.3% Identity: 9% PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum Phyre2 1 c1ltxA_ 2 d1j7ja_ 3 d1kl7a_ 4 d1g9sa_ 5 c2j5bA_ 6 d1a3ca_ 7 d2igba1 8 c1xuzA_ 9 c2pjuD_ 10 c1yfzA_ 11 d1yfza1 12 c3efhB_ 13 d1nkta4 14 c3o7mD_ 15 d2zdra2 16 d1ufra_ 17 c3lubE_ 18 d1v7za_ 19 d1w30a_ 20 c2q5cA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ltxA_ 64.7 14 PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid 2 d1j7ja_ 55.9 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 3 d1kl7a_ 55.3 6 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 4 d1g9sa_ 49.2 12 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 5 c2j5bA_ 44.6 11 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol 6 d1a3ca_ 42.3 10 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 7 d2igba1 36.0 15 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 8 c1xuzA_ 34.3 10 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 9 c2pjuD_ 33.9 11 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 10 c1yfzA_ 33.9 7 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis 11 d1yfza1 33.9 7 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 12 c3efhB_ 32.2 8 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1; PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1 13 d1nkta4 31.3 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 14 c3o7mD_ 31.3 7 PDB header:transferase Chain: D: PDB Molecule:hypoxanthine phosphoribosyltransferase; PDBTitle: 1.98 angstrom resolution crystal structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-2) from bacillus anthracis str. 'ames3 ancestor' 15 d2zdra2 29.0 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 16 d1ufra_ 28.8 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 17 c3lubE_ 28.4 23 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 18 d1v7za_ 26.8 17 Fold:Creatininase Superfamily:Creatininase Family:Creatininase 19 d1w30a_ 25.9 15 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 20 c2q5cA_ 24.3 9 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 21 c3cwcB_ not modelled 24.1 8 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 22 c3no4A_ not modelled 24.0 12 PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution 23 d1d8da_ not modelled 22.4 14 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 24 d1hgxa_ not modelled 22.4 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 25 d1pzma_ not modelled 21.0 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 26 d1l1qa_ not modelled 19.1 8 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 27 d1wgla_ not modelled 18.6 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 28 c2ps3A_ not modelled 18.4 12 PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli 29 d1a9xb1 not modelled 17.6 15 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Carbamoyl phosphate synthetase, small subunit N-terminal domain Family:Carbamoyl phosphate synthetase, small subunit N-terminal domain 30 c2dhyA_ not modelled 17.6 10 PDB header:immune system Chain: A: PDB Molecule:cue domain-containing protein 1; PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1) 31 c2ov3A_ not modelled 17.3 17 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein component of an abc PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound 32 d1o60a_ not modelled 17.1 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 33 c3kb8A_ not modelled 17.0 9 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine phosphoribosyltransferase; PDBTitle: 2.09 angstrom resolution structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-1) from bacillus anthracis str. 'ames3 ancestor' in complex with gmp 34 d1hrua_ not modelled 16.4 20 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 35 c2ywtA_ not modelled 16.1 7 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: crystal structure of hypoxanthine-guanine2 phosphoribosyltransferase with gmp from thermus3 thermophilus hb8 36 d1d7ya2 not modelled 15.7 8 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 37 c2o1eB_ not modelled 15.4 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ycdh; PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583 38 d1jcua_ not modelled 15.3 21 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 39 d2h6fa1 not modelled 15.3 14 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 40 d1cv8a_ not modelled 15.2 11 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like 41 d1gm5a4 not modelled 15.2 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 42 c3f6tA_ not modelled 15.1 15 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution 43 c3dl8B_ not modelled 14.9 11 PDB header:protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 44 c2cycB_ not modelled 14.3 7 PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii 45 d2obba1 not modelled 14.1 12 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 46 d1k7ja_ not modelled 13.9 25 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 47 c1keeH_ not modelled 13.5 15 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 48 c3mioA_ not modelled 13.3 16 PDB header:lyase Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase; PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00 49 d1tksa_ not modelled 13.3 14 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 50 c1tnoI_ not modelled 13.2 12 PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b 51 c2advB_ not modelled 13.0 23 PDB header:hydrolase Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase; PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism 52 d1tuwa_ not modelled 12.9 22 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Polyketide synthesis cyclase 53 d1p3qq_ not modelled 12.7 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 54 d1snna_ not modelled 12.5 13 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 55 d1xdfa1 not modelled 12.5 18 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 56 c3m8yC_ not modelled 12.4 11 PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation 57 c1tf2A_ not modelled 12.4 11 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis 58 c1fcuA_ not modelled 12.4 11 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure (trigonal) of bee venom hyaluronidase 59 d1mn3a_ not modelled 12.2 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 60 d1fl2a2 not modelled 12.1 9 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 61 d1fcqa_ not modelled 11.8 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Bee venom hyaluronidase 62 c1pzmB_ not modelled 11.7 11 PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: crystal structure of hgprt-ase from leishmania tarentolae in complex2 with gmp 63 d1tc1a_ not modelled 11.5 9 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 64 d2pjua1 not modelled 11.4 11 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 65 d1pyfa_ not modelled 11.2 8 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 66 d1iuqa_ not modelled 11.1 22 Fold:Glycerol-3-phosphate (1)-acyltransferase Superfamily:Glycerol-3-phosphate (1)-acyltransferase Family:Glycerol-3-phosphate (1)-acyltransferase 67 d1g2qa_ not modelled 10.9 10 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 68 c2h3oA_ not modelled 10.7 9 PDB header:membrane protein Chain: A: PDB Molecule:merf; PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices 69 d3pmga2 not modelled 10.5 8 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 70 c2ns6A_ not modelled 10.3 15 PDB header:hydrolase Chain: A: PDB Molecule:mobilization protein a; PDBTitle: crystal structure of the minimal relaxase domain of moba2 from plasmid r1162 71 d1ikpa3 not modelled 10.3 27 Fold:Toxins' membrane translocation domains Superfamily:Exotoxin A, middle domain Family:Exotoxin A, middle domain 72 d1v71a1 not modelled 9.9 11 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 73 c2pe4A_ not modelled 9.7 21 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-1; PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis 74 d2pw6a1 not modelled 9.7 7 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 75 d1xrsa_ not modelled 9.6 19 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:D-lysine 5,6-aminomutase alpha subunit, KamD 76 c3ktsA_ not modelled 9.6 12 PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 77 d1iyjb4 not modelled 9.5 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 78 c3iraA_ not modelled 9.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 79 d1nj1a2 not modelled 9.1 13 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 80 d2aeea1 not modelled 8.8 4 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 81 c2lc0A_ not modelled 8.8 10 PDB header:protein binding Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: rv0020c_nter structure 82 d2pi8a1 not modelled 8.7 11 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 83 d1vzya2 not modelled 8.6 17 Fold:HSP33 redox switch-like Superfamily:HSP33 redox switch-like Family:HSP33 redox switch-like 84 d1mkya3 not modelled 8.6 6 Fold:Alpha-lytic protease prodomain-like Superfamily:Probable GTPase Der, C-terminal domain Family:Probable GTPase Der, C-terminal domain 85 d1k4ia_ not modelled 8.5 16 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 86 c2qx5B_ not modelled 8.2 29 PDB header:transport protein Chain: B: PDB Molecule:nucleoporin nic96; PDBTitle: structure of nucleoporin nic96 87 c3dezA_ not modelled 8.2 8 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 streptococcus mutans 88 c2eqaA_ not modelled 8.0 21 PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein st1526; PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii 89 c2jcyA_ not modelled 7.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium3 tuberculosis 90 c3koxA_ not modelled 7.8 16 PDB header:metal binding protein Chain: A: PDB Molecule:d-ornithine aminomutase e component; PDBTitle: crystal structure of ornithine 4,5 aminomutase in complex with 2,4-2 diaminobutyrate (anaerobic) 91 c3cx3A_ not modelled 7.8 11 PDB header:metal binding protein Chain: A: PDB Molecule:lipoprotein; PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein 92 c3khsB_ not modelled 7.7 11 PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase 93 c1r6uB_ not modelled 7.6 8 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity 94 d1nj8a2 not modelled 7.6 17 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 95 c2bnlE_ not modelled 7.5 12 PDB header:stress-response Chain: E: PDB Molecule:modulator protein rsbr; PDBTitle: the structure of the n-terminal domain of rsbr 96 c3g8rA_ not modelled 7.4 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 97 c3l6gA_ not modelled 7.4 12 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 98 d1p17b_ not modelled 7.4 9 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 99 c3ie5A_ not modelled 7.3 20 PDB header:plant protein, biosynthetic protein Chain: A: PDB Molecule:phenolic oxidative coupling protein hyp-1; PDBTitle: crystal structure of hyp-1 protein from hypericum perforatum2 (st john's wort) involved in hypericin biosynthesis

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0