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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1tnoI_

Fold library idPDB HeaderMoleculeTitle
c1tnoI_PDB header: transferaseChain: I: PDB Molecule: geranylgeranyltransferase type i alpha subunit;PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b


Added to library: Tue Mar 16 13:32:20 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAI
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Known secondary structure (DSSP)


TT
TT


GGG
GGGTT








SS
SS




TT


 .........80.........90.........100.........110.........120.........130.........140
Sequence ELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILN
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Known secondary structure (DSSP)
TT
TT


TT
T

TTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTL
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Known secondary structure (DSSP) T
TT
TT

TT
TT
TTT
S
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence EMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL
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Known secondary structure (DSSP)
S

TTT
GGG
TTTTTS

TT
TT
 .........290.........300.........310....
Sequence NKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS
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Known secondary structure (DSSP) TTSGGGTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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